TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF31c07.yg.2.3
         (732 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN523355.1|CN523355  GQ015M12.T3_C12 GQ015 Populus tricho...   106   2e-022
gb|DN501916.1|DN501916  V037F03.5pR Populus male catkins cDN...   106   2e-022
gb|DT479421.1|DT479421  WS02525.BR_N02 PT-MB-N-A-15 Populus ...   106   2e-022
gb|BU877658.1|BU877658  V037F03 Populus flower cDNA library ...   103   2e-021

>gb|CN523355.1|CN523355 GQ015M12.T3_C12 GQ015 Populus trichocarpa x Populus deltoides cDNA
           clone GQ015M12_C12 5', mRNA sequence
          Length = 817

 Score =  106 bits (226), Expect = 2e-022
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = +2 / +3

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMV+FPNY S
Sbjct: 354 MARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVVFPNYES 503



>gb|DN501916.1|DN501916 V037F03.5pR Populus male catkins cDNA library Populus trichocarpa
           cDNA clone V037F03 5', mRNA sequence
          Length = 663

 Score =  106 bits (226), Expect = 2e-022
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = +2 / +1

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMV+FPNY S
Sbjct: 199 MARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVVFPNYES 348



>gb|DT479421.1|DT479421 WS02525.BR_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02525_N02 5', mRNA sequence
          Length = 910

 Score =  106 bits (226), Expect = 2e-022
 Identities = 41/50 (82%), Positives = 47/50 (94%)
 Frame = +2 / +2

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDMV+FPNY S
Sbjct: 752 MARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMVVFPNYES 901



>gb|BU877658.1|BU877658 V037F03 Populus flower cDNA library Populus trichocarpa cDNA 5
           prime, mRNA sequence
          Length = 475

 Score =  103 bits (219), Expect = 2e-021
 Identities = 40/50 (80%), Positives = 46/50 (92%)
 Frame = +2 / +3

                                                             
Query: 383 LSQDARMDWIIHLDTDELIHPAGAREYSLRRLLLDVPDNVDMVIFPNYVS 532
           +++DA MDWI+HLDTDELIHPAGAREYSLR+LLLDVP NVDM +FPNY S
Sbjct: 150 MARDAGMDWILHLDTDELIHPAGAREYSLRQLLLDVPGNVDMDVFPNYES 299



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 295,839,933
Number of Sequences: 369679
Number of extensions: 3742130
Number of successful extensions: 28777
Number of sequences better than 1.0e-020: 5
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9278699780
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)