TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 114 4e-051
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 115 7e-051
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 103 4e-047
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 103 4e-047
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 103 6e-047
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 103 6e-047
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 103 8e-044
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 101 6e-041
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 103 7e-039
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 99 9e-034
gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves... 64 4e-030
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 71 4e-028
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 85 9e-027
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 99 1e-021
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 114 bits (244), Expect(2) = 4e-051
Identities = 51/92 (55%), Positives = 62/92 (67%)
Frame = +1 / +1
Query: 244 NYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSG 423
N LV SAITW N DG TY+KIK+VN G++ VSL +SV GL + Q GS KTVLTS
Sbjct: 190 NSSSLVASAITWTNSVDGETYLKIKIVNVGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSS 369
Query: 424 WLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+ DENSF P+KVVP S + NA K M +I+
Sbjct: 370 NVMDENSFTDPNKVVPDLSLLENADKDMNIII 465
Score = 107 bits (229), Expect(2) = 4e-051
Identities = 41/61 (67%), Positives = 50/61 (81%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VNDND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 4 KNSDIVEMASYAPLFVNDNDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKL 183
Query: 235 Q 237
Q
Sbjct: 184 Q 186
Score = 80.4 bits (170), Expect(2) = 7e-033
Identities = 43/82 (52%), Positives = 49/82 (59%)
Frame = -3 / -1
Query: 500 LPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALLPKFT 321
L A L +GTTL G KEFSS + +V TVF+DP+ NP T+ RLT L P FT
Sbjct: 446 LSAFSSRLRSGTTLFGSVKEFSSITFEEVSTVFVDPDNCELSPNPSTETLRLTCLFPTFT 267
Query: 320 TFIFM*VFPSCGLFQVIADVTS 255
FIF *V PS QVIAD TS
Sbjct: 266 IFIFR*VSPSTEFVQVIADATS 201
Score = 79.0 bits (167), Expect(2) = 7e-033
Identities = 39/53 (73%), Positives = 41/53 (77%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLF 57
VA L+SLK Q* G P*C ELKTIASGFHL SLSFT+SGA LAIST SLF
Sbjct: 164 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSLSFTKSGA*LAISTISLF 6
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 115 bits (248), Expect(2) = 7e-051
Identities = 51/92 (55%), Positives = 63/92 (68%)
Frame = +1 / +3
Query: 244 NYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSG 423
N LV SAITW N DG TY+KIK+VNFG++ V+L +SV GL + Q GS KTVLTS
Sbjct: 312 NSSSLVASAITWTNSVDGETYLKIKIVNFGNRHVNLEVSVDGLGLNSQLSGSTKTVLTSS 491
Query: 424 WLRDENSFQQPDKVVPAASPITNAGKQMGVIL 519
+ DENSF P+KVVP S + NA K M +I+
Sbjct: 492 NVMDENSFTDPNKVVPDLSLLENADKDMNIII 587
Score = 104 bits (223), Expect(2) = 7e-051
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 126 KNSDIVEMASYAPLFVNHNDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDANL 305
Query: 235 Q 237
Q
Sbjct: 306 Q 308
Score = 98.6 bits (210), Expect(2) = 1e-039
Identities = 49/71 (69%), Positives = 53/71 (74%)
Frame = -3 / -2
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL FT+SGA LAIST SLF S+PMRN
Sbjct: 286 VAPLDSLKNFCTQ*LGVP*CIEELKTIASGFHLLSL*FTKSGA*LAISTISLFFSSPMRN 107
Query: 35 AASAKAAISVP 3
ASA AA +P
Sbjct: 106 PASASAAKRLP 74
Score = 83.1 bits (176), Expect(2) = 1e-039
Identities = 44/82 (53%), Positives = 50/82 (60%)
Frame = -3 / -2
Query: 500 LPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALLPKFT 321
L A L +GTTL G KEFSS + +VRTVF+DP+ NP T+ R T L PKFT
Sbjct: 568 LSAFSSKLRSGTTLFGSVKEFSSITFEEVRTVFVDPDNCELSPNPSTETSRFTCLFPKFT 389
Query: 320 TFIFM*VFPSCGLFQVIADVTS 255
FIF *V PS QVIAD TS
Sbjct: 388 IFIFR*VSPSTEFVQVIADATS 323
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 103 bits (220), Expect(3) = 4e-047
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / -1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 733 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGATLLDAKL 554
Query: 235 Q 237
Q
Sbjct: 553 Q 551
Score = 99.5 bits (212), Expect(3) = 4e-047
Identities = 44/77 (57%), Positives = 53/77 (68%)
Frame = +1 / -1
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 502 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 323
Query: 472 AASPITNAGKQMGVILN 522
A + I NA K M V+L+
Sbjct: 322 AQTMIENADKDMDVVLS 272
Score = 98.6 bits (210), Expect(2) = 1e-034
Identities = 48/71 (67%), Positives = 54/71 (76%)
Frame = -3 / +3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF S+P+RN
Sbjct: 573 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRN 752
Query: 35 AASAKAAISVP 3
ASA AA +P
Sbjct: 753 PASASAAKRLP 785
Score = 73.6 bits (155), Expect(2) = 2e-025
Identities = 39/73 (53%), Positives = 47/73 (64%)
Frame = +3 / -3
Query: 3 RNTNSCFS*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLD 182
R + SC S*S I +W KEQR DGKLC+T K Q* +VE RC L L+ ALW SKLL
Sbjct: 785 RKSFSCTS*SWIPYWAGKEQRYCGDGKLCTTFRKCQ**EVESRCDCLQLVDALWNSKLLG 606
Query: 183 AALFQRFKQRHTS 221
A + QR K ++S
Sbjct: 605 AKILQRVKWSNSS 567
Score = 66.7 bits (140), Expect(2) = 1e-034
Identities = 36/74 (48%), Positives = 42/74 (56%)
Frame = -3 / +3
Query: 512 TPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALL 333
T + L A I + AGTT G KEFSS +V TVF+DP+ NP + R T L
Sbjct: 282 TSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLF 461
Query: 332 PKFTTFIFM*VFPS 291
PKFT FIF *V PS
Sbjct: 462 PKFTIFIFR*VLPS 503
Score = 61.3 bits (128), Expect(2) = 2e-025
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +3 / -3
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGAG 473
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G E L +++GGA
Sbjct: 500 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGREFLCESKKGGAS 321
Query: 474 GKSNNQRGQANGC 512
+ + Q +GC
Sbjct: 320 PNYDREC*QRHGC 282
Score = 23.4 bits (45), Expect(3) = 4e-047
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -1
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 547 NSSTLVASAITWQN 506
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 103 bits (220), Expect(3) = 4e-047
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / -3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 733 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGATLLDAKL 554
Query: 235 Q 237
Q
Sbjct: 553 Q 551
Score = 99.5 bits (212), Expect(3) = 4e-047
Identities = 44/77 (57%), Positives = 53/77 (68%)
Frame = +1 / -3
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 502 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 323
Query: 472 AASPITNAGKQMGVILN 522
A + I NA K M V+L+
Sbjct: 322 AQTMIENADKDMDVVLS 272
Score = 93.1 bits (198), Expect(2) = 5e-033
Identities = 45/64 (70%), Positives = 50/64 (78%)
Frame = -3 / +3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF S+P+RN
Sbjct: 573 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRN 752
Query: 35 AASA 24
ASA
Sbjct: 753 PASA 764
Score = 67.2 bits (141), Expect(2) = 1e-023
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +3 / -2
Query: 24 S*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLDAALFQRF 203
S*S I +W KEQR DGKLC+T K Q* +VE RC L L+ ALW SKLL A + QR
Sbjct: 764 S*SWIPYWAGKEQRYCGDGKLCTTFRKCQ**EVESRCDCLQLVDALWNSKLLGAKILQRV 585
Query: 204 KQRHTS 221
K ++S
Sbjct: 584 KWSNSS 567
Score = 66.7 bits (140), Expect(2) = 5e-033
Identities = 36/74 (48%), Positives = 42/74 (56%)
Frame = -3 / +3
Query: 512 TPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALL 333
T + L A I + AGTT G KEFSS +V TVF+DP+ NP + R T L
Sbjct: 282 TSMSLSAFSIIVWAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLF 461
Query: 332 PKFTTFIFM*VFPS 291
PKFT FIF *V PS
Sbjct: 462 PKFTIFIFR*VLPS 503
Score = 61.3 bits (128), Expect(2) = 1e-023
Identities = 25/73 (34%), Positives = 42/73 (57%)
Frame = +3 / -2
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGAG 473
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G E L +++GGA
Sbjct: 500 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGREFLCESKKGGAS 321
Query: 474 GKSNNQRGQANGC 512
+ + Q +GC
Sbjct: 320 PNYDREC*QRHGC 282
Score = 23.4 bits (45), Expect(3) = 4e-047
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -3
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 547 NSSTLVASAITWQN 506
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 103 bits (221), Expect(3) = 6e-047
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / -1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 724 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKL 545
Query: 235 Q 237
Q
Sbjct: 544 Q 542
Score = 98.6 bits (210), Expect(3) = 6e-047
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +1 / -1
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 493 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 314
Query: 472 AASPITNAGKQMGVILN 522
A + + NA K M V+L+
Sbjct: 313 AQTMLENADKDMDVVLS 263
Score = 95.9 bits (204), Expect(2) = 2e-033
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = -3 / +3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF S+P+R
Sbjct: 564 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRK 743
Query: 35 AASAKAAISVP 3
ASA AA +P
Sbjct: 744 PASASAAKRLP 776
Score = 73.1 bits (154), Expect(2) = 5e-025
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +3 / -3
Query: 3 RNTNSCFS*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLD 182
R + SC *S +W KEQR DGKLC+T C+ Q* KVE RC L L+ ALW S+LL
Sbjct: 776 RKSFSCTR*SWFPYWAGKEQRYCRDGKLCTTFCECQ**KVESRCDCLQLVNALWNSELLG 597
Query: 183 AALFQRFKQRHTS 221
A + QR K ++S
Sbjct: 596 AKILQRVKWSNSS 558
Score = 65.4 bits (137), Expect(2) = 2e-033
Identities = 35/74 (47%), Positives = 41/74 (55%)
Frame = -3 / +3
Query: 512 TPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALL 333
T + L A + AGTT G KEFSS +V TVF+DP+ NP + R T L
Sbjct: 273 TSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLF 452
Query: 332 PKFTTFIFM*VFPS 291
PKFT FIF *V PS
Sbjct: 453 PKFTIFIFR*VLPS 494
Score = 59.9 bits (125), Expect(2) = 5e-025
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3 / -3
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGAG 473
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G E L +++GGA
Sbjct: 491 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGREFLRESKKGGAS 312
Query: 474 GKSNNQRGQANGC 512
+ Q +GC
Sbjct: 311 TNYAREC*QRHGC 273
Score = 23.4 bits (45), Expect(3) = 6e-047
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -1
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 538 NSSTLVASAITWQN 497
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 103 bits (221), Expect(3) = 6e-047
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / -1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 713 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKL 534
Query: 235 Q 237
Q
Sbjct: 533 Q 531
Score = 98.6 bits (210), Expect(3) = 6e-047
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +1 / -1
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 482 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 303
Query: 472 AASPITNAGKQMGVILN 522
A + + NA K M V+L+
Sbjct: 302 AQTMLENADKDMDVVLS 252
Score = 77.2 bits (163), Expect(2) = 7e-028
Identities = 38/53 (71%), Positives = 41/53 (77%)
Frame = -3 / +1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLF 57
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF
Sbjct: 553 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHLLSLAFTKSGA*LAISTISLF 711
Score = 65.4 bits (137), Expect(2) = 7e-028
Identities = 35/74 (47%), Positives = 41/74 (55%)
Frame = -3 / +1
Query: 512 TPICLPALVIGLAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALL 333
T + L A + AGTT G KEFSS +V TVF+DP+ NP + R T L
Sbjct: 262 TSMSLSAFSSIVCAGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLF 441
Query: 332 PKFTTFIFM*VFPS 291
PKFT FIF *V PS
Sbjct: 442 PKFTIFIFR*VLPS 483
Score = 61.7 bits (129), Expect(2) = 1e-021
Identities = 31/56 (55%), Positives = 38/56 (67%)
Frame = +3 / -3
Query: 54 KEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLDAALFQRFKQRHTS 221
KEQR DGKLC+T C+ Q* KVE RC L L+ ALW S+LL A + QR K ++S
Sbjct: 714 KEQRYCRDGKLCTTFCECQ**KVESRCDCLQLVNALWNSELLGAKILQRVKWSNSS 547
Score = 59.9 bits (125), Expect(2) = 1e-021
Identities = 25/73 (34%), Positives = 41/73 (56%)
Frame = +3 / -3
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGAG 473
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G E L +++GGA
Sbjct: 480 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGREFLRESKKGGAS 301
Query: 474 GKSNNQRGQANGC 512
+ Q +GC
Sbjct: 300 TNYAREC*QRHGC 262
Score = 23.4 bits (45), Expect(3) = 6e-047
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -1
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 527 NSSTLVASAITWQN 486
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 103 bits (220), Expect(3) = 8e-044
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / +1
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 79 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSTHYGTPSYWVQKFFRESSGATLLDAKL 258
Query: 235 Q 237
Q
Sbjct: 259 Q 261
Score = 98.6 bits (210), Expect(2) = 1e-033
Identities = 48/71 (67%), Positives = 54/71 (76%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF S+P+RN
Sbjct: 239 VAPLDSLKNFCTQ*LGVP*CVDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRN 60
Query: 35 AASAKAAISVP 3
ASA AA +P
Sbjct: 59 PASASAAKRLP 27
Score = 88.6 bits (188), Expect(3) = 8e-044
Identities = 39/67 (58%), Positives = 46/67 (68%)
Frame = +1 / +1
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 310 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 489
Query: 472 AASPITN 492
A + I N
Sbjct: 490 AQTMIEN 510
Score = 73.6 bits (155), Expect(2) = 7e-024
Identities = 39/73 (53%), Positives = 47/73 (64%)
Frame = +3 / +3
Query: 3 RNTNSCFS*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLD 182
R + SC S*S I +W KEQR DGKLC+T K Q* +VE RC L L+ ALW SKLL
Sbjct: 27 RKSFSCTS*SWIPYWAGKEQRYCGDGKLCTTFRKCQ**EVESRCDCLQLVDALWNSKLLG 206
Query: 183 AALFQRFKQRHTS 221
A + QR K ++S
Sbjct: 207 AKILQRVKWSNSS 245
Score = 63.5 bits (133), Expect(2) = 1e-033
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = -3 / -1
Query: 473 AGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALLPKFTTFIFM*VFP 294
AGTT G KEFSS +V TVF+DP+ NP + R T L PKFT FIF *V P
Sbjct: 491 AGTTFFGFAKEFSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*VLP 312
Query: 293 S 291
S
Sbjct: 311 S 309
Score = 55.8 bits (116), Expect(2) = 7e-024
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +3 / +3
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGA 470
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G E L +++GGA
Sbjct: 312 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGREFLCESKKGGA 488
Score = 23.4 bits (45), Expect(3) = 8e-044
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / +1
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 265 NSSTLVASAITWQN 306
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 101 bits (216), Expect(2) = 6e-041
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RW+PDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 48 KNSDIVEMASYAPLFVNANDRRWSPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKL 227
Query: 235 Q 237
Q
Sbjct: 228 Q 230
Score = 91.3 bits (194), Expect(2) = 8e-032
Identities = 45/67 (67%), Positives = 50/67 (74%)
Frame = -3 / -3
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASG HL SL+FT+SGA LAIST SLF S+P+R
Sbjct: 208 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGLHLLSLAFTKSGA*LAISTISLFFSSPIRK 29
Query: 35 AASAKAA 15
ASA AA
Sbjct: 28 PASASAA 8
Score = 85.9 bits (182), Expect(2) = 6e-041
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = +1 / +3
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 279 DGKTYLKIKIVNFGNSKVNLKVSIVGLGLSSQLSGSTKTVLTSSNLMDENSFPNPKKVVP 458
Query: 472 A 474
A
Sbjct: 459 A 461
Score = 69.9 bits (147), Expect(2) = 5e-024
Identities = 35/69 (50%), Positives = 44/69 (63%)
Frame = +3 / +2
Query: 15 SCFS*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLDAALF 194
SC *S +W KEQR DGKLC+T C+ Q* +VE RC L L+ ALW S+LL A +
Sbjct: 8 SCTR*SWFPYWAGKEQRYCGDGKLCTTFCECQ**EVESRCDCLQLVNALWNSELLGAKIL 187
Query: 195 QRFKQRHTS 221
QR K ++S
Sbjct: 188 QRVKWSNSS 214
Score = 64.4 bits (135), Expect(2) = 8e-032
Identities = 32/61 (52%), Positives = 36/61 (59%)
Frame = -3 / -3
Query: 473 AGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALLPKFTTFIFM*VFP 294
AGTT G KEFSS +V TVF+DP+ NP + R T L PKFT FIF *V P
Sbjct: 460 AGTTFFGFGKEFSSIKLEEVSTVFVDPDNCELSPNPTMETLRFTLLFPKFTIFIFR*VLP 281
Query: 293 S 291
S
Sbjct: 280 S 278
Score = 59.9 bits (125), Expect(2) = 5e-024
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3 / +2
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQGGAG 473
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G*E L +++GGA
Sbjct: 281 WQNLPENKDCEFWEQQSESQSFHCWIGAQLTIVWINKNCAHFF*LNG*EFLPESKKGGAS 460
Query: 474 GK 479
K
Sbjct: 461 PK 466
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 103 bits (221), Expect(3) = 7e-039
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1 / +2
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTI 234
+NSD+VEMAS APL VN ND+RWNPDAIVFNS HYG P+YW+ FF++SS ATL + +
Sbjct: 317 KNSDIVEMASYAPLFVNANDRRWNPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKL 496
Query: 235 Q 237
Q
Sbjct: 497 Q 499
Score = 95.9 bits (204), Expect(2) = 1e-029
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = -3 / -2
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIASGFHLWSLSFTRSGAQLAISTTSLFLSNPMRN 36
VA L+SLK Q* G P*C ELKTIASGFHL SL+FT+SGA LAIST SLF S+P+R
Sbjct: 477 VAPLDSLKNFCTQ*LGVP*CIDELKTIASGFHLLSLAFTKSGA*LAISTISLFFSSPIRK 298
Query: 35 AASAKAAISVP 3
ASA AA +P
Sbjct: 297 PASASAAKRLP 265
Score = 73.1 bits (154), Expect(2) = 2e-021
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +3 / +1
Query: 3 RNTNSCFS*SCISHWIRKEQRRG*DGKLCSTPCKRQ*PKVEPRCYSL*LMAALWMSKLLD 182
R + SC *S +W KEQR DGKLC+T C+ Q* KVE RC L L+ ALW S+LL
Sbjct: 265 RKSFSCTR*SWFPYWAGKEQRYCRDGKLCTTFCECQ**KVESRCDCLQLVNALWNSELLG 444
Query: 183 AALFQRFKQRHTS 221
A + QR K ++S
Sbjct: 445 AKILQRVKWSNSS 483
Score = 71.3 bits (150), Expect(3) = 7e-039
Identities = 32/61 (52%), Positives = 38/61 (62%)
Frame = +1 / +2
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L D F P KV
Sbjct: 548 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDXXXFANPKKVXX 727
Query: 472 A 474
A
Sbjct: 728 A 730
Score = 52.6 bits (109), Expect(2) = 1e-029
Identities = 28/63 (44%), Positives = 33/63 (52%)
Frame = -3 / -2
Query: 479 LAAGTTLSGC*KEFSSRSQPDVRTVFMDPNV*ISVSNPVTDIFRLTALLPKFTTFIFM*V 300
+ A T G K SS +V TVF+DP+ NP + R T L PKFT FIF *V
Sbjct: 735 VCAXXTFFGFAKXXSSIKLEEVSTVFVDPDNCELSPNPSMETLRFTLLFPKFTIFIFR*V 556
Query: 299 FPS 291
PS
Sbjct: 555 LPS 547
Score = 48.0 bits (99), Expect(2) = 2e-021
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +3 / +1
Query: 294 WEHLHENKGCKFWKQSC*SEYICNWVGN*YSDIWIHKDGSHVGLAAG*ELLSTARQG 464
W++L ENK C+FW+Q S+ W+G + +WI+K+ +H G L +++G
Sbjct: 550 WQNLPENKDCEFWEQQSESQSFH*WIGAQLTIVWINKNCAHFF*LNGRXXLRESKKG 720
Score = 23.4 bits (45), Expect(3) = 7e-039
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / +2
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 503 NSSTLVASAITWQN 544
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 98.6 bits (210), Expect(3) = 9e-034
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +1 / -3
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 486 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 307
Query: 472 AASPITNAGKQMGVILN 522
A + + NA K M V+L+
Sbjct: 306 AQTMLENADKDMDVVLS 256
Score = 59.0 bits (123), Expect(3) = 9e-034
Identities = 22/38 (57%), Positives = 29/38 (76%)
Frame = +1 / -3
Query: 124 NPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQ 237
+PDAIVFNS HYG P+YW+ FF++SS ATL + +Q
Sbjct: 648 DPDAIVFNSSMHYGTPSYWVQKFFRESSGATLLDAKLQ 535
Score = 23.4 bits (45), Expect(3) = 9e-034
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -3
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 531 NSSTLVASAITWQN 490
>gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I004P65 5', mRNA sequence
Length = 486
Score = 64.0 bits (134), Expect(3) = 2e-025
Identities = 30/42 (71%), Positives = 33/42 (78%)
Frame = -3 / -3
Query: 128 GFHLWSLSFTRSGAQLAISTTSLFLSNPMRNAASAKAAISVP 3
GFHL SL FT+SGA LAIST SLF S+PMRN ASA AA +P
Sbjct: 202 GFHLLSL*FTKSGA*LAISTISLFFSSPMRNPASASAAKRLP 77
Score = 63.5 bits (133), Expect(3) = 4e-030
Identities = 25/42 (59%), Positives = 31/42 (73%)
Frame = +1 / +2
Query: 244 NYDQLVTSAITWNNPHDGNTYMKIKVVNFGSKAVSLNISVTG 369
N LV SAITW N DG TY+KIK+VNFG++ V+L +SV G
Sbjct: 314 NSSSLVASAITWTNSVDGETYLKIKIVNFGNRHVNLEVSVDG 439
Score = 53.5 bits (111), Expect(3) = 4e-030
Identities = 20/36 (55%), Positives = 27/36 (75%)
Frame = +1 / +2
Query: 130 DAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQ 237
+AIVFNS HYG P+YW+ FF++SS ATL + +Q
Sbjct: 203 NAIVFNSSMHYGTPSYWVQKFFRESSGATLLDANLQ 310
Score = 52.1 bits (108), Expect(3) = 2e-025
Identities = 24/39 (61%), Positives = 25/39 (64%)
Frame = -3 / -1
Query: 371 NPVTDIFRLTALLPKFTTFIFM*VFPSCGLFQVIADVTS 255
NP T+ R T L PKFT FIF *V PS QVIAD TS
Sbjct: 441 NPSTETSRFTCLFPKFTIFIFR*VSPSTEFVQVIADATS 325
Score = 51.7 bits (107), Expect(3) = 4e-030
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1 / +3
Query: 55 RNSDVVEMASCAPLLVNDNDQRWNP 129
+NSD+VEMAS APL VN ND+RWNP
Sbjct: 129 KNSDIVEMASYAPLFVNHNDRRWNP 203
Score = 35.7 bits (72), Expect(3) = 2e-025
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -3 / -1
Query: 215 VALLESLKKCSIQ*FGHP*CCHELKTIA 132
VA L+SLK Q* G P*C ELKTIA
Sbjct: 288 VAPLDSLKNFCTQ*LGVP*CIEELKTIA 205
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 71.3 bits (150), Expect(3) = 4e-028
Identities = 26/40 (65%), Positives = 32/40 (80%)
Frame = +1 / -3
Query: 118 RWNPDAIVFNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQ 237
RWNPDAIVFNS HYG P+YW+L FF++SS ATL + +Q
Sbjct: 66910 RWNPDAIVFNSSMHYGTPSYWVLKFFRESSGATLLDAKLQ 66791
Score = 64.4 bits (135), Expect(3) = 4e-028
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1 / -3
Query: 307 MKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKV 465
M ++VNFG++ VSL +SV GL + Q GS KTVLTS + DENSF P+KV
Sbjct: 66535 MYFQIVNFGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKV 66377
Score = 42.1 bits (86), Expect(3) = 4e-028
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +1 / -3
Query: 244 NYDQLVTSAITWNNPHDGNTYMKIKV 321
N LV SAITW N DG TY+KIKV
Sbjct: 66787 NSSSLVASAITWTNSVDGETYLKIKV 66710
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 85.4 bits (181), Expect(3) = 9e-027
Identities = 37/61 (60%), Positives = 43/61 (70%)
Frame = +1 / +3
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 189 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 368
Query: 472 A 474
A
Sbjct: 369 A 371
Score = 47.1 bits (97), Expect(3) = 9e-027
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1 / +3
Query: 142 FNSWQHYGCPNYWMLHFFKDSSSATLHPSTIQ 237
FNS HYG P+YW+ FF++SS ATL + +Q
Sbjct: 45 FNSSMHYGTPSYWVQKFFRESSGATLLDAKLQ 140
Score = 23.4 bits (45), Expect(3) = 9e-027
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / +3
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 144 NSSTLVASAITWQN 185
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 98.6 bits (210), Expect(2) = 1e-021
Identities = 43/77 (55%), Positives = 53/77 (68%)
Frame = +1 / -1
Query: 292 DGNTYMKIKVVNFGSKAVSLNISVTGLETDIQTFGSIKTVLTSGWLRDENSFQQPDKVVP 471
DG TY+KIK+VNFG+ V+L +S+ GL Q GS KTVLTS L DENSF P KVVP
Sbjct: 485 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 306
Query: 472 AASPITNAGKQMGVILN 522
A + + NA K M V+L+
Sbjct: 305 AQTMLENADKDMDVVLS 255
Score = 23.4 bits (45), Expect(2) = 1e-021
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1 / -1
Query: 244 NYDQLVTSAITWNN 285
N LV SAITW N
Sbjct: 530 NSSTLVASAITWQN 489
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.316 0.130 0.405
Matrix: BLOSUM62
Number of Hits to DB: 301,853,297
Number of Sequences: 369679
Number of extensions: 4492073
Number of successful extensions: 74275
Number of sequences better than 1.0e-020: 16
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 6115548312
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)