TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM10b11.yg.2.1
(554 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT474026.1|DT474026 WS01230.BR_I13 PT-GT-FL-A-3 Populus ... 163 7e-040
gb|CV251436.1|CV251436 WS0117.B21_A03 PT-P-FL-A-2 Populus t... 158 2e-038
gb|CV252118.1|CV252118 WS0119.B21_H24 PT-P-FL-A-2 Populus t... 158 2e-038
gb|CV255927.1|CV255927 WS0242.B21_H02 PTxD-ICC-N-A-14 Popul... 158 2e-038
gb|DT506997.1|DT506997 WS02417.BR_B06 PTxD-ICC-N-A-14 Popul... 158 2e-038
gb|DT516005.1|DT516005 WS02430.B21_C05 PTxD-ICC-N-A-14 Popu... 158 2e-038
gb|DT511664.1|DT511664 WS02417.B21_B06 PTxD-ICC-N-A-14 Popu... 145 2e-034
gb|DT499943.1|DT499943 WS9991.BR_M13 PT-P-FL-A-2 Populus tr... 130 6e-030
gb|BU885289.1|BU885289 R029A09 Populus root cDNA library Po... 117 4e-026
gb|DV466374.1|DV466374 MTUNUL1.P5.G11 NUL Populus fremontii... 117 4e-026
gb|BP927576.1|BP927576 BP927576 full-length enriched poplar... 116 8e-026
gb|CF235057.1|CF235057 PtaJXT0018D1D0107 Poplar cDNA librar... 112 1e-024
gb|DT471728.1|DT471728 WS01214.BR_O01 PT-GT-FL-A-3 Populus ... 105 3e-022
gb|CV232901.1|CV232901 WS0199.B21_A11 PT-DX-N-A-10 Populus ... 104 4e-022
>gb|DT474026.1|DT474026 WS01230.BR_I13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_I13 5', mRNA sequence
Length = 903
Score = 163 bits (351), Expect = 7e-040
Identities = 67/126 (53%), Positives = 86/126 (68%)
Frame = +2 / +1
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 109 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 288
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 289 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 468
Query: 533 LYIVGM 550
+Y +GM
Sbjct: 469 IYFIGM 486
>gb|CV251436.1|CV251436 WS0117.B21_A03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_A03 3', mRNA sequence
Length = 598
Score = 158 bits (340), Expect = 2e-038
Identities = 65/124 (52%), Positives = 84/124 (67%)
Frame = +2 / -3
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 485 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 306
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 305 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 126
Query: 533 LYIV 544
+Y +
Sbjct: 125 IYFI 114
>gb|CV252118.1|CV252118 WS0119.B21_H24 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_H24 3', mRNA sequence
Length = 645
Score = 158 bits (340), Expect = 2e-038
Identities = 65/124 (52%), Positives = 84/124 (67%)
Frame = +2 / -2
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 485 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 306
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 305 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 126
Query: 533 LYIV 544
+Y +
Sbjct: 125 IYFI 114
>gb|CV255927.1|CV255927 WS0242.B21_H02 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0242_H02 3', mRNA sequence
Length = 802
Score = 158 bits (340), Expect = 2e-038
Identities = 65/124 (52%), Positives = 84/124 (67%)
Frame = +2 / -1
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 742 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 563
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 562 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 383
Query: 533 LYIV 544
+Y +
Sbjct: 382 IYFI 371
>gb|DT506997.1|DT506997 WS02417.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_B06 5', mRNA sequence
Length = 769
Score = 158 bits (340), Expect = 2e-038
Identities = 65/124 (52%), Positives = 84/124 (67%)
Frame = +2 / +2
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 50 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 229
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 230 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 409
Query: 533 LYIV 544
+Y +
Sbjct: 410 IYFI 421
>gb|DT516005.1|DT516005 WS02430.B21_C05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_C05 3', mRNA sequence
Length = 644
Score = 158 bits (340), Expect = 2e-038
Identities = 65/124 (52%), Positives = 84/124 (67%)
Frame = +2 / -3
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 585 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 406
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLL 532
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A LADT WGRY T+ F
Sbjct: 405 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSS 226
Query: 533 LYIV 544
+Y +
Sbjct: 225 IYFI 214
>gb|DT511664.1|DT511664 WS02417.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_B06 3', mRNA sequence
Length = 710
Score = 145 bits (312), Expect = 2e-034
Identities = 59/99 (59%), Positives = 71/99 (71%)
Frame = +2 / -3
Query: 248 DGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAAT 427
DG++DIN LK+ TGNW+AC ILGTE E LA+Y A NLVTYLT +L E N+ AA
Sbjct: 645 DGSVDINGNPVLKQKTGNWKACPFILGTECCERLAYYGIATNLVTYLTKKLHEGNVSAAR 466
Query: 428 NVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIV 544
NV+TW G+CYLTPLI A LADT WGRY T+ F +Y +
Sbjct: 465 NVTTWSGTCYLTPLIGAVLADTCWGRYWTIAAFSSIYFI 349
>gb|DT499943.1|DT499943 WS9991.BR_M13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_H24
5', mRNA sequence
Length = 442
Score = 130 bits (279), Expect = 6e-030
Identities = 54/102 (52%), Positives = 70/102 (68%)
Frame = +2 / +3
Query: 173 AADEERPLIQYLAPEDDEASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLA 352
+ +E L++ + DE++ YT DG++DIN LK+ TGNW+AC ILGTE E LA
Sbjct: 132 SVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLA 311
Query: 353 FYATAKNLVTYLTAELGETNIDAATNVSTWIGSCYLTPLISA 478
+Y A NLVTYLT +L E N+ AA NV+TW G+CYLTPLI A
Sbjct: 312 YYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTPLIGA 437
>gb|BU885289.1|BU885289 R029A09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 596
Score = 117 bits (251), Expect = 4e-026
Identities = 47/110 (42%), Positives = 69/110 (62%)
Frame = +2 / +2
Query: 224 EASSRYTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELG 403
E T DGT+D + + A+K +G W A +IL + LAF+ NLV +LT L
Sbjct: 113 EGEGECTFDGTVDWHGRPAIKAKSGQWAAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQ 292
Query: 404 ETNIDAATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
+ N DAA NVS W G+ Y+ L+ AFL+D+YWGRYKT VF +++++G++
Sbjct: 293 QNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAVFQVIFVIGLV 442
>gb|DV466374.1|DV466374 MTUNUL1.P5.G11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 813
Score = 117 bits (251), Expect = 4e-026
Identities = 45/104 (43%), Positives = 66/104 (63%)
Frame = +2 / +3
Query: 242 TSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDA 421
T DGT+D+ + TG W+AC ++G E E +AFY A NLV YLT +L E + +
Sbjct: 69 TQDGTVDLRGRPVQASRTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLHEETVAS 248
Query: 422 ATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGML 553
NV+ W G+ ++TP++ A++ADTY GRY T V L+Y +GM+
Sbjct: 249 VRNVNNWSGAVWITPILGAYIADTYLGRYWTFTVSSLIYAMGMI 380
>gb|BP927576.1|BP927576 BP927576 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-073_K09.f 5', mRNA sequence
Length = 517
Score = 116 bits (249), Expect = 8e-026
Identities = 44/101 (43%), Positives = 67/101 (66%)
Frame = +2 / +1
Query: 248 DGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAAT 427
DG +D N + + +G WR+ F I+G E AE A+Y + NL+TYLT LG++ AA
Sbjct: 67 DGCVDYNGRPVYRSISGGWRSAFFIIGVEVAERSAYYGISSNLITYLTGTLGQSTATAAE 246
Query: 428 NVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
NV+ W G+ L PL+ AF+AD++ GRY+T++V +YI+G+
Sbjct: 247 NVNVWSGTTMLLPLLGAFIADSFLGRYRTIVVASCIYILGL 369
>gb|CF235057.1|CF235057 PtaJXT0018D1D0107 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 622
Score = 112 bits (240), Expect = 1e-024
Identities = 43/101 (42%), Positives = 68/101 (67%)
Frame = +2 / +1
Query: 248 DGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDAAT 427
DG++D + A + ++G WR+ I+G E AE A+Y + NL+TYLT LG++ AA
Sbjct: 79 DGSVDHKGRPAYRSNSGGWRSASFIIGVEVAERFAYYGISSNLITYLTGPLGQSTATAAE 258
Query: 428 NVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVGM 550
NV+ W G+ L PL+ AF+AD++ GR++T+I L+YI+G+
Sbjct: 259 NVNVWSGTASLLPLLGAFVADSFLGRFRTIIFASLIYILGL 381
>gb|DT471728.1|DT471728 WS01214.BR_O01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_O01 5', mRNA sequence
Length = 593
Score = 105 bits (223), Expect = 3e-022
Identities = 38/103 (36%), Positives = 66/103 (64%)
Frame = +2 / +1
Query: 239 YTSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNID 418
YT DGT+D+ + L+ G +AC ++ E E +A+Y + NLV YLT +L + +
Sbjct: 91 YTQDGTVDLKGKPVLRSKRGGLKACSFVVVYEVFERMAYYGISSNLVVYLTKKLHQGTVK 270
Query: 419 AATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIVG 547
++ NV+ W+G+ +LTP++ A++AD + GRY T +V ++Y+ G
Sbjct: 271 SSNNVTNWVGTIWLTPILGAYVADAHLGRYWTFVVASVIYLFG 399
>gb|CV232901.1|CV232901 WS0199.B21_A11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_A11 3', mRNA sequence
Length = 671
Score = 104 bits (222), Expect = 4e-022
Identities = 41/101 (40%), Positives = 63/101 (62%)
Frame = +2 / -3
Query: 242 TSDGTLDINKQRALKKSTGNWRACFMILGTEFAECLAFYATAKNLVTYLTAELGETNIDA 421
T D +D + ++G WR+ I+G E AE A+Y + NL+TYLT LG++ + A
Sbjct: 519 TVDDCVDYKGNPVCRYNSGGWRSAAFIIGVEVAERFAYYGISSNLITYLTGPLGQSTVTA 340
Query: 422 ATNVSTWIGSCYLTPLISAFLADTYWGRYKTMIVFLLLYIV 544
A NV+ W G+ L PL AF+AD++ GR +T+I+ L+YI+
Sbjct: 339 AKNVNVWSGTASLLPLFGAFVADSFLGRCRTIIIASLIYIL 217
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 285,163,754
Number of Sequences: 369679
Number of extensions: 4018509
Number of successful extensions: 66482
Number of sequences better than 1.0e-020: 15
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6510251447
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)