TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY162184.1| Populus tremuloides cellulose synthase-like ... 478 e-134
gb|AY162180.1| Populus tremuloides cellulose synthase (CesA... 207 1e-074
gb|AY573575.1| Populus tremula x Populus tremuloides cellul... 207 1e-074
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 198 4e-073
gb|AY095297.1| Populus tremuloides cellulose synthase (CesA... 202 4e-073
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 200 7e-073
gb|AY573574.1| Populus tremula x Populus tremuloides cellul... 199 9e-073
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 199 9e-073
gb|AF072131.1|AF072131 Populus tremuloides secondary xylem ... 199 1e-072
gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1)... 199 1e-072
gb|AF081534.1|AF081534 Populus x canescens cellulose syntha... 200 6e-072
gb|AY573571.1| Populus tremula x Populus tremuloides cellul... 200 4e-071
gb|CK318831.1|CK318831 X9P03h01 Populus stem seasonal libra... 200 4e-071
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 190 3e-070
gb|AF527387.1| Populus tremuloides xylem-specific cellulose... 200 5e-069
gb|CK101560.1|CK101560 F099P76.5pR Populus flower cDNA libr... 233 9e-061
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 161 1e-060
gb|CF236447.1|CF236447 PtaJXT2H2H0216 Poplar cDNA library f... 144 5e-056
gb|CK091431.1|CK091431 F099P76.3pR Populus flower cDNA libr... 212 1e-054
gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus... 134 2e-053
gb|AY055724.2| Populus tremuloides cellulose synthase (CesA... 180 2e-048
gb|BI138150.1|BI138150 F099P76Y Populus flower cDNA library... 189 2e-047
gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6... 146 1e-034
gb|BI130668.1|BI130668 G109P08Y Populus cambium cDNA librar... 144 4e-034
gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cD... 144 4e-034
gb|DT507488.1|DT507488 WS02418.BR_G10 PTxD-ICC-N-A-14 Popul... 144 7e-034
gb|DT512116.1|DT512116 WS02418.B21_G10 PTxD-ICC-N-A-14 Popu... 144 7e-034
gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6... 142 2e-033
gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6... 141 5e-033
gb|DT477686.1|DT477686 WS02520.BR_K21 PT-MB-N-A-15 Populus ... 133 6e-033
gb|DT482749.1|DT482749 WS02520.B21_K21 PT-MB-N-A-15 Populus... 133 6e-033
gb|DN486460.1|DN486460 P029E09.3pR Populus petioles cDNA li... 133 8e-031
gb|DN496021.1|DN496021 P029E09.5pR Populus petioles cDNA li... 133 8e-031
gb|DT505698.1|DT505698 WS01811.C21_J23 PTxD-IL-N-A-9 Populu... 131 5e-030
gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium... 127 9e-029
>gb|AY162184.1| Populus tremuloides cellulose synthase-like protein D4 (CSLD4) mRNA,
partial cds
Length = 3570
Score = 478 bits (1039), Expect = e-134
Identities = 188/214 (87%), Positives = 204/214 (95%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
+SPYRLLI +R+ +L LFL WRI H N DAIWLWGMSVVCE+WF FSWLLDQLPKLCP+N
Sbjct: 738 ISPYRLLIFVRIVILALFLQWRIVHPNNDAIWLWGMSVVCEVWFAFSWLLDQLPKLCPIN 917
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPV 361
RATDL VLKDKFETP+PSNPTG+SDLPG+D+FVSTADPEKEPPLVTANTILSILAADYPV
Sbjct: 918 RATDLNVLKDKFETPSPSNPTGKSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPV 1097
Query: 362 EKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVR 541
EKLSCYVSDDGGALLTFEAMAEAASFAN+WVPFCRKH+IEPRNP+SYF+LK+DPYKNKV+
Sbjct: 1098 EKLSCYVSDDGGALLTFEAMAEAASFANVWVPFCRKHDIEPRNPESYFSLKRDPYKNKVK 1277
Query: 542 QDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
QDFVKDRRRVKREYDEFKVRIN LPDSIRRRSDA
Sbjct: 1278 QDFVKDRRRVKREYDEFKVRINSLPDSIRRRSDA 1379
Score = 233 bits (503), Expect(2) = 7e-063
Identities = 104/156 (66%), Positives = 117/156 (75%)
Frame = -3 / -3
Query: 471 CLRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSG 292
CLRQKGTH V+ APPSSET*QESFSTG*SAAR+D++V AVTSGGSFSG
Sbjct: 1207 CLRQKGTHTFAKLAASAMASNVKSAPPSSET*QESFSTG*SAARIDKMVLAVTSGGSFSG 1028
Query: 291 SAVDTNISSPGKSDRPVGLDGVGVSNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTT 112
SAV+T S PG+SD PVGL G+GVSNLSF T RSVAR GHSFGS S S EK NQ+SQTT
Sbjct: 1027 SAVETKTSMPGRSDFPVGLLGLGVSNLSFNTFRSVARLIGHSFGS*SKSQEKANQTSQTT 848
Query: 111 DMPQSQMASSFLCLILHVRNRPRTAMRIRMRSLYGL 4
D+P SQ+AS F C ILH +N R +R +MRS YGL
Sbjct: 847 DIPHSQIASLFGCTILHCKNSARITIRTKMRSRYGL 740
Score = 163 bits (351), Expect = 8e-040
Identities = 81/213 (38%), Positives = 121/213 (56%)
Frame = -2 / -2
Query: 640 IRASAYRVRQTXXXXXXXXXXXXXXXXXXDKILANLVLVWVLLKIEVAVRIARLNVVLAT 461
IR++A R+RQ DKIL + VLV + L+ EV I LN++
Sbjct: 1376 IRSAANRIRQAIYSNLELIIFTLYSSTILDKILLHFVLVRIPLQTEVGFWIPGLNIMFTA 1197
Query: 460 ERNPHISKASSFSHGFKSQESPSIIRNIARKLLHRVVSSKDGQNSVCCDQWRFFLRISSR 281
ERNP+I K FSHG K + SII NI RKL + V+S + + V D+WRFF I SR
Sbjct: 1196 ERNPYICKTRCFSHGLKC*KCTSIIGNITRKLFNWVISC*N**DGVGSDKWRFFFWICSR 1017
Query: 280 YKYIKPW*IRPSSRVGRCWGLKLVFQDGKVSGPVHRAQLWQLVEQP*KTKPEFADNRHAP 101
K I IR S V R K +FQ ++ + RA LW+L+++P K+KP+ A++ H P
Sbjct: 1016 DKNIYAREIRFPSGVARAGCFKFIFQYIQICSTIDRA*LWKLIQKPRKSKPDLANH*HPP 837
Query: 100 EPNGILILVLNSPCKEQTKDGHADKNEKPVWAE 2
+P+ +++ + + P +E K+ + +KNEKP+W +
Sbjct: 836 QPDCVVVWMHDPPLQE*CKNNNPNKNEKPIWTD 738
Score = 27.6 bits (54), Expect(2) = 7e-063
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -1 / -1
Query: 641 HQSVGVSSQADH*S*P*TRHTXXXXXXXX*QNPGEPCSCMGPS 513
HQ G +QA + P*T H *QN CSC PS
Sbjct: 1377 HQIGGE*NQASYLFEP*THHIHALLFDDP*QNLASLCSCKDPS 1249
>gb|AY162180.1| Populus tremuloides cellulose synthase (CesA7) mRNA, complete cds
Length = 3809
Score = 207 bits (447), Expect(2) = 1e-074
Identities = 81/127 (63%), Positives = 103/127 (81%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+L +D+FVST DP KEPPL+TANT+LSILA DYPV+K++CYVSDDG A+LTFEA++E
Sbjct: 1257 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSET 1436
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K NIEPR P+ YF+ K D KNKV FV++RR +KREY+EFKVRING
Sbjct: 1437 SEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRING 1616
Query: 611 LPDSIRR 631
L + ++
Sbjct: 1617 LVSTAQK 1637
Score = 92.7 bits (196), Expect(2) = 1e-074
Identities = 33/73 (45%), Positives = 50/73 (68%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ ++G+F +RI H DA LW SV+CE+WF SW+LDQ PK P+
Sbjct: 1023 INPYRMIIILRLVIIGIFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIE 1202
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1203 RETYLDRLSLRYE 1241
>gb|AY573575.1| Populus tremula x Populus tremuloides cellulose synthase (CesA4)
mRNA, complete cds
Length = 3778
Score = 207 bits (447), Expect(2) = 1e-074
Identities = 81/127 (63%), Positives = 103/127 (81%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+L +D+FVST DP KEPPL+TANT+LSILA DYPV+K++CYVSDDG A+LTFEA++E
Sbjct: 1291 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSET 1470
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K NIEPR P+ YF+ K D KNKV FV++RR +KREY+EFKVRING
Sbjct: 1471 SEFARKWVPFCKKFNIEPRAPEWYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRING 1650
Query: 611 LPDSIRR 631
L + ++
Sbjct: 1651 LVSTAQK 1671
Score = 92.3 bits (195), Expect(2) = 1e-074
Identities = 33/73 (45%), Positives = 50/73 (68%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
+SPYR++I++R+ ++G+F+ +RI H DA LW V+CE+WF SW+LDQ PK P+
Sbjct: 1057 ISPYRMIIILRLLIIGIFIHYRILHPVNDAYGLWLTLVICEIWFAVSWILDQFPKWYPIE 1236
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1237 RVTYLDRLSLRYE 1275
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 198 bits (427), Expect(2) = 4e-073
Identities = 77/121 (63%), Positives = 99/121 (81%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S+L +D+FVST DP KEPPL+TANT+LSILA DYPVEK++CYVSDDG A+LTFEA++E
Sbjct: 1538 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEAISET 1717
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC++ +IEPR P+ YF K D K++V F+++RR +KREY+EFKVRING
Sbjct: 1718 SEFARKWVPFCKRFSIEPRAPEWYFAQKVDYLKDRVDPAFIRERRAMKREYEEFKVRING 1897
Query: 611 L 613
L
Sbjct: 1898 L 1900
Score = 96.8 bits (205), Expect(2) = 4e-073
Identities = 37/73 (50%), Positives = 50/73 (68%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
+SPYRL+I++R+ +LGLF +RI H DA LW SV+CE+WF SW+LDQ PK P+
Sbjct: 1304 ISPYRLIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIE 1483
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1484 RETYLDRLSLRYE 1522
Score = 83.1 bits (175), Expect(2) = 5e-022
Identities = 42/73 (57%), Positives = 45/73 (61%)
Frame = -3 / -2
Query: 468 LRQKGTHIXXXXXXXXXXXKVRRAPPSSET*QESFSTG*SAARMDRIVFAVTSGGSFSGS 289
L QKGTH KV A PSSET* +FSTG*S ARMD+ VFAV SGGSF GS
Sbjct: 1755 LLQKGTHFLANSDVSEIASKVSMAAPSSET*HATFSTG*STARMDKTVFAVISGGSFIGS 1576
Query: 288 AVDTNISSPGKSD 250
V TN S+ SD
Sbjct: 1575 TVLTNTSTLASSD 1537
Score = 40.9 bits (83), Expect(2) = 5e-022
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = -3 / -2
Query: 219 SNLSFRTARSVARFTGHSFGSWSSSHEKPNQSSQTTDMPQSQMASSFLCLILHVRNRPRT 40
S L+ +R V+R G+ FG+ S+ E N SQ TD+ + AS IL + RPR
Sbjct: 1521 SYLNDNLSRYVSRSIGYHFGN*SNIQETANHISQITDVSHNP*ASLTG*RIL**KKRPRI 1342
Query: 39 AMRIRMRSLYGL 4
M +LYGL
Sbjct: 1341 TSLSIMINLYGL 1306
>gb|AY095297.1| Populus tremuloides cellulose synthase (CesA2) mRNA, complete cds
Length = 3277
Score = 202 bits (436), Expect(2) = 4e-073
Identities = 81/123 (65%), Positives = 98/123 (79%)
Frame = +2 / +3
Query: 245 GRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMA 424
G + L +D+FVST DP KEPPLVT NT+LSILA DYPVEK+SCY+SDDG ++ TFEAM+
Sbjct: 984 GPNMLAPVDVFVSTVDPMKEPPLVTGNTLLSILAMDYPVEKISCYLSDDGASMCTFEAMS 1163
Query: 425 EAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRI 604
E A FA WVPFC+K NIEPR P+ YF LK D K+KV+ FVK+RR +KREY+EFKVRI
Sbjct: 1164 ETAEFARKWVPFCKKFNIEPRAPEFYFTLKVDYLKDKVQPTFVKERRAMKREYEEFKVRI 1343
Query: 605 NGL 613
N +
Sbjct: 1344 NAI 1352
Score = 92.7 bits (196), Expect(2) = 4e-073
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+ R+ +L +FL +RI H DA+ LW S+VCE+WF SW+LDQ PK P++
Sbjct: 756 INPYRMVIVARLIILAVFLRYRILHPVHDALGLWLTSIVCEIWFAISWILDQFPKWLPID 935
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 936 RETYLDRLSLRYE 974
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 200 bits (431), Expect(2) = 7e-073
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DI+VST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 1118 SQLCPVDIYVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 1297
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ FA WVPFC+K +IEPR P+ YF+ K D K+KV+ FVK+RR +KREY+EFK+RIN
Sbjct: 1298 SEFAKKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQASFVKERRAMKREYEEFKIRINA 1477
Query: 611 L 613
L
Sbjct: 1478 L 1480
Score = 94.1 bits (199), Expect(2) = 7e-073
Identities = 33/73 (45%), Positives = 51/73 (69%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ V+G F +R+ H DA LW +SV+CE+WF SW+LDQ PK P++
Sbjct: 884 INPYRMIIIVRLVVVGFFFHYRVTHPVNDAFALWLISVICEIWFAVSWILDQFPKWLPID 1063
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 1064 RETYLDRLSLRYE 1102
>gb|AY573574.1| Populus tremula x Populus tremuloides cellulose synthase (CesA3-2)
mRNA, complete cds
Length = 3358
Score = 199 bits (428), Expect(2) = 9e-073
Identities = 76/121 (62%), Positives = 99/121 (81%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L G+D FVST DP K+PPL+TANT+LSILA DYPV+K+SCYVSDDG A+L+FE++ E
Sbjct: 871 SQLAGVDFFVSTVDPLKDPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVET 1050
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+K++IEPR P+ YF+ K D K+KV+ FVK+RR +KR+Y+E+KVR+N
Sbjct: 1051 AEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNA 1230
Query: 611 L 613
L
Sbjct: 1231 L 1233
Score = 95.0 bits (201), Expect(2) = 9e-073
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR +I++R+ +LGLF +RI + + A LW SV+CE+WF FSW+LDQ PK PVN
Sbjct: 637 LTPYRAVIIMRLVILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWNPVN 816
Query: 182 RATDLAVLKDKFE 220
R T + L ++E
Sbjct: 817 RETYIERLSARYE 855
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 199 bits (429), Expect(2) = 9e-073
Identities = 78/130 (60%), Positives = 100/130 (76%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +D FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+LTFE++ E
Sbjct: 788 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVET 967
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+K +IEPR P+ YF+ K D K+KV+ FVK+RR +KR+Y+E+KVR+N
Sbjct: 968 AEFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNA 1147
Query: 611 LPDSIRRRSD 640
L ++ D
Sbjct: 1148 LVPKAQKTPD 1177
Score = 94.5 bits (200), Expect(2) = 9e-073
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR +I++R+ +LGLF +RI + + A LW SV+CE+WF FSW+LDQ PK PVN
Sbjct: 554 LTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWKPVN 733
Query: 182 RATDLAVLKDKFE 220
R T + L ++E
Sbjct: 734 RETFIERLSARYE 772
>gb|AF072131.1|AF072131 Populus tremuloides secondary xylem cellulose synthase (celA) mRNA,
complete cds
Length = 3232
Score = 199 bits (428), Expect(2) = 1e-072
Identities = 77/121 (63%), Positives = 98/121 (80%)
Frame = +2 / +3
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L G+D FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+L+FE++ E
Sbjct: 810 SQLAGVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVET 989
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+K +IEPR P+ YF+ K D K+KV+ FVK+RR +KR+Y+E+KVR+N
Sbjct: 990 AEFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNA 1169
Query: 611 L 613
L
Sbjct: 1170 L 1172
Score = 94.5 bits (200), Expect(2) = 1e-072
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR +I++R+ +LGLF +RI + + A LW SV+CE+WF FSW+LDQ PK PVN
Sbjct: 576 LTPYRAVIIMRLVILGLFFHFRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWNPVN 755
Query: 182 RATDLAVLKDKFE 220
R T + L ++E
Sbjct: 756 RETYIERLSARYE 794
>gb|DQ004570.1| Populus tomentosa cellulose synthase (cesa1) mRNA, complete cds
Length = 3215
Score = 199 bits (428), Expect(2) = 1e-072
Identities = 77/121 (63%), Positives = 98/121 (80%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L G+D FVST DP KEPPL+TANT+LSILA DYPV+K+SCYVSDDG A+L+FE++ E
Sbjct: 793 SQLAGVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVET 972
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA WVPFC+K +IEPR P+ YF+ K D K+KV+ FVK+RR +KR+Y+E+KVR+N
Sbjct: 973 AEFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNA 1152
Query: 611 L 613
L
Sbjct: 1153 L 1155
Score = 94.5 bits (200), Expect(2) = 1e-072
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR +I++R+ +LGLF +RI + + A LW SV+CE+WF FSW+LDQ PK PVN
Sbjct: 559 LTPYRAVIIMRLVILGLFFHFRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWNPVN 738
Query: 182 RATDLAVLKDKFE 220
R T + L ++E
Sbjct: 739 RETYIERLSARYE 777
>gb|AF081534.1|AF081534 Populus x canescens cellulose synthase (cel1) mRNA, complete cds
Length = 3395
Score = 200 bits (432), Expect(2) = 6e-072
Identities = 76/125 (60%), Positives = 100/125 (80%)
Frame = +2 / +3
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D+FVST DP KEPP++TANT+LSIL+ DYPV+K+SCYVSDDG ++L F+++AE A FA
Sbjct: 927 VDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFAR 1106
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSI 625
WVPFC+KHNIEPR P+ YF K D K+KV +FVK+RR +KREY+EFKVRIN L
Sbjct: 1107 KWVPFCKKHNIEPRAPEFYFTQKIDYLKDKVHPNFVKERRAMKREYEEFKVRINALVSKA 1286
Query: 626 RRRSD 640
+++ +
Sbjct: 1287 QKKPE 1301
Score = 90.4 bits (191), Expect(2) = 6e-072
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +L F +RI DA LW +SV+CE+WFG SW+LDQ PK P+
Sbjct: 678 INPYRIVIVLRLIILCFFFRFRILTPASDAYALWLISVICEVWFGLSWILDQFPKWNPIE 857
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L +FE N G D+
Sbjct: 858 RETYLDRLSMRFEREGEPNRLGPVDV 935
>gb|AY573571.1| Populus tremula x Populus tremuloides cellulose synthase (CesA1)
mRNA, complete cds
Length = 3472
Score = 200 bits (432), Expect(2) = 4e-071
Identities = 76/125 (60%), Positives = 100/125 (80%)
Frame = +2 / +3
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D+FVST DP KEPP++TANT+LSIL+ DYPV+K+SCYVSDDG ++L F+++AE A FA
Sbjct: 1011 VDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFAR 1190
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSI 625
WVPFC+KHNIEPR P+ YF K D K+KV +FVK+RR +KREY+EFKVRIN L
Sbjct: 1191 RWVPFCKKHNIEPRAPEFYFTQKIDYLKDKVHPNFVKERRAMKREYEEFKVRINALVSKA 1370
Query: 626 RRRSD 640
+++ +
Sbjct: 1371 QKKPE 1385
Score = 87.7 bits (185), Expect(2) = 4e-071
Identities = 36/86 (41%), Positives = 52/86 (60%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR +I++R+ +L F +RI DA LW +SV+CE+WFG SW+LD+ PK P+
Sbjct: 762 INPYRFVIVLRLIILCFFFRFRILTPASDAYALWLISVICEVWFGLSWILDRFPKWNPIE 941
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L +FE N G D+
Sbjct: 942 RETYLDRLSMRFEREGEPNRLGPVDV 1019
>gb|CK318831.1|CK318831 X9P03h01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 727
Score = 200 bits (431), Expect(2) = 4e-071
Identities = 76/125 (60%), Positives = 100/125 (80%)
Frame = +2 / +3
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D+FVST DP KEPP++TANT+LSIL+ DYPV+K+SCYVSDDG ++L F+++AE A FA
Sbjct: 258 VDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFAR 437
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSI 625
WVPFC+KHNIEPR P+ YF K D K+KV +FVK+RR +KREY+EFKVRIN L
Sbjct: 438 RWVPFCKKHNIEPRAPEFYFTQKIDYLKDKVHPNFVKERRAMKREYEEFKVRINALVPKA 617
Query: 626 RRRSD 640
+++ +
Sbjct: 618 QKKPE 632
Score = 88.1 bits (186), Expect(2) = 4e-071
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +L F +RI DA LW +SV+CE+WFG SW+LDQ P+ P+
Sbjct: 9 INPYRIVIVLRLIILCFFFRFRILTPAYDAYALWLISVICEVWFGLSWILDQFPRWNPIE 188
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L +FE N G D+
Sbjct: 189 RETYLDRLSMRFEREGEPNRLGPVDV 266
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 190 bits (409), Expect(2) = 3e-070
Identities = 78/121 (64%), Positives = 95/121 (78%)
Frame = +2 / +1
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPP+VTANT+LSILA DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 1087 SQLAPIDIFVSTVDPMKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSET 1266
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
A FA C+KHNIEPR P+ YF K D ++K++ FVK+RR +KREY+EFKVRIN
Sbjct: 1267 AEFARKRRLSCKKHNIEPRAPEFYFAQKMDYLEDKIQPSFVKERRAMKREYEEFKVRINA 1446
Query: 611 L 613
L
Sbjct: 1447 L 1449
Score = 95.5 bits (202), Expect(2) = 3e-070
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +2 / +1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
L+PYR+ I++R+ +LG FL +R+ H +DA LW SV+CE+WF SWLLDQ PK P+N
Sbjct: 853 LTPYRVGIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWMPIN 1032
Query: 182 RATDLAVLKDKFE 220
R T L L +++
Sbjct: 1033 RETYLDRLALRYD 1071
>gb|AF527387.1| Populus tremuloides xylem-specific cellulose synthase (CesA3) mRNA,
complete cds
Length = 3401
Score = 200 bits (432), Expect(2) = 5e-069
Identities = 76/125 (60%), Positives = 100/125 (80%)
Frame = +2 / +3
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D+FVST DP KEPP++TANT+LSIL+ DYPV+K+SCYVSDDG ++L F+++AE A FA
Sbjct: 939 VDVFVSTVDPLKEPPIITANTVLSILSVDYPVDKVSCYVSDDGASMLLFDSLAETAEFAR 1118
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSI 625
WVPFC+KHNIEPR P+ YF K D K+KV +FVK+RR +KREY+EFKVRIN L
Sbjct: 1119 RWVPFCKKHNIEPRAPEFYFTQKIDYLKDKVHPNFVKERRAMKREYEEFKVRINALVSKA 1298
Query: 626 RRRSD 640
+++ +
Sbjct: 1299 QKKPE 1313
Score = 80.8 bits (170), Expect(2) = 5e-069
Identities = 35/86 (40%), Positives = 51/86 (59%)
Frame = +2 / +3
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ +L F + I DA L +SV+CE+WFG SW+LDQ PK P+
Sbjct: 690 INPYRIVIVLRLIILCFFFRFWILTPASDAYALGLISVICEVWFGLSWILDQFPKWNPIE 869
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L +FE N G D+
Sbjct: 870 RETYLDRLSMRFEREGEPNRLGPVDV 947
>gb|CK101560.1|CK101560 F099P76.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F099P76 5', mRNA sequence
Length = 582
Score = 233 bits (503), Expect = 9e-061
Identities = 94/115 (81%), Positives = 105/115 (91%)
Frame = +2 / +2
Query: 299 KEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNI 478
KEPPLVTANTILSILA DYPVEKL+CY+SDDGG+LLTFEA+AE ASFA +WVPFCRKHNI
Sbjct: 20 KEPPLVTANTILSILAVDYPVEKLACYLSDDGGSLLTFEALAETASFARIWVPFCRKHNI 199
Query: 479 EPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
EPRNP++YF K+D KNKVR DFV++RRRVKREYDEFKVRIN L +SIRRRSDA
Sbjct: 200 EPRNPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLTESIRRRSDA 364
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 161 bits (347), Expect(2) = 1e-060
Identities = 65/96 (67%), Positives = 78/96 (81%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIFVST DP KEPPLVTANT+LSILA DYPV+K+SCYVSDDG A+LTFEA++E
Sbjct: 614 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEAISET 793
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
+ FA WVPFC+K++IEPR P+ YF K D K+KV
Sbjct: 794 SEFARKWVPFCKKYDIEPRAPEWYFAQKIDYLKDKV 901
Score = 91.8 bits (194), Expect(2) = 1e-060
Identities = 35/73 (47%), Positives = 52/73 (71%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I++R+ VL +FL +R+ + DA LW +SV+CE+WF SW+LDQ PK PVN
Sbjct: 380 INPYRMVIVLRLVVLCIFLHYRLTNPVRDAYALWLISVICEIWFAISWILDQFPKWLPVN 559
Query: 182 RATDLAVLKDKFE 220
R T L L ++E
Sbjct: 560 RETYLDRLSLRYE 598
>gb|CF236447.1|CF236447 PtaJXT2H2H0216 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 637
Score = 144 bits (309), Expect(2) = 5e-056
Identities = 59/92 (64%), Positives = 69/92 (75%)
Frame = +2 / +2
Query: 257 LPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAAS 436
L +DIFVST DP KEPPLVT NTILSILA DYPVEK+SCY+SDDG ++ TF AM+ A
Sbjct: 359 LAPVDIFVSTVDPMKEPPLVTGNTILSILAMDYPVEKISCYLSDDGASMCTFXAMSXTAE 538
Query: 437 FANMWVPFCRKHNIEPRNPDSYFNLKKDPYKN 532
FA WVPFC ++I PR P+ YF LK D K+
Sbjct: 539 FARXWVPFCXXYSIXPRAPEFYFALKIDYLKD 634
Score = 93.6 bits (198), Expect(2) = 5e-056
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +2 / +2
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+ R+ +L FL +RI H DAI LW S+VCE+WF SW+LDQ PK P++
Sbjct: 119 INPYRMVIVARLIILAFFLRYRILHPVHDAIGLWLTSIVCEIWFAISWILDQFPKWLPID 298
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L ++E N D+
Sbjct: 299 RETYLDRLSLRYEREGEPNMLAPVDI 376
>gb|CK091431.1|CK091431 F099P76.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F099P76 3', mRNA sequence
Length = 668
Score = 212 bits (458), Expect = 1e-054
Identities = 86/115 (74%), Positives = 99/115 (86%)
Frame = +2 / -2
Query: 299 KEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNI 478
KEPPLVTANTIL I+A DYPVE+L+CY+SDDGG+LLTFEA+ E ASFA +WVP CR HNI
Sbjct: 649 KEPPLVTANTIL*IVAVDYPVEELACYLSDDGGSLLTFEALDETASFARIWVPLCRTHNI 470
Query: 479 EPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDA 643
PR P++YF K+D KNKVR DFV++RRRVKREYDEFKVRIN L +SIRRRSDA
Sbjct: 469 APRTPEAYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLTESIRRRSDA 305
>gb|CV228438.1|CV228438 WS01910.B21_B15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01910_B15 3', mRNA sequence
Length = 677
Score = 134 bits (287), Expect(2) = 2e-053
Identities = 52/70 (74%), Positives = 60/70 (85%)
Frame = +2 / -1
Query: 269 DIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANM 448
DIFVST DP KEPPLVT NTILSILA DYPVEK+SCY+SDDG ++ TFEAM+E A FA
Sbjct: 212 DIFVSTVDPMKEPPLVTGNTILSILAMDYPVEKISCYLSDDGASMCTFEAMSETAEFARK 33
Query: 449 WVPFCRKHNI 478
WVPFC+K++I
Sbjct: 32 WVPFCKKYSI 3
Score = 95.0 bits (201), Expect(2) = 2e-053
Identities = 37/86 (43%), Positives = 54/86 (62%)
Frame = +2 / -1
Query: 2 LSPYRLLILIRMAVLGLFLTWRIKHKNEDAIWLWGMSVVCELWFGFSWLLDQLPKLCPVN 181
++PYR++I+ R+ +L FL +RI H DAI LW S+VCE+WF SW+LDQ PK P++
Sbjct: 464 INPYRMVIVARLIILAFFLRYRILHPVHDAIGLWLTSIVCEIWFAISWILDQFPKWLPID 285
Query: 182 RATDLAVLKDKFETPTPSNPTGRSDL 259
R T L L ++E N +D+
Sbjct: 284 RETYLDRLSLRYEREGEPNMLAPADI 207
>gb|AY055724.2| Populus tremuloides cellulose synthase (CesA5) mRNA, complete cds
Length = 3532
Score = 180 bits (387), Expect(2) = 2e-048
Identities = 73/121 (60%), Positives = 93/121 (76%)
Frame = +2 / +2
Query: 251 SDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEA 430
S L +DIF + KEPPLV AN +LSILA D P++K+SCYVSDDG A+LTFEA++E
Sbjct: 1268 SHLVVVDIFARSGVHLKEPPLVPANAVLSILAGDSPIDKVSCYVSDDGAAMLTFEALSET 1447
Query: 431 ASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKREYDEFKVRING 610
+ F+ WVPFC+K++IEPR P+ YF K D K+KV+ FVKDRR +KREY+EFK+RING
Sbjct: 1448 SEFSRKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRING 1627
Query: 611 L 613
L
Sbjct: 1628 L 1630
Score = 32.7 bits (65), Expect(2) = 2e-048
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2 / +2
Query: 128 WFGFSWLLDQLPKLCPVNRATDLAVLKDKFE 220
WF S +LDQ PK P NR T L L +++
Sbjct: 1160 WFAISRILDQFPKWLPGNRETYLDRLALRYD 1252
>gb|BI138150.1|BI138150 F099P76Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 452
Score = 189 bits (407), Expect = 2e-047
Identities = 75/94 (79%), Positives = 85/94 (90%)
Frame = +2 / +3
Query: 299 KEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNI 478
KEPPLVTANTILSILA DYPVEKL+CY+SDDGG+LLTFEA+AE ASFA +WVPFCRKHNI
Sbjct: 21 KEPPLVTANTILSILAVDYPVEKLACYLSDDGGSLLTFEALAETASFARIWVPFCRKHNI 200
Query: 479 EPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKRE 580
EPRNP++YF K+D KNKVR DFV++RRRV RE
Sbjct: 201 EPRNPEAYFGQKRDFLKNKVRLDFVRERRRVTRE 302
>gb|AJ779945.1|AJ779945 AJ779945 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800009G06F1, mRNA sequence
Length = 735
Score = 146 bits (313), Expect = 1e-034
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +2 / +1
Query: 359 VEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
V+K+SCYVSDDG A+LTFEA++E A FA WVPFC+KHNIEPR P+ YF+ K D K+K+
Sbjct: 16 VDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFSQKIDYLKDKI 195
Query: 539 RQDFVKDRRRVKREYDEFKVRINGL 613
+ FVK+RR +KREY+EFKVRIN L
Sbjct: 196 QPSFVKERRAMKREYEEFKVRINAL 270
>gb|BI130668.1|BI130668 G109P08Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 336
Score = 144 bits (310), Expect = 4e-034
Identities = 54/91 (59%), Positives = 73/91 (80%)
Frame = +2 / +3
Query: 266 LDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFAN 445
+D+ VST DP KEPP++TANT+LSIL+ + PV+++SCYVSDDG ++L F+++AE A FA
Sbjct: 57 VDVCVSTVDPLKEPPIITANTVLSILSVEDPVDEVSCYVSDDGASMLLFDSLAETAEFAR 236
Query: 446 MWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
WVPFC+KHNIEPR P+ YF K D K++V
Sbjct: 237 RWVPFCKKHNIEPRAPEFYFTQKIDYLKDRV 329
>gb|BU823358.1|BU823358 UB51DPD11 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 609
Score = 144 bits (310), Expect = 4e-034
Identities = 56/85 (65%), Positives = 69/85 (81%)
Frame = +2 / +2
Query: 359 VEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
V+K+SCYVSDDG A+LTFEA++E A FA WVPFC+KHNIEPR P+ YF K D K+K+
Sbjct: 8 VDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKI 187
Query: 539 RQDFVKDRRRVKREYDEFKVRINGL 613
+ FVK+RR +KREY+EFKVRIN L
Sbjct: 188 QPSFVKERRAMKREYEEFKVRINAL 262
>gb|DT507488.1|DT507488 WS02418.BR_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_G10 5', mRNA sequence
Length = 855
Score = 144 bits (308), Expect = 7e-034
Identities = 57/111 (51%), Positives = 74/111 (66%)
Frame = +2 / +3
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
RSD P LD+F+ TADP KEPP+ NT LS++A DYP EK+S YVSDDGG+ LT A E
Sbjct: 327 RSDFPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFAFME 506
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKRE 580
A+ FA W+PFC+K+NI+ R+P++YF L V + + RVK E
Sbjct: 507 ASKFATHWLPFCKKNNIQERSPEAYFELNHTCTSEAVNIKIIYESMRVKVE 659
>gb|DT512116.1|DT512116 WS02418.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_G10 3', mRNA sequence
Length = 845
Score = 144 bits (308), Expect = 7e-034
Identities = 57/111 (51%), Positives = 74/111 (66%)
Frame = +2 / -2
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
RSD P LD+F+ TADP KEPP+ NT LS++A DYP EK+S YVSDDGG+ LT A E
Sbjct: 637 RSDFPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFAFME 458
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKRE 580
A+ FA W+PFC+K+NI+ R+P++YF L V + + RVK E
Sbjct: 457 ASKFATHWLPFCKKNNIQERSPEAYFELNHTCTSEAVNIKIIYESMRVKVE 305
>gb|AJ778214.1|AJ778214 AJ778214 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400040H10F1, mRNA sequence
Length = 612
Score = 142 bits (305), Expect = 2e-033
Identities = 55/85 (64%), Positives = 69/85 (81%)
Frame = +2 / +2
Query: 359 VEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKV 538
V+K+SCYVSDDG A+LTFEA++E A FA WVPFC+KH+IEPR P+ YF K D K+K+
Sbjct: 14 VDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHSIEPRAPEFYFAQKIDYLKDKI 193
Query: 539 RQDFVKDRRRVKREYDEFKVRINGL 613
+ FVK+RR +KREY+EFKVRIN L
Sbjct: 194 QPSFVKERRAMKREYEEFKVRINAL 268
>gb|AJ779545.1|AJ779545 AJ779545 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800003H02F1, mRNA sequence
Length = 713
Score = 141 bits (302), Expect = 5e-033
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +2 / +2
Query: 368 LSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQD 547
+SCYVSDDG A+LTFEA++E A FA WVPFC+KHNIEPR P+ YF+ K D K+K++
Sbjct: 2 VSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFSQKIDYLKDKIQPS 181
Query: 548 FVKDRRRVKREYDEFKVRINGL 613
FVK+RR +KREY+EFKVRIN L
Sbjct: 182 FVKERRAMKREYEEFKVRINAL 247
>gb|DT477686.1|DT477686 WS02520.BR_K21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_K21 5', mRNA sequence
Length = 837
Score = 133 bits (286), Expect(2) = 6e-033
Identities = 50/93 (53%), Positives = 69/93 (74%)
Frame = +2 / +3
Query: 230 PSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLT 409
PS +LP +DIFV+TADP EPP++T NT++S+LA DYP +KL+CYVSDDG + T
Sbjct: 276 PSPINRIQELPPVDIFVTTADPVLEPPILTVNTVISLLAVDYPADKLACYVSDDGCSPTT 455
Query: 410 FEAMAEAASFANMWVPFCRKHNIEPRNPDSYFN 508
+ ++ EA+ FA +W PFC+KHNI+ R P YF+
Sbjct: 456 YYSLVEASKFAKLWAPFCKKHNIQVRAPFRYFS 554
Score = 29.0 bits (57), Expect(2) = 6e-033
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2 / +1
Query: 101 WGMSVVCELWFGFSWLLDQLPKLCPVNRAT 190
W ++++CE F F+W+L K PV T
Sbjct: 25 WLLALLCETCFTFTWVLTVSSKWNPVEYKT 114
>gb|DT482749.1|DT482749 WS02520.B21_K21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_K21 3', mRNA sequence
Length = 838
Score = 133 bits (286), Expect(2) = 6e-033
Identities = 50/93 (53%), Positives = 69/93 (74%)
Frame = +2 / -3
Query: 230 PSNPTGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLT 409
PS +LP +DIFV+TADP EPP++T NT++S+LA DYP +KL+CYVSDDG + T
Sbjct: 563 PSPINRIQELPPVDIFVTTADPVLEPPILTVNTVISLLAVDYPADKLACYVSDDGCSPTT 384
Query: 410 FEAMAEAASFANMWVPFCRKHNIEPRNPDSYFN 508
+ ++ EA+ FA +W PFC+KHNI+ R P YF+
Sbjct: 383 YYSLVEASKFAKLWAPFCKKHNIQVRAPFRYFS 285
Score = 29.0 bits (57), Expect(2) = 6e-033
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2 / -1
Query: 101 WGMSVVCELWFGFSWLLDQLPKLCPVNRAT 190
W ++++CE F F+W+L K PV T
Sbjct: 814 WLLALLCETCFTFTWVLTVSSKWNPVEYKT 725
>gb|DN486460.1|DN486460 P029E09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P029E09 3', mRNA sequence
Length = 792
Score = 133 bits (286), Expect = 8e-031
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2 / -1
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
RSD P LD+F+ TADP KEPP+ NT LS++A DYP EK+S YVSDDGG+ LT A E
Sbjct: 630 RSDFPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFAFME 451
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKRE 580
AA FA W+PFC+K+NI R+P++ F + + + +VK E
Sbjct: 450 AAKFATHWLPFCKKNNILERSPEALFESNHPCTSESEKIKIIYESMKVKVE 298
>gb|DN496021.1|DN496021 P029E09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P029E09 5', mRNA sequence
Length = 871
Score = 133 bits (286), Expect = 8e-031
Identities = 54/111 (48%), Positives = 71/111 (63%)
Frame = +2 / +2
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
RSD P LD+F+ TADP KEPP+ NT LS++A DYP EK+S YVSDDGG+ LT A E
Sbjct: 347 RSDFPALDVFICTADPYKEPPISVVNTALSVMAYDYPTEKISVYVSDDGGSALTLFAFME 526
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQDFVKDRRRVKRE 580
AA FA W+PFC+K+NI R+P++ F + + + +VK E
Sbjct: 527 AAKFATHWLPFCKKNNILERSPEALFESNHPCTSESEKIKIIYESMKVKVE 679
>gb|DT505698.1|DT505698 WS01811.C21_J23 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_J23 3', mRNA sequence
Length = 837
Score = 131 bits (280), Expect = 5e-030
Identities = 50/86 (58%), Positives = 63/86 (73%)
Frame = +2 / -2
Query: 248 RSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAE 427
RSD P D+FV TADP KEPP+ NT LS++A DYP EK+S Y+SDDGG+ LT A E
Sbjct: 800 RSDFPAFDVFVCTADPYKEPPIGVVNTALSVMAYDYPTEKISVYISDDGGSALTLFAFME 621
Query: 428 AASFANMWVPFCRKHNIEPRNPDSYF 505
AA FA W+PFC+K+NI R+P++ F
Sbjct: 620 AAKFATHWLPFCKKNNILERSPEALF 543
>gb|CK107258.1|CK107258 UB51DPD11.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPD11 5', mRNA sequence
Length = 596
Score = 127 bits (271), Expect = 9e-029
Identities = 50/83 (60%), Positives = 61/83 (73%)
Frame = +2 / +3
Query: 365 KLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFNLKKDPYKNKVRQ 544
K DDG A+LTFEA++E A FA WVPFC+KHNIEPR P+ YF K D K+K++
Sbjct: 12 KYHAMFQDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQP 191
Query: 545 DFVKDRRRVKREYDEFKVRINGL 613
FVK+RR +KREY+EFKVRIN L
Sbjct: 192 SFVKERRAMKREYEEFKVRINAL 260
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 307,960,667
Number of Sequences: 369679
Number of extensions: 4378919
Number of successful extensions: 51910
Number of sequences better than 1.0e-020: 41
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7978729217
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)