TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN523355.1|CN523355 GQ015M12.T3_C12 GQ015 Populus tricho... 84 2e-033
gb|DT479421.1|DT479421 WS02525.BR_N02 PT-MB-N-A-15 Populus ... 80 2e-032
gb|CV256577.1|CV256577 WS0244.B21_D22 PTxD-ICC-N-A-14 Popul... 80 3e-021
gb|BU820189.1|BU820189 UA52DPC06 Populus tremula cambium cD... 84 3e-016
gb|BU877658.1|BU877658 V037F03 Populus flower cDNA library ... 77 4e-014
gb|DN501916.1|DN501916 V037F03.5pR Populus male catkins cDN... 60 5e-010
gb|CX181915.1|CX181915 C08_45-94_06.ab1 leaf inoculated wit... 63 8e-010
gb|CK106051.1|CK106051 UA52DPC06.5pR Populus dormant cambiu... 56 9e-008
gb|CN523101.1|CN523101 GQ0121.B3_P03 GQ012 Populus trichoca... 48 2e-005
gb|CX657459.1|CX657459 PO02047B05 Poplar SC cDNA library Po... 35 0.27
gb|DN498818.1|DN498818 S075G04.5pR Populus imbibed seed cDN... 33 0.70
gb|CX170967.1|CX170967 E11_69-69_09.ab1 leaf inoculated wit... 32 1.3
gb|CA926808.1|CA926808 MTU6CR.P1.D07 Aspen root cDNA Librar... 32 1.8
gb|CA926825.1|CA926825 MTU6CR.P1.F01 Aspen root cDNA Librar... 32 1.8
gb|CA926845.1|CA926845 MTU6CR.P1.H05 Aspen root cDNA Librar... 32 1.8
gb|CK095810.1|CK095810 UA30CPD05.3pR Populus dormant cambiu... 31 2.5
gb|CV243984.1|CV243984 WS0253.B21_G12 PT-MB-N-A-15 Populus ... 31 2.5
gb|CV257418.1|CV257418 WS0246.B21_J20 PTxD-ICC-N-A-14 Popul... 31 2.5
gb|DT492202.1|DT492202 WS02549.C21_O23 PT-MB-N-A-15 Populus... 31 2.5
gb|DT505172.1|DT505172 WS01810.C21_D12 PTxD-IL-N-A-9 Populu... 31 2.5
gb|AJ780386.1|AJ780386 AJ780386 Populus euphratica leaf 3-6... 31 3.4
gb|AJ780744.1|AJ780744 AJ780744 Populus euphratica leaf 3-6... 31 3.4
gb|CV241894.1|CV241894 WS02513.B21_I21 PT-MB-N-A-15 Populus... 31 3.4
gb|DT482731.1|DT482731 WS02520.B21_K03 PT-MB-N-A-15 Populus... 31 3.4
gb|CV274626.1|CV274626 WS0173.B21_O07 PTxD-NR-A-8 Populus t... 30 4.7
gb|DT499145.1|DT499145 WS0117.BR_H02 PT-P-FL-A-2 Populus tr... 27 6.5
gb|CK103994.1|CK103994 I009P26.5pR Populus senescing leaves... 23 7.2
gb|CV235445.1|CV235445 WS0122.B21_C17 PT-GT-FL-A-3 Populus ... 27 7.3
gb|DT495144.1|DT495144 WS0112.BR_I09 PT-P-FL-A-2 Populus tr... 27 7.3
gb|DT497938.1|DT497938 WS0113.BR_O14 PT-P-FL-A-2 Populus tr... 27 7.3
gb|CN520007.1|CN520007 GQ0107.B3_J16 GQ010 Populus trichoca... 27 7.6
gb|CV238476.1|CV238476 WS0126.B21_N03 PT-GT-FL-A-3 Populus ... 27 7.6
gb|DT471811.1|DT471811 WS0122.BR_C17 PT-GT-FL-A-3 Populus t... 27 7.8
gb|CV251547.1|CV251547 WS0117.B21_H02 PT-P-FL-A-2 Populus t... 27 7.8
gb|DT493817.1|DT493817 WS01116.BR_I20 PT-P-FL-A-2 Populus t... 27 7.8
gb|CN549881.1|CN549881 GQ0243.B3_L05 GQ024 Populus trichoca... 27 7.9
gb|CV248129.1|CV248129 WS0112.B21_I09 PT-P-FL-A-2 Populus t... 27 8.0
gb|CV280058.1|CV280058 WS0134.B21_J11 PTxD-IL-FL-A-4 Populu... 27 8.0
gb|CV276360.1|CV276360 WS0179.B21_I07 PTxD-NR-A-8 Populus t... 27 8.1
gb|CV240014.1|CV240014 WS0234.B21_C10 PT-MB-A-13 Populus tr... 27 8.2
gb|CV273598.1|CV273598 WS01711.B21_I18 PTxD-NR-A-8 Populus ... 27 8.2
gb|CK091705.1|CK091705 F119P70.3pR Populus flower cDNA libr... 29 8.9
gb|CV272764.1|CV272764 WS0158.B21_K01 PTxN-IB-A-6 Populus t... 29 8.9
gb|DT493075.1|DT493075 WS02553.C21_E24 PT-MB-N-A-15 Populus... 29 8.9
gb|DT513620.1|DT513620 WS02422.B21_I18 PTxD-ICC-N-A-14 Popu... 29 8.9
gb|CF235308.1|CF235308 PtaJXT0021C7C0705 Poplar cDNA librar... 29 8.9
>gb|CN523355.1|CN523355 GQ015M12.T3_C12 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M12_C12 5', mRNA sequence
Length = 817
Score = 84.0 bits (177), Expect(2) = 2e-033
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL QILPW++YH V+GV+ FFL VEG AA P + VLESI
Sbjct: 51 ICITTSTSAGLDQILPWMFYHKVMGVTTFFLFVEGNAASPNTSKVLESI 197
Score = 77.1 bits (162), Expect(2) = 2e-033
Identities = 34/61 (55%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RDA MD I TD I RE
Sbjct: 252 SRIWNETWLSSFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGARE 431
Query: 331 Y 333
Y
Sbjct: 432 Y 434
Score = 56.5 bits (117), Expect(2) = 4e-015
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = -1 / -1
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
+DS+T G AA PST RKK TP+TL** HGRI +PA+VL VI I
Sbjct: 196 MDSKTLDVLGDAAFPSTKRKKVVTPITL**NIHGRI*SKPAEVLVVIHI 50
Score = 42.8 bits (87), Expect(2) = 4e-015
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = -2 / -3
Query: 333 VLSXXXXXNXXISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIP 160
+ + N IS +HS IP H+N HFHV LL + VK T LIP
Sbjct: 434 IFTGTSRVNQFISVKMKYPVHSCIPCHDNCHFHVERLLHKQLIIAWFVKETGQPCLIP 261
Score = 40.0 bits (81), Expect = 0.006
Identities = 26/61 (42%), Positives = 28/61 (45%)
Frame = -3 / -1
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMR 153
YSR SSV SI ASL + ISM C SS* GL* VSF +R
Sbjct: 433 YSRAPAG*ISSSVSR*SIQSIPASLAMTIAISMLRDCFTNSS*LHGL*KKLDSHVSFHIR 254
Query: 152 L 150
L
Sbjct: 253 L 251
Score = 35.9 bits (72), Expect = 0.10
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = -1 / -2
Query: 325 GXXXXEXXHQYXXX*XNPF*HPXX**XXFPCLXXAXXXVRNXXACKXXLLXKSHS 161
G E HQ +PF HP * FPC A N CK SHS
Sbjct: 426 GHQQGESVHQCQDEVSSPFLHPLP*QLPFPC*EIASQTAHNCMVCKRNWTAMSHS 262
Score = 33.1 bits (66), Expect(2) = 0.001
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +2 / +1
Query: 158 FGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXGMLEWIXSXXXILMXXF 310
+GMR V FT+ I + S TWK L GM EW LM F
Sbjct: 259 YGMRHGCPVSFTNHAIMSCL*SNLSTWKWQLSWQGMQEWTGYFILTLMN*F 411
Score = 29.9 bits (59), Expect(2) = 0.093
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3 / +2
Query: 159 LE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*NG 275
+E*D+ + LQ L A +HGN + GC NG
Sbjct: 260 ME*DMAVQFLLQTMQL*AVCEAISQHGNGNCHGKGCRNG 376
Score = 27.6 bits (54), Expect(2) = 0.001
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2 / +2
Query: 2 DLYHGKHICWPTPDSSMVVLS 64
D+YH K+ W DS++ VLS
Sbjct: 50 DMYHNKYFSWFGSDSTVDVLS 112
Score = 24.4 bits (47), Expect(2) = 0.093
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 1 RSVSREAHLLAYTRFFHGCII 63
R VS++ L + RF+ GC I
Sbjct: 49 RYVSQQVLQLVWIRFYRGCFI 111
>gb|DT479421.1|DT479421 WS02525.BR_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_N02 5', mRNA sequence
Length = 910
Score = 80.3 bits (169), Expect(2) = 2e-032
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +3 / +2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSA L QILPW++YH V+GV FFL VEG+AA P ++VLESI
Sbjct: 449 ICITTSTSADLAQILPWMFYHKVMGVMTFFLFVEGKAASPKVSNVLESI 595
Score = 77.1 bits (162), Expect(2) = 2e-032
Identities = 34/61 (55%), Positives = 36/61 (59%)
Frame = +1 / +2
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RDA MD I TD I RE
Sbjct: 650 SRIWNETWLSNFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGARE 829
Query: 331 Y 333
Y
Sbjct: 830 Y 832
Score = 54.7 bits (113), Expect(2) = 2e-013
Identities = 29/49 (59%), Positives = 33/49 (67%)
Frame = -1 / -2
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T G AA PST RKK TP+TL** HGRI + A+VL VI I
Sbjct: 594 IDSKTLDTLGDAAFPSTKRKKVITPITL**NIHGRI*AKSAEVLVVIHI 448
Score = 38.6 bits (78), Expect(2) = 2e-013
Identities = 25/61 (40%), Positives = 28/61 (45%)
Frame = -3 / -2
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMR 153
YSR SSV S+ ASL + ISM C SS* GL* VSF +R
Sbjct: 831 YSRAPAG*ISSSVSR*SIQSMPASLAMTIAISMLRDCFTKSS*LHGL*KKLDSHVSFHIR 652
Query: 152 L 150
L
Sbjct: 651 L 649
Score = 37.7 bits (76), Expect = 0.029
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -2 / -1
Query: 333 VLSXXXXXNXXISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIP 160
+ + N IS IH+ IP H+N HFHV LL + VK LIP
Sbjct: 832 IFTGTSRVNQFISVKMKYPIHACIPCHDNCHFHVERLLHKKLIVAWFVKEIG*PCLIP 659
Score = 33.6 bits (67), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -1 / -3
Query: 325 GXXXXEXXHQYXXX*XNPF*HPXX**XXFPCLXXAXXXVRNXXACKXXLLXKSHS 161
G E HQ NP HP * FPC A + CK + SHS
Sbjct: 824 GHQQGESVHQCQDEVSNPCLHPLP*QLPFPC*ETASQKAHSCMVCKRNWIAMSHS 660
Score = 31.3 bits (62), Expect(2) = 0.056
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2 / +3
Query: 158 FGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXGMLEWIXSXXXILMXXF 310
+GMR + FT+ + S TWK L GM WI LM F
Sbjct: 657 YGMRHGYPISFTNHATMSFL*SSLSTWKWQLSWQGMQAWIGYFILTLMN*F 809
Score = 27.6 bits (54), Expect(2) = 2.0
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3 / +1
Query: 159 LE*DLXSRXXLQAXXLRTXXXAXXKHGNXXYYXXGC*NG 275
+E*D+ + LQ L A +HGN + GC +G
Sbjct: 658 ME*DMAIQFLLQTMQL*AFCEAVSQHGNGNCHGKGCRHG 774
Score = 24.0 bits (46), Expect(2) = 0.056
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1 / +3
Query: 1 RSVSREAHLLAYTRFFHGCII 63
R VS+ L RF+HGC I
Sbjct: 447 RYVSQRVLQLI*LRFYHGCFI 509
Score = 22.1 bits (42), Expect(2) = 2.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2 / +1
Query: 2 DLYHGKHICWPTPDSSMVVLS 64
D+YH ++ + DS+M VLS
Sbjct: 448 DMYHNEYFS*FSSDSTMDVLS 510
>gb|CV256577.1|CV256577 WS0244.B21_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_D22 3', mRNA sequence
Length = 705
Score = 80.3 bits (169), Expect(2) = 3e-021
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +3 / -3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSA L QILPW++YH V+GV FFL VEG+AA P ++VLESI
Sbjct: 358 ICITTSTSADLAQILPWMFYHKVMGVMTFFLFVEGKAASPKVSNVLESI 212
Score = 54.7 bits (113), Expect(2) = 2e-008
Identities = 29/49 (59%), Positives = 33/49 (67%)
Frame = -1 / +3
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
IDS+T G AA PST RKK TP+TL** HGRI + A+VL VI I
Sbjct: 213 IDSKTLDTLGDAAFPSTKRKKVITPITL**NIHGRI*AKSAEVLVVIHI 359
Score = 40.0 bits (81), Expect(2) = 3e-021
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1 / -3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXL 231
SRIWNET + FYKP YEL Q L
Sbjct: 157 SRIWNETWLSNFFYKPCNYELFVKQSL 77
Score = 22.1 bits (42), Expect(2) = 2e-008
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3 / +3
Query: 224 CXXXSS*XXGL*XXPAXQVSFQMRL 150
C SS* GL* VSF +RL
Sbjct: 84 CFTKSS*LHGL*KKLDSHVSFHIRL 158
>gb|BU820189.1|BU820189 UA52DPC06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 565
Score = 84.0 bits (177), Expect = 3e-016
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +3 / +2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
ICIT STSAGL QILPW++YH V+GV+ FFL VEG AA P + VLESI
Sbjct: 383 ICITTSTSAGLDQILPWMFYHKVMGVTTFFLFVEGNAASPNTSKVLESI 529
Score = 56.5 bits (117), Expect = 6e-008
Identities = 29/49 (59%), Positives = 34/49 (69%)
Frame = -1 / -2
Query: 148 IDSRTEVXAGFAASPSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
+DS+T G AA PST RKK TP+TL** HGRI +PA+VL VI I
Sbjct: 528 MDSKTLDVLGDAAFPSTKRKKVVTPITL**NIHGRI*SKPAEVLVVIHI 382
>gb|BU877658.1|BU877658 V037F03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 475
Score = 77.1 bits (162), Expect = 4e-014
Identities = 34/61 (55%), Positives = 36/61 (59%)
Frame = +1 / +3
Query: 151 SRIWNETXXAGXFYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXRE 330
SRIWNET + FYKP YEL Q LNMEM I+M RDA MD I TD I RE
Sbjct: 48 SRIWNETWLSNFFYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGARE 227
Query: 331 Y 333
Y
Sbjct: 228 Y 230
Score = 38.6 bits (78), Expect = 0.016
Identities = 25/61 (40%), Positives = 28/61 (45%)
Frame = -3 / -1
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL*XXPAXQVSFQMR 153
YSR SSV S+ ASL + ISM C SS* GL* VSF +R
Sbjct: 229 YSRAPAG*ISSSVSR*SIQSMPASLAMTIAISMLRDCFTKSS*LHGL*KKLDSHVSFHIR 50
Query: 152 L 150
L
Sbjct: 49 L 47
Score = 37.7 bits (76), Expect = 0.029
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = -2 / -3
Query: 333 VLSXXXXXNXXISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVKXTCXXSLIP 160
+ + N IS IH+ IP H+N HFHV LL + VK LIP
Sbjct: 230 IFTGTSRVNQFISVKMKYPIHACIPCHDNCHFHVERLLHKKLIVAWFVKEIG*PCLIP 57
Score = 33.6 bits (67), Expect = 0.51
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -1 / -2
Query: 325 GXXXXEXXHQYXXX*XNPF*HPXX**XXFPCLXXAXXXVRNXXACKXXLLXKSHS 161
G E HQ NP HP * FPC A + CK + SHS
Sbjct: 222 GHQQGESVHQCQDEVSNPCLHPLP*QLPFPC*ETASQKAHSCMVCKRNWIAMSHS 58
Score = 31.3 bits (62), Expect = 2.5
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2 / +1
Query: 158 FGMRLXXQVXFTSXXITNXXXSXX*TWKXXLLXXGMLEWIXSXXXILMXXF 310
+GMR + FT+ + S TWK L GM WI LM F
Sbjct: 55 YGMRHGYPISFTNHATMSFL*SSLSTWKWQLSWQGMQAWIGYFILTLMN*F 207
>gb|DN501916.1|DN501916 V037F03.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V037F03 5', mRNA sequence
Length = 663
Score = 60.2 bits (125), Expect(2) = 5e-010
Identities = 27/49 (55%), Positives = 28/49 (57%)
Frame = +1 / +1
Query: 187 FYKPXXYELXXXQXLNMEMXIIMXRDARMDXIXXXXTDXXIXXXXXREY 333
FYKP YEL Q LNMEM I+M RDA MD I TD I REY
Sbjct: 133 FYKPCNYELFVKQSLNMEMAIVMARDAGMDWILHLDTDELIHPAGAREY 279
Score = 36.3 bits (73), Expect = 0.076
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2 / -1
Query: 333 VLSXXXXXNXXISXXXXDXIHSSIPXHNNXHFHV*XLLXXXFVXXXLVK 187
+ + N IS IH+ IP H+N HFHV LL + VK
Sbjct: 279 IFTGTSRVNQFISVKMKYPIHACIPCHDNCHFHVERLLHKKLIVAWFVK 133
Score = 30.9 bits (61), Expect = 3.4
Identities = 20/48 (41%), Positives = 22/48 (45%)
Frame = -3 / -2
Query: 332 YSRXXXXXXXSSVXXXMXXSILASLXIIXXISMFXXCXXXSS*XXGL* 189
YSR SSV S+ ASL + ISM C SS* GL*
Sbjct: 278 YSRAPAG*ISSSVSR*SIQSMPASLAMTIAISMLRDCFTKSS*LHGL* 135
Score = 21.2 bits (40), Expect(2) = 5e-010
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1 / +3
Query: 151 SRIWNET 171
SRIWNET
Sbjct: 96 SRIWNET 116
>gb|CX181915.1|CX181915 C08_45-94_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 550
Score = 62.9 bits (131), Expect = 8e-010
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +3 / +1
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEG 107
ICIT STSA L QILPW++YH V+GV FFL VEG
Sbjct: 433 ICITTSTSADLVQILPWMFYHKVMGVMTFFLFVEG 537
Score = 43.7 bits (89), Expect = 5e-004
Identities = 22/35 (62%), Positives = 25/35 (71%)
Frame = -1 / -3
Query: 106 PSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
PST RKK TP+TL** HGRI + A+VL VI I
Sbjct: 536 PSTKRKKVITPITL**NIHGRI*TKSAEVLVVIHI 432
>gb|CK106051.1|CK106051 UA52DPC06.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA52DPC06 5', mRNA sequence
Length = 520
Score = 56.1 bits (116), Expect = 9e-008
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3 / +3
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXT 131
ICIT STSAG+ QILPW+ YH V+GV+ F ++G + T
Sbjct: 384 ICITTSTSAGIDQILPWMLYHKVMGVTTF*PYIDGRECSVSIT 512
Score = 32.2 bits (64), Expect = 1.3
Identities = 19/35 (54%), Positives = 21/35 (60%)
Frame = -1 / -1
Query: 106 PSTNRKKCETPMTL**YNHGRIWCRPADVLPVIQI 2
PS K TP+TL* HGRI PA+VL VI I
Sbjct: 487 PSIYG*KVVTPITL*YNIHGRI*SIPAEVLVVIHI 383
>gb|CN523101.1|CN523101 GQ0121.B3_P03 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0121_P03 5', mRNA sequence
Length = 197
Score = 48.3 bits (99), Expect = 2e-005
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3 / +3
Query: 45 LPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESI 149
LPW++YH V+GVS FFL E AA + VLE++
Sbjct: 6 LPWIFYHKVMGVSTFFLFXEXRAASHDVSKVLETV 110
Score = 33.1 bits (66), Expect = 0.70
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = -1 / -2
Query: 142 SRTEVXAGFAASPSTNRKKCETPMTL**YNHGRI 41
S+T + AA S RKK ETP+TL** HG++
Sbjct: 103 SKTLDTSWEAALXSXKRKKVETPITL**NIHGKV 2
>gb|CX657459.1|CX657459 PO02047B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047B05 5', mRNA sequence
Length = 602
Score = 34.5 bits (69), Expect = 0.27
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3 / +1
Query: 9 ITGSTSAGLHQILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLE 143
+ GS+SAG H +L Y ++ VSH++ +V+ P S++E
Sbjct: 358 VNGSSSAGFHVSQQYLRYSSLYIVSHYWWVVQV*LLMPLSASLIE 492
>gb|DN498818.1|DN498818 S075G04.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S075G04 5', mRNA sequence
Length = 745
Score = 33.1 bits (66), Expect = 0.70
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2 / +2
Query: 14 GKHICWPTPDSSMVVLSQCHWC 79
GKHICW ++ + CH C
Sbjct: 164 GKHICWRNVSQTLAITYMCHLC 229
>gb|CX170967.1|CX170967 E11_69-69_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 645
Score = 32.2 bits (64), Expect = 1.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3 / +2
Query: 39 QILPWLYYHNVIGVSHFFLLVEGEAAKPAXTSVLESIQPHLE 164
Q LPW+ +H V G H F + +SVLE P E
Sbjct: 227 QRLPWINFHEVSGSGHLFPFIPEICEAIIKSSVLEKN*PFFE 352
>gb|CA926808.1|CA926808 MTU6CR.P1.D07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 31.8 bits (63), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 460 QRIPWINYHELPGAGHLFLVI 522
>gb|CA926825.1|CA926825 MTU6CR.P1.F01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 652
Score = 31.8 bits (63), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +3
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 459 QRIPWINYHELPGAGHLFLVI 521
>gb|CA926845.1|CA926845 MTU6CR.P1.H05 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 653
Score = 31.8 bits (63), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +1
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 460 QRIPWINYHELPGAGHLFLVI 522
>gb|CK095810.1|CK095810 UA30CPD05.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA30CPD05 3', mRNA sequence
Length = 810
Score = 31.3 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -1
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 243 QGIPWINYHELPGAGHLFLVI 181
>gb|CV243984.1|CV243984 WS0253.B21_G12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_G12 3', mRNA sequence
Length = 810
Score = 31.3 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -2
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 269 QGIPWINYHELPGAGHLFLVI 207
>gb|CV257418.1|CV257418 WS0246.B21_J20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_J20 3', mRNA sequence
Length = 703
Score = 31.3 bits (62), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 3 ICITGSTSAGLHQILPWLYYHNVIGVSHFFLLV 101
I + S + Q LPW+ YH V G H F +
Sbjct: 321 IMVPFSLQRYIAQRLPWINYHEVPGAGHLFTAI 223
>gb|DT492202.1|DT492202 WS02549.C21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02549_O23 3', mRNA sequence
Length = 784
Score = 31.3 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 272 QGIPWINYHELPGAGHLFLVI 210
>gb|DT505172.1|DT505172 WS01810.C21_D12 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_D12 3', mRNA sequence
Length = 468
Score = 31.3 bits (62), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -2
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL++
Sbjct: 269 QGIPWINYHELPGAGHLFLVI 207
>gb|AJ780386.1|AJ780386 AJ780386 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900006G07F1, mRNA sequence
Length = 230
Score = 30.9 bits (61), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H F++V
Sbjct: 35 QGIPWINYHELPGAGHLFIVV 97
>gb|AJ780744.1|AJ780744 AJ780744 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900011H05F1, mRNA sequence
Length = 230
Score = 30.9 bits (61), Expect = 3.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3 / -2
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H F++V
Sbjct: 196 QGIPWINYHELPGAGHLFIVV 134
>gb|CV241894.1|CV241894 WS02513.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_I21 3', mRNA sequence
Length = 736
Score = 30.9 bits (61), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL +
Sbjct: 284 QRIPWINYHELPGAGHLFLAI 222
>gb|DT482731.1|DT482731 WS02520.B21_K03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_K03 3', mRNA sequence
Length = 818
Score = 30.9 bits (61), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / -1
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL +
Sbjct: 332 QRIPWINYHELPGAGHLFLAI 270
>gb|CV274626.1|CV274626 WS0173.B21_O07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_O07 3', mRNA sequence
Length = 871
Score = 30.4 bits (60), Expect = 4.7
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3 / -1
Query: 39 QILPWLYYHNVIGVSHFFLLV 101
Q +PW+ YH + G H FL +
Sbjct: 268 QGIPWINYHELPGAGHLFLAI 206
>gb|DT499145.1|DT499145 WS0117.BR_H02 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0117_H02
5', mRNA sequence
Length = 523
Score = 27.2 bits (53), Expect(2) = 6.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 190 LAVHSINRISHCLLVVEGNKSKAARSS 110
Score = 18.9 bits (35), Expect(2) = 6.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -3
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 473 SPSSYHHQIRPW 438
>gb|CK103994.1|CK103994 I009P26.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I009P26 5', mRNA sequence
Length = 118
Score = 22.6 bits (43), Expect(2) = 7.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1 / +3
Query: 121 GFAASPSTNRKKCETPMTL**YNHGRI 41
GF STNR K + P TL HG +
Sbjct: 36 GFVEECSTNR*KHKDPKTLEGQ*HGTL 116
Score = 20.8 bits (39), Expect(2) = 7.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Frame = -3 / +2
Query: 155 RLNRFKNRGXSWLCSLSFN 99
++NR + +W C FN
Sbjct: 2 KINRMSHSRYAWFCRGMFN 58
>gb|CV235445.1|CV235445 WS0122.B21_C17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_C17 3', mRNA sequence
Length = 595
Score = 27.2 bits (53), Expect(2) = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 478 LAVHSINRISHCLLVVEGNKSKAARSS 558
Score = 18.9 bits (35), Expect(2) = 7.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 195 SPSSYHHQIRPW 230
>gb|DT495144.1|DT495144 WS0112.BR_I09 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_I09
5', mRNA sequence
Length = 596
Score = 27.2 bits (53), Expect(2) = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 271 LAVHSINRISHCLLVVEGNKSKAARSS 191
Score = 18.9 bits (35), Expect(2) = 7.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 554 SPSSYHHQIRPW 519
>gb|DT497938.1|DT497938 WS0113.BR_O14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0113_O14
5', mRNA sequence
Length = 597
Score = 27.2 bits (53), Expect(2) = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 272 LAVHSINRISHCLLVVEGNKSKAARSS 192
Score = 18.9 bits (35), Expect(2) = 7.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 555 SPSSYHHQIRPW 520
>gb|CN520007.1|CN520007 GQ0107.B3_J16 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_J16 5', mRNA sequence
Length = 619
Score = 27.2 bits (53), Expect(2) = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -3
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 242 LAVHSINRISHCLLVVEGNKSKAARSS 162
Score = 18.9 bits (35), Expect(2) = 7.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -2
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 525 SPSSYHHQIRPW 490
>gb|CV238476.1|CV238476 WS0126.B21_N03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_N03 3', mRNA sequence
Length = 620
Score = 27.2 bits (53), Expect(2) = 7.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +3
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 492 LAVHSINRISHCLLVVEGNKSKAARSS 572
Score = 18.9 bits (35), Expect(2) = 7.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +2
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 209 SPSSYHHQIRPW 244
>gb|DT471811.1|DT471811 WS0122.BR_C17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_C17 5', mRNA sequence
Length = 634
Score = 27.2 bits (53), Expect(2) = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 273 LAVHSINRISHCLLVVEGNKSKAARSS 193
Score = 18.9 bits (35), Expect(2) = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 556 SPSSYHHQIRPW 521
>gb|CV251547.1|CV251547 WS0117.B21_H02 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_H02 3', mRNA sequence
Length = 638
Score = 27.2 bits (53), Expect(2) = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 520 LAVHSINRISHCLLVVEGNKSKAARSS 600
Score = 18.9 bits (35), Expect(2) = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 237 SPSSYHHQIRPW 272
>gb|DT493817.1|DT493817 WS01116.BR_I20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_I20 5', mRNA sequence
Length = 637
Score = 27.2 bits (53), Expect(2) = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -3
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 275 LAVHSINRISHCLLVVEGNKSKAARSS 195
Score = 18.9 bits (35), Expect(2) = 7.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -2
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 558 SPSSYHHQIRPW 523
>gb|CN549881.1|CN549881 GQ0243.B3_L05 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_L05 5', mRNA sequence
Length = 647
Score = 27.2 bits (53), Expect(2) = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -2
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 247 LAVHSINRISHCLLVVEGNKSKAARSS 167
Score = 18.9 bits (35), Expect(2) = 7.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 530 SPSSYHHQIRPW 495
>gb|CV248129.1|CV248129 WS0112.B21_I09 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0112_I09 3', mRNA sequence
Length = 656
Score = 27.2 bits (53), Expect(2) = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 538 LAVHSINRISHCLLVVEGNKSKAARSS 618
Score = 18.9 bits (35), Expect(2) = 8.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +3
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 255 SPSSYHHQIRPW 290
>gb|CV280058.1|CV280058 WS0134.B21_J11 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_J11 3', mRNA sequence
Length = 657
Score = 27.2 bits (53), Expect(2) = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +2
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 479 LAVHSINRISHCLLVVEGNKSKAARSS 559
Score = 18.9 bits (35), Expect(2) = 8.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 196 SPSSYHHQIRPW 231
>gb|CV276360.1|CV276360 WS0179.B21_I07 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0179_I07 3', mRNA sequence
Length = 665
Score = 27.2 bits (53), Expect(2) = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 179 LAVHSINRISHCLLVVEGNKSKAARSS 99
Score = 18.9 bits (35), Expect(2) = 8.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -3
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 462 SPSSYHHQIRPW 427
>gb|CV240014.1|CV240014 WS0234.B21_C10 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_C10
3', mRNA sequence
Length = 668
Score = 27.2 bits (53), Expect(2) = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / +1
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 487 LAVHSINRISHCLLVVEGNKSKAARSS 567
Score = 18.9 bits (35), Expect(2) = 8.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / +1
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 205 SPSSYHHQIRPW 240
>gb|CV273598.1|CV273598 WS01711.B21_I18 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01711_I18 3', mRNA sequence
Length = 668
Score = 27.2 bits (53), Expect(2) = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3 / -3
Query: 54 LYYHNVIGVSHFFLLVEGEAAKPAXTS 134
L H++ +SH L+VEG +K A +S
Sbjct: 252 LAVHSINRISHCLLVVEGNKSKAARSS 172
Score = 18.9 bits (35), Expect(2) = 8.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3 / -2
Query: 18 STSAGLHQILPW 53
S S+ HQI PW
Sbjct: 535 SPSSYHHQIRPW 500
>gb|CK091705.1|CK091705 F119P70.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F119P70 3', mRNA sequence
Length = 854
Score = 29.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFF 92
Q LPW+ YH + G H F
Sbjct: 267 QRLPWINYHEISGSGHMF 214
>gb|CV272764.1|CV272764 WS0158.B21_K01 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_K01 3', mRNA sequence
Length = 919
Score = 29.5 bits (58), Expect = 8.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2 / +3
Query: 17 KHICWPTPDSSMVVLSQCHWCFTF 88
+H+ W TP S + S WC+ F
Sbjct: 375 RHLAWQTPSSETTLFSADLWCW*F 446
>gb|DT493075.1|DT493075 WS02553.C21_E24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_E24 3', mRNA sequence
Length = 811
Score = 29.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3 / -1
Query: 39 QILPWLYYHNVIGVSHFF 92
Q LPW+ YH + G H F
Sbjct: 253 QRLPWINYHEISGSGHMF 200
>gb|DT513620.1|DT513620 WS02422.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_I18 3', mRNA sequence
Length = 883
Score = 29.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3 / -3
Query: 39 QILPWLYYHNVIGVSHFF 92
Q LPW+ YH + G H F
Sbjct: 266 QRLPWINYHEISGSGHMF 213
>gb|CF235308.1|CF235308 PtaJXT0021C7C0705 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 389
Score = 29.5 bits (58), Expect = 8.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3 / +3
Query: 39 QILPWLYYHNVIGVSHFF 92
Q LPW+ YH + G H F
Sbjct: 147 QRLPWINYHEISGSGHMF 200
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 112,937,478
Number of Sequences: 369679
Number of extensions: 1023697
Number of successful extensions: 62740
Number of sequences better than 10.0: 52
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3329137339
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)