TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK107012.1|CK107012 UB43DPD07.5pR Populus active cambium... 84 1e-019
gb|AI166505.1|AI166505 xylem.est.330 Poplar xylem Lambda ZA... 78 2e-014
gb|CA930835.1|CA930835 MTU2TA.P10.H09 Aspen apex cDNA Libra... 61 2e-009
gb|DT475543.1|DT475543 WS0127.BR_H02 PT-GT-FL-A-3 Populus t... 32 1.1
gb|BU862238.1|BU862238 S013B06 Populus imbibed seed cDNA li... 24 1.4
gb|CV233465.1|CV233465 WS01211.B21_B04 PT-GT-FL-A-3 Populus... 32 1.5
gb|CV234078.1|CV234078 WS01213.B21_I12 PT-GT-FL-A-3 Populus... 32 1.5
gb|CV236700.1|CV236700 WS01225.B21.1_B08 PT-GT-FL-A-3 Popul... 32 1.5
gb|CV238260.1|CV238260 WS0125.B21_O19 PT-GT-FL-A-3 Populus ... 32 1.5
gb|CV238870.1|CV238870 WS0128.B21.1_G15 PT-GT-FL-A-3 Populu... 32 1.5
gb|DT476397.1|DT476397 WS01229.B21_H10 PT-GT-FL-A-3 Populus... 32 1.5
gb|DT476681.1|DT476681 WS01230.B21_G20 PT-GT-FL-A-3 Populus... 32 1.5
gb|DT477079.1|DT477079 WS01231.B21_O08 PT-GT-FL-A-3 Populus... 32 1.5
gb|BU876188.1|BU876188 V017D07 Populus flower cDNA library ... 29 1.9
gb|BU877159.1|BU877159 V030bF11 Populus flower cDNA library... 29 2.4
gb|BI124075.1|BI124075 I035P47P Populus leaf cDNA library P... 26 2.6
gb|CX183312.1|CX183312 G12_45-55_14.ab1 leaf inoculated wit... 31 2.8
gb|DT491198.1|DT491198 WS02547.C21_B05 PT-MB-N-A-15 Populus... 31 2.8
gb|DT505168.1|DT505168 WS01810.C21_D08 PTxD-IL-N-A-9 Populu... 31 2.8
gb|DT505169.1|DT505169 WS01810.C21_D09 PTxD-IL-N-A-9 Populu... 31 2.8
gb|DT505623.1|DT505623 WS01811.C21_G19 PTxD-IL-N-A-9 Populu... 31 2.8
gb|DT506062.1|DT506062 WS01812.C21_J12 PTxD-IL-N-A-9 Populu... 31 2.8
gb|CK114064.1|CK114064 V030F11 Populus male catkins cDNA li... 29 3.1
gb|CK090364.1|CK090364 C092P39.3pR Populus strain T89 leave... 24 4.0
gb|BI126068.1|BI126068 I070P05P Populus leaf cDNA library P... 30 5.3
gb|CA931166.1|CA931166 MTU2TA.P3.C01 Aspen apex cDNA Librar... 30 5.3
gb|AJ770068.1|AJ770068 AJ770068 Populus euphratica leaf 3-6... 30 5.3
gb|BP928834.1|BP928834 BP928834 full-length enriched poplar... 30 5.3
gb|CX182082.1|CX182082 C02_45-52_06.ab1 leaf inoculated wit... 21 5.3
gb|BI127716.1|BI127716 G064P74Y Populus cambium cDNA librar... 27 5.6
gb|BU890230.1|BU890230 P033F11 Populus petioles cDNA librar... 27 5.7
gb|BU893097.1|BU893097 P073C08 Populus petioles cDNA librar... 27 5.8
gb|BU891107.1|BU891107 P046A11 Populus petioles cDNA librar... 27 5.9
gb|CN521993.1|CN521993 GQ0123.B3_K13 GQ012 Populus trichoca... 27 6.0
gb|DT498772.1|DT498772 WS0116.BR_F01 PT-P-FL-A-2 Populus tr... 27 6.2
gb|CA928305.1|CA928305 MTU6TR.P1.A09 Aspen root cDNA Librar... 27 6.8
gb|BU868258.1|BU868258 M113C03 Populus flower cDNA library ... 27 7.0
gb|BU825294.1|BU825294 UK107TA10 Populus apical shoot cDNA ... 27 7.2
gb|CK102795.1|CK102795 G091P85.5pR Populus tension wood cDN... 29 7.3
gb|CX654966.1|CX654966 PO01003C06 Poplar SC cDNA library Po... 29 7.3
gb|CX656695.1|CX656695 PO02022E03 Poplar SC cDNA library Po... 29 7.3
gb|CX659221.1|CX659221 PO01028A03 Poplar SC cDNA library Po... 29 7.3
gb|BU870983.1|BU870983 Q025E11 Populus flower cDNA library ... 27 7.6
gb|BU831985.1|BU831985 T028B01 Populus apical shoot cDNA li... 27 7.8
gb|CV247818.1|CV247818 WS01119.B21_H02 PT-P-FL-A-2 Populus ... 26 7.8
gb|DN496456.1|DN496456 P069D05.5pR Populus petioles cDNA li... 24 7.9
gb|CX659828.1|CX659828 PO01014F05 Poplar SC cDNA library Po... 27 8.0
gb|DT494900.1|DT494900 WS01119.BR_M06 PT-P-FL-A-2 Populus t... 27 8.2
gb|DT477571.1|DT477571 WS02520.BR_F12 PT-MB-N-A-15 Populus ... 24 8.5
gb|CF227734.1|CF227734 PtaXM0003H7H0715 Poplar cDNA library... 24 8.7
gb|DT494786.1|DT494786 WS01119.BR_H02 PT-P-FL-A-2 Populus t... 26 8.7
gb|DT498340.1|DT498340 WS0115.BR_B04 PT-P-FL-A-2 Populus tr... 26 9.2
gb|CX178033.1|CX178033 A02_45-30_02.ab1 leaf inoculated wit... 26 9.2
gb|CX181861.1|CX181861 F02_45-1_12.ab1 leaf inoculated with... 26 9.2
gb|CK094258.1|CK094258 I019P64.3pR Populus senescing leaves... 25 9.3
gb|CX187160.1|CX187160 A10_45-4_02.ab1 leaf inoculated with... 26 9.5
gb|CX182968.1|CX182968 C12_45-79_06.ab1 leaf inoculated wit... 26 9.8
>gb|CK107012.1|CK107012 UB43DPD07.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB43DPD07 5', mRNA sequence
Length = 527
Score = 84.5 bits (178), Expect(2) = 1e-019
Identities = 36/70 (51%), Positives = 49/70 (70%)
Frame = +3 / +1
Query: 105 MVLKYSSVEITPNKGSILSKIISVTVRTIQKDAEEKKASFNPRPYFRLXINWLYDLTTTD 284
+V+ VE +K +L KI+SVT++ +QKD+EE+K SFN RPYFRL INWL DL + +
Sbjct: 247 LVVSILKVEQGSSKLFLLPKILSVTMKLVQKDSEERKNSFNARPYFRLFINWLQDLLSPE 426
Query: 285 GHHDGSNFQV 314
DG NFQ+
Sbjct: 427 PVIDGVNFQI 456
Score = 47.3 bits (97), Expect = 3e-005
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = -2 / -3
Query: 314 NLKIRTIMMAISSSKVIEPIYXQSEVWSGIK*SFLFLSIFLNGPHSNRNNLGKYTAFIWC 135
+L++ TI + +V++P+Y QSE+WS IK F L I L HS+ NL + F
Sbjct: 456 DLEVYTINNRLWGKEVLKPVYKQSEIWSCIKRIFPLL*ILLYEFHSDTQNLWQKKKFT*S 277
Query: 134 YLH 126
LH
Sbjct: 276 LLH 268
Score = 34.1 bits (68), Expect = 0.31
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2 / +3
Query: 161 QDYFCYCEDHSERC*GKESFI*SPTILPIVYKLAL*P 271
+D+ C+ E ++ G+E F * TI IVYKLA P
Sbjct: 303 KDFECHYETRTKGFRGEEKFF*CKTIFQIVYKLASRP 413
Score = 32.7 bits (65), Expect = 0.79
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = -3 / -1
Query: 259 QFIXNRKYGRGLNEAFFSSASF*MVLTVT 173
QFI N KYG L E F SS SF VT
Sbjct: 401 QFINNLKYGLALKEFFLSSESFCTSFIVT 315
Score = 29.0 bits (57), Expect(2) = 1e-019
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3 / +1
Query: 63 ISYFSIDSYAKLVVMVLK 116
+S+ +ID YAKLVV +LK
Sbjct: 214 LSFLAIDIYAKLVVSILK 267
>gb|AI166505.1|AI166505 xylem.est.330 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 296
Score = 77.6 bits (163), Expect = 2e-014
Identities = 32/51 (62%), Positives = 39/51 (76%)
Frame = +3 / +3
Query: 162 KIISVTVRTIQKDAEEKKASFNPRPYFRLXINWLYDLTTTDGHHDGSNFQV 314
KI+S+TVR IQKD+EEKK SFN RPYFRL I+WL DL + + D NFQ+
Sbjct: 3 KILSITVRFIQKDSEEKKNSFNARPYFRLFISWLQDLLSPEPVVDSVNFQI 155
Score = 46.9 bits (96), Expect = 4e-005
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -2 / -1
Query: 314 NLKIRTIMMAISSSKVIEPIYXQSEVWSGIK*SFLFLSIFLNGPHSNRNNL 162
+LK+ TI + ++++P Y QSE+WS IK FL L I L HS+ +L
Sbjct: 155 DLKVYTIDNRLWGKEILKPTYKQSEIWSCIKRIFLLLRILLYESHSDGQDL 3
Score = 38.2 bits (77), Expect = 0.018
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -3 / -2
Query: 259 QFIXNRKYGRGLNEAFFSSASF*MVLTVTEII 164
Q I N KYG L E FFSS SF M LTV + I
Sbjct: 100 QLINNLKYGLALKEFFFSSESFCMNLTVMDKI 5
Score = 35.0 bits (70), Expect = 0.16
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2 / +2
Query: 161 QDYFCYCEDHSERC*GKESFI*SPTILPIVYKLA 262
+D +CE H++ G+E F * TI IVYKLA
Sbjct: 2 KDLVHHCEIHTKGFGGEEKFF*CKTIFQIVYKLA 103
Score = 31.3 bits (62), Expect = 2.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1 / +1
Query: 196 KMLRKRKLHLIPDHTSDCX*IG 261
++ R+RK+ L+ DH SDC *+G
Sbjct: 37 RIRRRRKILLMQDHISDCL*VG 102
>gb|CA930835.1|CA930835 MTU2TA.P10.H09 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 350
Score = 61.1 bits (127), Expect = 2e-009
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +3 / +1
Query: 195 KDAEEKKASFNPRPYFRLXINWLYDLTTTDGHHDGSNFQV 314
KD+EE+K SFN RPYFRL I+WL DL + + DG NFQ+
Sbjct: 1 KDSEERKNSFNARPYFRLFISWLQDLLSPEPVIDGVNFQI 120
Score = 34.5 bits (69), Expect = 0.22
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2 / -3
Query: 314 NLKIRTIMMAISSSKVIEPIYXQSEVWSGIK*SFLFL 204
+L++ TI + +V++P Y QSE+WS IK F L
Sbjct: 120 DLEVYTINNRLWGKQVLKPAYKQSEIWSCIKRIFPLL 10
>gb|DT475543.1|DT475543 WS0127.BR_H02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_H02 5', mRNA sequence
Length = 614
Score = 32.2 bits (64), Expect = 1.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1 / +2
Query: 34 HLSNHHSNPIFHIFPL 81
H HH+NP+F+IFPL
Sbjct: 47 HA*KHHTNPLFYIFPL 94
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +1 / +2
Query: 46 HHSNPIFHIFPL 81
HH+NP+F+IFPL
Sbjct: 149 HHTNPLFYIFPL 184
>gb|BU862238.1|BU862238 S013B06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 522
Score = 24.0 bits (46), Expect(2) = 1.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +2 / +3
Query: 152 YTFQDYFCYCEDHSERC*GKESF 220
YT +YFCY + ++ + SF
Sbjct: 321 YTMYEYFCYIREAGKQGVSRVSF 389
Score = 24.0 bits (46), Expect(2) = 1.4
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1 / +2
Query: 76 PLIHMQSSWLW 108
P IH++ WLW
Sbjct: 5 PAIHVKGQWLW 37
>gb|CV233465.1|CV233465 WS01211.B21_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_B04 3', mRNA sequence
Length = 676
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 332 LTKSACIWWVFAAINTSLPIFL 397
>gb|CV234078.1|CV234078 WS01213.B21_I12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_I12 3', mRNA sequence
Length = 664
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +3
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 462 LTKSACIWWVFAAINTSLPIFL 527
>gb|CV236700.1|CV236700 WS01225.B21.1_B08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_B08 3', mRNA sequence
Length = 893
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 463 LTKSACIWWVFAAINTSLPIFL 528
>gb|CV238260.1|CV238260 WS0125.B21_O19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_O19 3', mRNA sequence
Length = 574
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 392 LTKSACIWWVFAAINTSLPIFL 457
>gb|CV238870.1|CV238870 WS0128.B21.1_G15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_G15 3', mRNA sequence
Length = 546
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 461 LTKSACIWWVFAAINTSLPIFL 526
>gb|DT476397.1|DT476397 WS01229.B21_H10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_H10 3', mRNA sequence
Length = 771
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +3
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 423 LTKSACIWWVFAAINTSLPIFL 488
>gb|DT476681.1|DT476681 WS01230.B21_G20 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01230_G20 3', mRNA sequence
Length = 898
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 422 LTKSACIWWVFAAINTSLPIFL 487
>gb|DT477079.1|DT477079 WS01231.B21_O08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_O08 3', mRNA sequence
Length = 954
Score = 31.8 bits (63), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2 / +1
Query: 5 LRANCCSWWIISAITTATPYFI 70
L + C WW+ +AI T+ P F+
Sbjct: 463 LTKSACIWWVFAAINTSLPIFL 528
>gb|BU876188.1|BU876188 V017D07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 390
Score = 28.6 bits (56), Expect(2) = 1.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3 / -1
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
+K EE+ NP+ R + WL LT D H
Sbjct: 102 RKSEEEESEEENPKMLHRYRLVWLLGLTERDYH 4
Score = 18.5 bits (34), Expect(2) = 1.9
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 220 NSHHQNPV 197
>gb|BU877159.1|BU877159 V030bF11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 515
Score = 29.0 bits (57), Expect(2) = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1 / -2
Query: 34 HLSNHHSNPIFHIFPLIHMQSSW 102
+L +HH++P+ I P + Q SW
Sbjct: 397 YLLSHHNHPLLLIHPQLPQQKSW 329
Score = 18.0 bits (33), Expect(2) = 2.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Frame = +3 / -3
Query: 213 KASFNPRPYFRLXI 254
K +NP PY + +
Sbjct: 162 KIFYNPPPYMKARV 121
>gb|BI124075.1|BI124075 I035P47P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 227
Score = 26.3 bits (51), Expect(2) = 2.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1 / -1
Query: 37 LSNHHSNPIFHIFPLIHMQSSWLWFSST 120
L+ +HS P + PLI + SS F++T
Sbjct: 170 LTLYHSIPFLQLIPLIFLNSSRSSFANT 87
Score = 19.4 bits (36), Expect(2) = 2.6
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / -2
Query: 147 GSILSKIIS 173
GSILS+IIS
Sbjct: 49 GSILSRIIS 23
>gb|CX183312.1|CX183312 G12_45-55_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 462
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / +1
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 241 LISHLTKNHGNPSFHSISFLH 303
>gb|DT491198.1|DT491198 WS02547.C21_B05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02547_B05 3', mRNA sequence
Length = 561
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / -1
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 549 LISHLTKNHGNPSFHSISFLH 487
>gb|DT505168.1|DT505168 WS01810.C21_D08 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_D08 3', mRNA sequence
Length = 787
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / +2
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 635 LISHLTKNHGNPSFHSISFLH 697
>gb|DT505169.1|DT505169 WS01810.C21_D09 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_D09 3', mRNA sequence
Length = 896
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / +3
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 630 LISHLTKNHGNPSFHSISFLH 692
>gb|DT505623.1|DT505623 WS01811.C21_G19 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_G19 3', mRNA sequence
Length = 592
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / -3
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 548 LISHLTKNHGNPSFHSISFLH 486
>gb|DT506062.1|DT506062 WS01812.C21_J12 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01812_J12 3', mRNA sequence
Length = 601
Score = 30.9 bits (61), Expect = 2.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1 / -3
Query: 25 LVDHLSNHHSNPIFHIFPLIH 87
L+ HL+ +H NP FH +H
Sbjct: 599 LISHLTKNHGNPSFHSISFLH 537
>gb|CK114064.1|CK114064 V030F11 Populus male catkins cDNA library Populus trichocarpa cDNA
clone V030F11 5', mRNA sequence
Length = 660
Score = 29.0 bits (57), Expect(2) = 3.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1 / -3
Query: 34 HLSNHHSNPIFHIFPLIHMQSSW 102
+L +HH++P+ I P + Q SW
Sbjct: 418 YLLSHHNHPLLLIHPQLPQQKSW 350
Score = 18.0 bits (33), Expect(2) = 3.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Frame = +3 / -1
Query: 213 KASFNPRPYFRLXI 254
K +NP PY + +
Sbjct: 183 KIFYNPPPYMKARV 142
>gb|CK090364.1|CK090364 C092P39.3pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C092P39 3', mRNA sequence
Length = 629
Score = 24.0 bits (46), Expect(2) = 4.0
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1 / -1
Query: 76 PLIHMQSSWLW 108
P IH++ WLW
Sbjct: 509 PAIHVKGQWLW 477
Score = 22.6 bits (43), Expect(2) = 4.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = +2 / -2
Query: 152 YTFQDYFCYCED 187
YT +YFCY +
Sbjct: 193 YTMYEYFCYIRE 158
>gb|BI126068.1|BI126068 I070P05P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 384
Score = 29.9 bits (59), Expect = 5.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2 / +1
Query: 296 IMMAISSSKVIEPIYXQSEVWSGIK*SFLFLSIFLNGPHS 177
I++ S V E + + ++W G FL LSI L P+S
Sbjct: 7 ILLRKKKSSVFESVEQEGDIWLG*NSRFLALSIHLPMPNS 126
>gb|CA931166.1|CA931166 MTU2TA.P3.C01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 389
Score = 29.9 bits (59), Expect = 5.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -1
Query: 8 RANCCSWWI 34
R NCCSWWI
Sbjct: 239 RGNCCSWWI 213
>gb|AJ770068.1|AJ770068 AJ770068 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100006F10F1, mRNA sequence
Length = 551
Score = 29.9 bits (59), Expect = 5.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / -2
Query: 8 RANCCSWWI 34
R NCCSWWI
Sbjct: 241 RGNCCSWWI 215
>gb|BP928834.1|BP928834 BP928834 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-089_G11.f 5', mRNA sequence
Length = 684
Score = 29.9 bits (59), Expect = 5.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1 / +1
Query: 61 IFHIFPLIHMQSSWLWFSSTLQ 126
+F I PLIH S +LWF ++
Sbjct: 115 VFRIGPLIHFLSGFLWFFQVIE 180
>gb|CX182082.1|CX182082 C02_45-52_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 626
Score = 20.8 bits (39), Expect(3) = 5.3
Identities = 4/5 (80%), Positives = 4/5 (80%)
Frame = +2 / +2
Query: 17 CCSWW 31
CC WW
Sbjct: 131 CCCWW 145
Score = 19.9 bits (37), Expect(3) = 5.3
Identities = 6/25 (24%), Positives = 11/25 (44%)
Frame = +1 / +1
Query: 79 LIHMQSSWLWFSSTLQWR*HQIKAV 153
L + SSW W+ + + I +
Sbjct: 214 LFRIMSSWSWYGKRFMFLHYSITPI 288
Score = 19.9 bits (37), Expect(3) = 5.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1 / +1
Query: 16 LLLLVDHLSNHHSNPIFHIFPLI 84
+LLLV L +NPI + L+
Sbjct: 130 VLLLVASLKKSRTNPISLVMELM 198
>gb|BI127716.1|BI127716 G064P74Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 478
Score = 27.2 bits (53), Expect(2) = 5.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -1
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 118 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 20
Score = 18.5 bits (34), Expect(2) = 5.6
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 236 NSHHQNPV 213
>gb|BU890230.1|BU890230 P033F11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 488
Score = 27.2 bits (53), Expect(2) = 5.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 241 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 143
Score = 18.5 bits (34), Expect(2) = 5.7
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 359 NSHHQNPV 336
>gb|BU893097.1|BU893097 P073C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 497
Score = 27.2 bits (53), Expect(2) = 5.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 241 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 143
Score = 18.5 bits (34), Expect(2) = 5.8
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 359 NSHHQNPV 336
>gb|BU891107.1|BU891107 P046A11 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 508
Score = 27.2 bits (53), Expect(2) = 5.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -3
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 101 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 3
Score = 18.5 bits (34), Expect(2) = 5.9
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -2
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 219 NSHHQNPV 196
>gb|CN521993.1|CN521993 GQ0123.B3_K13 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0123_K13 5', mRNA sequence
Length = 521
Score = 27.2 bits (53), Expect(2) = 6.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -1
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 233 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 135
Score = 18.5 bits (34), Expect(2) = 6.0
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 351 NSHHQNPV 328
>gb|DT498772.1|DT498772 WS0116.BR_F01 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_F01
5', mRNA sequence
Length = 543
Score = 27.2 bits (53), Expect(2) = 6.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -1
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 195 RRSEEEESEEENPKMLHRYLLVWLLGLTERDYH 97
Score = 18.5 bits (34), Expect(2) = 6.2
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 313 NSHHQNPV 290
>gb|CA928305.1|CA928305 MTU6TR.P1.A09 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 589
Score = 27.2 bits (53), Expect(2) = 6.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / +3
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 384 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 482
Score = 18.5 bits (34), Expect(2) = 6.8
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / +2
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 266 NSHHQNPV 289
>gb|BU868258.1|BU868258 M113C03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 27.2 bits (53), Expect(2) = 7.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 213 RRSEEEESEEENPKMLHRYLLVWLLGLTERDYH 115
Score = 18.5 bits (34), Expect(2) = 7.0
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 331 NSHHQNPV 308
>gb|BU825294.1|BU825294 UK107TA10 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 634
Score = 27.2 bits (53), Expect(2) = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -1
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 238 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 140
Score = 18.5 bits (34), Expect(2) = 7.2
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -3
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 356 NSHHQNPV 333
>gb|CK102795.1|CK102795 G091P85.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G091P85 5', mRNA sequence
Length = 521
Score = 29.5 bits (58), Expect = 7.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 258 WLYDLTTTDGHHDGSNFQV 314
W+Y+L+ G+HDGS+ ++
Sbjct: 468 WIYNLSRFTGNHDGSSVEI 412
>gb|CX654966.1|CX654966 PO01003C06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003C06 5', mRNA sequence
Length = 665
Score = 29.5 bits (58), Expect = 7.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3 / -2
Query: 258 WLYDLTTTDGHHDGSNFQV 314
W+Y+L+ G+HDGS+ ++
Sbjct: 589 WIYNLSRFTGNHDGSSVEI 533
>gb|CX656695.1|CX656695 PO02022E03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02022E03 5', mRNA sequence
Length = 650
Score = 29.5 bits (58), Expect = 7.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 258 WLYDLTTTDGHHDGSNFQV 314
W+Y+L+ G+HDGS+ ++
Sbjct: 249 WIYNLSRFTGNHDGSSVEI 193
>gb|CX659221.1|CX659221 PO01028A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028A03 5', mRNA sequence
Length = 505
Score = 29.5 bits (58), Expect = 7.3
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3 / -3
Query: 258 WLYDLTTTDGHHDGSNFQV 314
W+Y+L+ G+HDGS+ ++
Sbjct: 446 WIYNLSRFTGNHDGSSVEI 390
>gb|BU870983.1|BU870983 Q025E11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 667
Score = 27.2 bits (53), Expect(2) = 7.6
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -3
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 260 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 162
Score = 18.5 bits (34), Expect(2) = 7.6
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -2
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 378 NSHHQNPV 355
>gb|BU831985.1|BU831985 T028B01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 687
Score = 27.2 bits (53), Expect(2) = 7.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 212 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 114
Score = 18.5 bits (34), Expect(2) = 7.8
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 330 NSHHQNPV 307
>gb|CV247818.1|CV247818 WS01119.B21_H02 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_H02 3', mRNA sequence
Length = 502
Score = 26.3 bits (51), Expect(2) = 7.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / -1
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 490 LRSGCCWWWMARANKYASVNF 428
Score = 18.9 bits (35), Expect(2) = 7.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / -2
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 288 IFHPHQPVHMAGCW 247
>gb|DN496456.1|DN496456 P069D05.5pR Populus petioles cDNA library Populus tremula cDNA
clone P069D05 5', mRNA sequence
Length = 373
Score = 24.0 bits (46), Expect(2) = 7.9
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1 / +2
Query: 7 PSKLLLLVDH 36
PSKLLLL DH
Sbjct: 245 PSKLLLLADH 274
Score = 20.8 bits (39), Expect(2) = 7.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = +1 / +2
Query: 49 HSNPIFHIFPLIHMQSSWLWF 111
H N F + P + + +LWF
Sbjct: 278 HENCFFFLCP*SLLNARYLWF 340
>gb|CX659828.1|CX659828 PO01014F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01014F05 5', mRNA sequence
Length = 705
Score = 27.2 bits (53), Expect(2) = 8.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 101 RRSEEEESEEENPKMLHRYRLVWLLGLTERDYH 3
Score = 18.5 bits (34), Expect(2) = 8.0
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 219 NSHHQNPV 196
>gb|DT494900.1|DT494900 WS01119.BR_M06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_M06 5', mRNA sequence
Length = 722
Score = 27.2 bits (53), Expect(2) = 8.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3 / -2
Query: 192 QKDAEEKKASFNPRPYFRLXINWLYDLTTTDGH 290
++ EE+ NP+ R + WL LT D H
Sbjct: 127 RRSEEEESEEENPKMLHRYLLVWLLGLTERDYH 29
Score = 18.5 bits (34), Expect(2) = 8.2
Identities = 4/8 (50%), Positives = 7/8 (87%)
Frame = +1 / -1
Query: 40 SNHHSNPI 63
++HH NP+
Sbjct: 245 NSHHQNPV 222
>gb|DT477571.1|DT477571 WS02520.BR_F12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_F12 5', mRNA sequence
Length = 756
Score = 23.5 bits (45), Expect(2) = 8.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1 / +1
Query: 58 PIFHIFPLIHMQSS 99
P F +FP IH Q+S
Sbjct: 295 PFFFLFPWIHPQTS 336
Score = 22.1 bits (42), Expect(2) = 8.5
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1 / +1
Query: 103 LWFSSTLQW 129
+WF S+LQW
Sbjct: 547 VWFCSSLQW 573
>gb|CF227734.1|CF227734 PtaXM0003H7H0715 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 234
Score = 23.5 bits (45), Expect(2) = 8.7
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3 / -3
Query: 123 SVEITPNKGSILSKI 167
S +++PNKGS + K+
Sbjct: 70 SCQVSPNKGSCMPKV 26
Score = 20.3 bits (38), Expect(2) = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1 / -2
Query: 28 VDHLSNHHSNPIFHIFPLIHMQSSWLW 108
VDH+ + P+F IF I + S + +
Sbjct: 164 VDHIR*KATFPVF*IFLFIFIYSPFFY 84
>gb|DT494786.1|DT494786 WS01119.BR_H02 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01119_H02 5', mRNA sequence
Length = 563
Score = 26.3 bits (51), Expect(2) = 8.7
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 74 LRSGCCWWWMARANKYASVNF 136
Score = 18.9 bits (35), Expect(2) = 8.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +3
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 276 IFHPHQPVHMAGCW 317
>gb|DT498340.1|DT498340 WS0115.BR_B04 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_B04
5', mRNA sequence
Length = 595
Score = 26.3 bits (51), Expect(2) = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 80 LRSGCCWWWMARANKYASVNF 142
Score = 18.9 bits (35), Expect(2) = 9.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +3
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 282 IFHPHQPVHMAGCW 323
>gb|CX178033.1|CX178033 A02_45-30_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 598
Score = 26.3 bits (51), Expect(2) = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 85 LRSGCCWWWMARANKYASVNF 147
Score = 18.9 bits (35), Expect(2) = 9.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +2
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 287 IFHPHQPVHMAGCW 328
>gb|CX181861.1|CX181861 F02_45-1_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 600
Score = 26.3 bits (51), Expect(2) = 9.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +1
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 85 LRSGCCWWWMARANKYASVNF 147
Score = 18.9 bits (35), Expect(2) = 9.2
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +2
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 287 IFHPHQPVHMAGCW 328
>gb|CK094258.1|CK094258 I019P64.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I019P64 3', mRNA sequence
Length = 444
Score = 25.4 bits (49), Expect(2) = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1 / +1
Query: 46 HHSNPIFHIFPLIHMQSSWLWFSST 120
+HS P + PLI + SS F++T
Sbjct: 217 YHSIPFLQLIPLIFLNSSRSSFANT 291
Score = 19.4 bits (36), Expect(2) = 9.3
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +3 / +2
Query: 147 GSILSKIIS 173
GSILS+IIS
Sbjct: 329 GSILSRIIS 355
>gb|CX187160.1|CX187160 A10_45-4_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 617
Score = 26.3 bits (51), Expect(2) = 9.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 125 LRSGCCWWWMARANKYASVNF 187
Score = 18.9 bits (35), Expect(2) = 9.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +3
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 327 IFHPHQPVHMAGCW 368
>gb|CX182968.1|CX182968 C12_45-79_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 637
Score = 26.3 bits (51), Expect(2) = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2 / +2
Query: 5 LRANCCSWWIISAITTATPYF 67
LR+ CC WW+ A A+ F
Sbjct: 104 LRSGCCWWWMARANKYASVNF 166
Score = 18.9 bits (35), Expect(2) = 9.8
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +1 / +3
Query: 61 IFHIFPLIHMQSSW 102
IFH +HM W
Sbjct: 306 IFHPHQPVHMAGCW 347
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 136,342,599
Number of Sequences: 369679
Number of extensions: 1547432
Number of successful extensions: 120008
Number of sequences better than 10.0: 64
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 2732873935
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)