TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV227702.1|CV227702 WS0167.B21_P11 PT-DX-A-7 Populus tri... 103 3e-037
gb|CF235271.1|CF235271 PtaJXT0020G7G0713 Poplar cDNA librar... 103 3e-037
gb|CF233396.1|CF233396 PtaJXO0022G4G0414 Poplar cDNA librar... 101 1e-036
gb|CV228179.1|CV228179 WS0191.B21_F05 PT-DX-N-A-10 Populus ... 101 1e-035
gb|CV228763.1|CV228763 WS01911.B21_C15 PT-DX-N-A-10 Populus... 103 7e-033
gb|BI131202.1|BI131202 G116P95Y Populus cambium cDNA librar... 84 5e-032
gb|CF235645.1|CF235645 PtaJXT0025C6C0606 Poplar cDNA librar... 82 3e-031
gb|BU884116.1|BU884116 R006B01 Populus root cDNA library Po... 130 3e-030
emb|Y18219.1|PTR18219 Populus trichocarpa GLac90 gene 101 4e-030
emb|Y13772.1|PTY13772 Populus trichocarpa mRNA for laccase,... 101 4e-030
gb|CV269060.1|CV269060 WS0207.B21_D13 PTxN-IB-N-A-11 Populu... 105 4e-030
gb|CK106638.1|CK106638 UB27CPE12.5pR Populus active cambium... 82 1e-027
gb|CV231087.1|CV231087 WS0193.B21_I04 PT-DX-N-A-10 Populus ... 103 9e-027
gb|CK318602.1|CK318602 X9P01b04 Populus stem seasonal libra... 76 1e-026
gb|CK318594.1|CK318594 X9P01a06 Populus stem seasonal libra... 76 2e-026
emb|Y13770.1|PTY13770 Populus trichocarpa mRNA for laccase,... 77 4e-026
gb|DT472855.1|DT472855 WS01227.BR_J01 PT-GT-FL-A-3 Populus ... 77 4e-026
emb|Y18218.1|PTR18218 Populus trichocarpa GLac3 gene 74 6e-026
emb|Y13771.1|PTY13771 Populus trichocarpa mRNA for laccase,... 74 6e-026
gb|DN499521.1|DN499521 T066A07.5pR Populus shoot meristem c... 80 5e-025
gb|BU834813.1|BU834813 T066A07 Populus apical shoot cDNA li... 80 5e-025
emb|Y18217.1|PTR18217 Populus trichocarpa GLac1 gene 80 3e-024
emb|Y13769.1|PTY13769 Populus trichocarpa mRNA for laccase,... 80 3e-024
gb|CV229532.1|CV229532 WS01913.B21_J16 PT-DX-N-A-10 Populus... 82 3e-024
gb|AI166958.1|AI166958 xylem.est.739 Poplar xylem Lambda ZA... 79 3e-024
gb|CV230947.1|CV230947 WS0193.B21_B09 PT-DX-N-A-10 Populus ... 81 4e-024
gb|BI129223.1|BI129223 G087P57Y Populus cambium cDNA librar... 76 2e-023
gb|CK102689.1|CK102689 G087P57.5pR Populus tension wood cDN... 76 2e-023
gb|CN517457.1|CN517457 GQ0092.B3_O03 GQ009 Populus trichoca... 76 5e-023
gb|BI129441.1|BI129441 G090P71Y Populus cambium cDNA librar... 78 3e-022
gb|BU883577.1|BU883577 UM93TD10 Populus flower cDNA library... 103 6e-022
gb|CV231593.1|CV231593 WS0194.B21_P24 PT-DX-N-A-10 Populus ... 101 1e-021
gb|CV231696.1|CV231696 WS0195.B21_E23 PT-DX-N-A-10 Populus ... 101 1e-021
gb|CF230443.1|CF230443 Ptac0008D7D0707 Poplar cDNA library ... 76 2e-021
gb|CK092000.1|CK092000 G061P53.3pR Populus tension wood cDN... 101 2e-021
gb|BI130254.1|BI130254 G102P90Y Populus cambium cDNA librar... 62 4e-021
gb|CF235172.1|CF235172 PtaJXT0019F7F0711 Poplar cDNA librar... 75 7e-021
gb|CV237346.1|CV237346 WS01227.B21.1_J01 PT-GT-FL-A-3 Popul... 77 9e-021
gb|DN487816.1|DN487816 R006B01.3pR Populus root cDNA librar... 99 1e-020
>gb|CV227702.1|CV227702 WS0167.B21_P11 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_P11
3', mRNA sequence
Length = 924
Score = 103 bits (220), Expect(2) = 3e-037
Identities = 37/60 (61%), Positives = 49/60 (81%)
Frame = -1 / -3
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+ PV GT+LYR++YG+ VQIV QDT I +E HP+H+HGY FY++A GFGNY+P
Sbjct: 634 NVSRSLFTPVPGTKLYRLKYGSRVQIVLQDTSIVTSENHPIHLHGYDFYIIAQGFGNYNP 455
Score = 70.3 bits (147), Expect(2) = 3e-037
Identities = 31/53 (58%), Positives = 33/53 (62%)
Frame = -1 / -3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF LP SLLQAH+ I GVFT DFPA PP FD+T
Sbjct: 796 CQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDYT 638
>gb|CF235271.1|CF235271 PtaJXT0020G7G0713 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 755
Score = 103 bits (220), Expect(2) = 3e-037
Identities = 37/60 (61%), Positives = 49/60 (81%)
Frame = -1 / +3
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+ PV GT+LYR++YG+ VQIV QDT I +E HP+H+HGY FY++A GFGNY+P
Sbjct: 249 NVSRSLFTPVPGTKLYRLKYGSRVQIVLQDTSIVTSENHPIHLHGYDFYIIAQGFGNYNP 428
Score = 70.3 bits (147), Expect(2) = 3e-037
Identities = 31/53 (58%), Positives = 33/53 (62%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF LP SLLQAH+ I GVFT DFPA PP FD+T
Sbjct: 87 CQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDYT 245
>gb|CF233396.1|CF233396 PtaJXO0022G4G0414 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 101 bits (216), Expect(2) = 1e-036
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -1 / +2
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+ PV GT+LYR++YG+ VQIV QDT I +E HP+H+HGY FY++A GFGNY P
Sbjct: 476 NVSRSLFTPVPGTKLYRLKYGSRVQIVLQDTSIVTSENHPIHLHGYDFYIIAQGFGNYIP 655
Score = 70.3 bits (147), Expect(2) = 1e-036
Identities = 31/53 (58%), Positives = 33/53 (62%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF LP SLLQAH+ I GVFT DFPA PP FD+T
Sbjct: 314 CQGPNGTRFTASMNNVSFVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDYT 472
>gb|CV228179.1|CV228179 WS0191.B21_F05 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_F05 3', mRNA sequence
Length = 899
Score = 101 bits (215), Expect(2) = 1e-035
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = -1 / -1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQ+V QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 722 NVSRSLFQPARGTKLYKLKYGSRVQVVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 543
Score = 67.0 bits (140), Expect(2) = 1e-035
Identities = 30/53 (56%), Positives = 32/53 (60%)
Frame = -1 / -1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF P SLLQA+ IPGVFT DFPA P V FD+T
Sbjct: 884 CQGPNGTRFTASMNNVSFVFPSKASLLQAYKQKIPGVFTTDFPAKPQVKFDYT 726
>gb|CV228763.1|CV228763 WS01911.B21_C15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_C15 3', mRNA sequence
Length = 758
Score = 103 bits (219), Expect(2) = 7e-033
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -1 / -1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QPV GT+LY ++YG+ VQIV QDT I E HP+H+HGY FY++A GFGNY+P
Sbjct: 647 NVSRSLFQPVAGTKLYNLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAQGFGNYNP 468
Score = 56.1 bits (116), Expect(2) = 7e-033
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = -1 / -1
Query: 295 FQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
F LP SLLQAH+ I GVFT DFPA PP FD+T
Sbjct: 758 FVLPSNFSLLQAHHQRIQGVFTTDFPANPPRKFDYT 651
>gb|BI131202.1|BI131202 G116P95Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 446
Score = 84.0 bits (177), Expect(2) = 5e-032
Identities = 28/51 (54%), Positives = 41/51 (80%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVL 29
NV R+L+QP +GT+LY+++YG+ VQ+V QDT I E HP+H+HGY FY++
Sbjct: 292 NVSRSLFQPARGTKLYKLKYGSRVQVVLQDTSIVTPENHPIHLHGYDFYII 444
Score = 71.2 bits (149), Expect(2) = 5e-032
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF P SLLQA+ +IPGVFT DFPA PPV FD+T
Sbjct: 130 CQGPNGTRCTASMNNVSFVFPSKASLLQAYKQNIPGVFTTDFPAKPPVKFDYT 288
>gb|CF235645.1|CF235645 PtaJXT0025C6C0606 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 82.2 bits (173), Expect(2) = 3e-031
Identities = 29/52 (55%), Positives = 40/52 (76%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLA 26
NV R+L+QP +GT+LY+++YG+ VQIV QDT I HP+H HGY FY++A
Sbjct: 574 NVSRSLFQPARGTKLYKLKYGSRVQIVLQDTSIVTPXNHPIHXHGYDFYIIA 729
Score = 71.6 bits (150), Expect(2) = 3e-031
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG ASM VSF P SLLQA+ +IPGVFT DFPA PPV FD+T
Sbjct: 412 CQGPNGTRFTASMNNVSFVFPSKASLLQAYKQNIPGVFTTDFPAKPPVKFDYT 570
>gb|BU884116.1|BU884116 R006B01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 710
Score = 130 bits (279), Expect = 3e-030
Identities = 50/112 (44%), Positives = 72/112 (64%)
Frame = -1 / +1
Query: 340 GXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQNVPRALW 161
G AS+ +SFQ P ++ +L+A+Y+ I GV+ D FP PP+FF+FT+ +P
Sbjct: 250 GVTQSRLAASVNNISFQTPTSMDILRAYYNQINGVYNDHFPDKPPLFFNFTADFIPSIYE 429
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
P KGT++ + Y + V+IVFQ T + A +HPMHIHG FYV+ GFGN+D
Sbjct: 430 TPSKGTKVKVLEYNSTVEIVFQGTNVAAGTDHPMHIHGTSFYVVGWGFGNFD 585
>emb|Y18219.1|PTR18219 Populus trichocarpa GLac90 gene
Length = 2767
Score = 101 bits (216), Expect(2) = 4e-030
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQIV QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 2086 NVSRSLFQPARGTKLYKLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 2265
Score = 48.3 bits (99), Expect(2) = 4e-030
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -1 / +1
Query: 274 SLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
SLLQA+ IPGVFT DFPA P V FD+T
Sbjct: 1996 SLLQAYKQKIPGVFTTDFPAKPQVKFDYT 2082
>emb|Y13772.1|PTY13772 Populus trichocarpa mRNA for laccase, lac90 gene
Length = 2080
Score = 101 bits (216), Expect(2) = 4e-030
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = -1 / +2
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQIV QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 1358 NVSRSLFQPARGTKLYKLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 1537
Score = 48.3 bits (99), Expect(2) = 4e-030
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -1 / +2
Query: 274 SLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
SLLQA+ IPGVFT DFPA P V FD+T
Sbjct: 1268 SLLQAYKQKIPGVFTTDFPAKPQVKFDYT 1354
>gb|CV269060.1|CV269060 WS0207.B21_D13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_D13 3', mRNA sequence
Length = 765
Score = 105 bits (225), Expect(2) = 4e-030
Identities = 37/60 (61%), Positives = 50/60 (83%)
Frame = -1 / -1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R LWQPVK T+LY++++GA VQIVFQDT I E+HPMH+HG++F V+ +GFGN++P
Sbjct: 678 NVSRGLWQPVKATKLYKLKFGAKVQIVFQDTSIVTVEDHPMHLHGHNFAVVGSGFGNFNP 499
Score = 44.1 bits (90), Expect(2) = 4e-030
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = -1 / -1
Query: 271 LLQAHYHHIPGVFTDDFPALPPVFFDFT 188
L+QA+Y GVFT DFP +PPV FD+T
Sbjct: 765 LMQAYYQGQLGVFTTDFPPVPPVKFDYT 682
>gb|CK106638.1|CK106638 UB27CPE12.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB27CPE12 5', mRNA sequence
Length = 674
Score = 82.2 bits (173), Expect(4) = 1e-027
Identities = 30/53 (56%), Positives = 40/53 (75%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLAT 23
NV R+L+QPV GT+L ++YG+ VQIV QDT I E HP+H+HGY FY++ T
Sbjct: 466 NVSRSLFQPVAGTKLCNLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIICT 624
Score = 49.6 bits (102), Expect(4) = 1e-027
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = -1 / +1
Query: 274 SLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
SLLQAH+ I GVFT DFPA PP FD+T
Sbjct: 376 SLLQAHHQRIQGVFTTDFPANPPRKFDYT 462
Score = 24.0 bits (46), Expect(4) = 1e-027
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLP 284
CQG ASM VSF LP
Sbjct: 303 CQGPNGTRFTASMNNVSFVLP 365
Score = 18.0 bits (33), Expect(4) = 1e-027
Identities = 5/6 (83%), Positives = 6/6 (100%)
Frame = -1 / +2
Query: 19 FGNYDP 2
FGNY+P
Sbjct: 629 FGNYNP 646
>gb|CV231087.1|CV231087 WS0193.B21_I04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_I04 3', mRNA sequence
Length = 685
Score = 103 bits (219), Expect(2) = 9e-027
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -1 / -2
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QPV GT+LY ++YG+ VQIV QDT I E HP+H+HGY FY++A GFGNY+P
Sbjct: 621 NVSRSLFQPVAGTKLYNLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAQGFGNYNP 442
Score = 35.4 bits (71), Expect(2) = 9e-027
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1 / -2
Query: 247 IPGVFTDDFPALPPVFFDFT 188
I GVFT DFPA PP FD+T
Sbjct: 684 IQGVFTTDFPANPPRKFDYT 625
>gb|CK318602.1|CK318602 X9P01b04 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 672
Score = 76.2 bits (160), Expect(2) = 1e-026
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = -1 / +3
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
Q GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ G GN+DP
Sbjct: 168 QTTNGTRAYRLAFNSTVQVVLQGTTIIAPESHPFHLHGFNFFVVGKGLGNFDP 326
Score = 61.6 bits (128), Expect(2) = 1e-026
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY++I GVFTDDFPA PP+ F++T N
Sbjct: 51 TTALLQAHYYNISGVFTDDFPAKPPISFNYTGNN 152
>gb|CK318594.1|CK318594 X9P01a06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 737
Score = 76.2 bits (160), Expect(2) = 2e-026
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = -1 / +3
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
Q GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ G GN+DP
Sbjct: 168 QTTNGTRAYRLAFNSTVQVVLQGTTIIAPESHPFHLHGFNFFVVGKGLGNFDP 326
Score = 61.6 bits (128), Expect(2) = 2e-026
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY++I GVFTDDFPA PP+ F++T N
Sbjct: 51 TTALLQAHYYNISGVFTDDFPAKPPISFNYTGNN 152
>emb|Y13770.1|PTY13770 Populus trichocarpa mRNA for laccase, lac2 gene, partial
Length = 1676
Score = 76.7 bits (161), Expect(2) = 4e-026
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = -1 / +1
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
Q + GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ GFGN+D
Sbjct: 919 QTINGTRTYRLAFNSTVQLVLQGTTIIAPESHPFHLHGFNFFVVGKGFGNFD 1074
Score = 59.7 bits (124), Expect(2) = 4e-026
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY+ I GVFTDDFPA+PP F++T N
Sbjct: 802 TTALLQAHYYSISGVFTDDFPAMPPNSFNYTGNN 903
>gb|DT472855.1|DT472855 WS01227.BR_J01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J01 5', mRNA sequence
Length = 902
Score = 76.7 bits (161), Expect(2) = 4e-026
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = -1 / +3
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
Q + GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ GFGN+D
Sbjct: 660 QTINGTRTYRLAFNSTVQLVLQGTTIIAPESHPFHLHGFNFFVVGKGFGNFD 815
Score = 59.7 bits (124), Expect(2) = 4e-026
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY+ I GVFTDDFPA+PP F++T N
Sbjct: 543 TTALLQAHYYSISGVFTDDFPAMPPNSFNYTGNN 644
>emb|Y18218.1|PTR18218 Populus trichocarpa GLac3 gene
Length = 3423
Score = 74.4 bits (156), Expect(2) = 6e-026
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -1 / +2
Query: 148 GTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ G GN+DP
Sbjct: 2411 GTRAYRLAFNSAVQVVLQGTTIIAPESHPFHLHGFNFFVVGKGIGNFDP 2557
Score = 61.6 bits (128), Expect(2) = 6e-026
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY++I GVFTDDFPA PP+ F++T N
Sbjct: 2282 TTALLQAHYYNISGVFTDDFPAKPPISFNYTGNN 2383
>emb|Y13771.1|PTY13771 Populus trichocarpa mRNA for laccase, lac3 gene
Length = 1946
Score = 74.4 bits (156), Expect(2) = 6e-026
Identities = 25/49 (51%), Positives = 35/49 (71%)
Frame = -1 / +3
Query: 148 GTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ G GN+DP
Sbjct: 1314 GTRAYRLAFNSAVQVVLQGTTIIAPESHPFHLHGFNFFVVGKGIGNFDP 1460
Score = 61.6 bits (128), Expect(2) = 6e-026
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY++I GVFTDDFPA PP+ F++T N
Sbjct: 1185 TTALLQAHYYNISGVFTDDFPAKPPISFNYTGNN 1286
>gb|DN499521.1|DN499521 T066A07.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T066A07 5', mRNA sequence
Length = 742
Score = 80.3 bits (169), Expect(2) = 5e-025
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = -1 / +2
Query: 190 TSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGN 11
T+Q + +Q V GT+LYR+ Y + VQ+V QDTG+ E HP+H+HG++F+ + G GN
Sbjct: 254 TTQAHNQKNFQTVSGTKLYRLAYNSTVQLVLQDTGMLTPENHPVHLHGFNFFEVGRGIGN 433
Query: 10 YDP 2
++P
Sbjct: 434 FNP 442
Score = 52.4 bits (108), Expect(2) = 5e-025
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T++LLQAH+ +I GVFTDDFP PP F++T
Sbjct: 169 TIALLQAHFFNIKGVFTDDFPGNPPTPFNYT 261
>gb|BU834813.1|BU834813 T066A07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 80.3 bits (169), Expect(2) = 5e-025
Identities = 28/63 (44%), Positives = 44/63 (69%)
Frame = -1 / +2
Query: 190 TSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGN 11
T+Q + +Q V GT+LYR+ Y + VQ+V QDTG+ E HP+H+HG++F+ + G GN
Sbjct: 242 TTQAHNQKNFQTVSGTKLYRLAYNSTVQLVLQDTGMLTPENHPVHLHGFNFFEVGRGIGN 421
Query: 10 YDP 2
++P
Sbjct: 422 FNP 430
Score = 52.4 bits (108), Expect(2) = 5e-025
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T++LLQAH+ +I GVFTDDFP PP F++T
Sbjct: 157 TIALLQAHFFNIKGVFTDDFPGNPPTPFNYT 249
>emb|Y18217.1|PTR18217 Populus trichocarpa GLac1 gene
Length = 1620
Score = 80.3 bits (169), Expect(2) = 3e-024
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = -1 / +2
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT+ YR+ Y + VQ+V QDTGI + E HP+H+HG++F+ + G G
Sbjct: 860 FNYTGTPPTNLQTTSGTKAYRLPYNSTVQLVMQDTGIISPENHPIHLHGFNFFAVGRGVG 1039
Query: 13 NYDP 2
NY+P
Sbjct: 1040 NYNP 1051
Score = 50.1 bits (103), Expect(2) = 3e-024
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 779 TTALLQAHFFNISGVFTTDFPAKPPHVFNYT 871
>emb|Y13769.1|PTY13769 Populus trichocarpa mRNA for laccase, lac1 gene, partial
Length = 1589
Score = 80.3 bits (169), Expect(2) = 3e-024
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = -1 / +2
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT+ YR+ Y + VQ+V QDTGI + E HP+H+HG++F+ + G G
Sbjct: 788 FNYTGTPPTNLQTTSGTKAYRLPYNSTVQLVMQDTGIISPENHPIHLHGFNFFAVGRGVG 967
Query: 13 NYDP 2
NY+P
Sbjct: 968 NYNP 979
Score = 50.1 bits (103), Expect(2) = 3e-024
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +2
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 707 TTALLQAHFFNISGVFTTDFPAKPPHVFNYT 799
>gb|CV229532.1|CV229532 WS01913.B21_J16 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_J16 3', mRNA sequence
Length = 812
Score = 81.7 bits (172), Expect(2) = 3e-024
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = -1 / +3
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+RY + V++V QDTGI + E HP+H+HG++F+ + G G
Sbjct: 276 FNYTGTPPTNLQTTSGTKVYRLRYNSTVELVMQDTGIISPENHPIHLHGFNFFGVGRGVG 455
Query: 13 NYDP 2
NY+P
Sbjct: 456 NYNP 467
Score = 48.7 bits (100), Expect(2) = 3e-024
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFP+ PP F++T
Sbjct: 195 TTALLQAHFFNISGVFTTDFPSKPPHVFNYT 287
>gb|AI166958.1|AI166958 xylem.est.739 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 334
Score = 78.5 bits (165), Expect(2) = 3e-024
Identities = 27/64 (42%), Positives = 41/64 (64%)
Frame = -1 / +1
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+ Y + VQ+V Q+TGI + E HP+H+HG++F+ + G G
Sbjct: 118 FNYTGTPPTNLQTKSGTKVYRLSYNSTVQLVMQNTGIISPENHPIHLHGFNFFAVGRGVG 297
Query: 13 NYDP 2
NY+P
Sbjct: 298 NYNP 309
Score = 50.1 bits (103), Expect(2) = 3e-024
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 37 TTALLQAHFFNISGVFTTDFPAKPPHVFNYT 129
>gb|CV230947.1|CV230947 WS0193.B21_B09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_B09 3', mRNA sequence
Length = 895
Score = 80.8 bits (170), Expect(2) = 4e-024
Identities = 28/64 (43%), Positives = 41/64 (64%)
Frame = -1 / +1
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+ Y + VQ+V QDTGI + E HP+H+HG++F+ + G G
Sbjct: 163 FNYTGTPPTNLQTKSGTKVYRLSYNSTVQLVMQDTGIISPENHPIHLHGFNFFAVGRGVG 342
Query: 13 NYDP 2
NY+P
Sbjct: 343 NYNP 354
Score = 49.2 bits (101), Expect(2) = 4e-024
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 82 TTALLQAHFLNISGVFTTDFPAKPPHVFNYT 174
>gb|BI129223.1|BI129223 G087P57Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 503
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = -1 / +1
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+ Y + V++V QDT I + E HP+H+HG++F+ + G G
Sbjct: 205 FNYTGTPPTNLQTRSGTKVYRLAYNSTVELVMQDTAIISPENHPIHLHGFNFFAVGRGVG 384
Query: 13 NYDP 2
NY+P
Sbjct: 385 NYNP 396
Score = 50.1 bits (103), Expect(2) = 2e-023
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 124 TTALLQAHFFNISGVFTTDFPAKPPHVFNYT 216
>gb|CK102689.1|CK102689 G087P57.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P57 5', mRNA sequence
Length = 530
Score = 76.2 bits (160), Expect(2) = 2e-023
Identities = 26/64 (40%), Positives = 40/64 (62%)
Frame = -1 / +3
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+ Y + V++V QDT I + E HP+H+HG++F+ + G G
Sbjct: 207 FNYTGTPPTNLQTRSGTKVYRLAYNSTVELVMQDTAIISPENHPIHLHGFNFFAVGRGVG 386
Query: 13 NYDP 2
NY+P
Sbjct: 387 NYNP 398
Score = 50.1 bits (103), Expect(2) = 2e-023
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +3
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 126 TTALLQAHFFNISGVFTTDFPAKPPHVFNYT 218
>gb|CN517457.1|CN517457 GQ0092.B3_O03 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_O03 5', mRNA sequence
Length = 552
Score = 76.2 bits (160), Expect(2) = 5e-023
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = -1 / +1
Query: 193 FTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFG 14
F P Q GT++YR+ Y + VQ+V QDTGI + E HP+H+HG+ F+ + G G
Sbjct: 295 FNYTGTPPTNLQTKSGTKVYRLSYNSTVQLVMQDTGIISPEXHPIHLHGFXFFAVGRGVG 474
Query: 13 NYDP 2
Y+P
Sbjct: 475 XYNP 486
Score = 49.2 bits (101), Expect(2) = 5e-023
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
T +LLQAH+ +I GVFT DFPA PP F++T
Sbjct: 214 TTALLQAHFLNISGVFTTDFPAKPPHVFNYT 306
>gb|BI129441.1|BI129441 G090P71Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 535
Score = 78.0 bits (164), Expect(2) = 3e-022
Identities = 28/66 (42%), Positives = 42/66 (63%)
Frame = -1 / +3
Query: 199 FDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATG 20
F F P + KGT++ + + A V++V QDT I AE HP+H+HG++F+V+ G
Sbjct: 255 FKFNYTGTPPSNIMTAKGTKVAVLPFNASVELVMQDTSIIGAESHPLHLHGFNFFVVGQG 434
Query: 19 FGNYDP 2
FGN+DP
Sbjct: 435 FGNFDP 452
Score = 44.6 bits (91), Expect(2) = 3e-022
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG AS+ VSF P+ L + GV+T DFP PP F++T
Sbjct: 114 CQGPNNTTLAASVNNVSFVQPNIALLQSHFLNRSKGVYTTDFPTNPPFKFNYT 272
>gb|BU883577.1|BU883577 UM93TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 599
Score = 103 bits (219), Expect = 6e-022
Identities = 37/60 (61%), Positives = 48/60 (80%)
Frame = -1 / +1
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QPV GT+LY ++YG+ VQIV QDT I E HP+H+HGY FY++A GFGNY+P
Sbjct: 13 NVSRSLFQPVAGTKLYNLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAQGFGNYNP 192
>gb|CV231593.1|CV231593 WS0194.B21_P24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_P24 3', mRNA sequence
Length = 730
Score = 101 bits (216), Expect = 1e-021
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = -1 / -3
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQIV QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 728 NVSRSLFQPARGTKLYKLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 549
>gb|CV231696.1|CV231696 WS0195.B21_E23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_E23 3', mRNA sequence
Length = 673
Score = 101 bits (216), Expect = 1e-021
Identities = 35/60 (58%), Positives = 49/60 (81%)
Frame = -1 / -3
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQIV QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 644 NVSRSLFQPARGTKLYKLKYGSRVQIVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 465
>gb|CF230443.1|CF230443 Ptac0008D7D0707 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 649
Score = 76.2 bits (160), Expect(2) = 2e-021
Identities = 27/66 (40%), Positives = 41/66 (62%)
Frame = -1 / +2
Query: 199 FDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATG 20
F F P + KGT++ + + V++V QDT I AE HP+H+HG++F+V+ G
Sbjct: 242 FKFNYTGTPPSNIMTAKGTKVAVLPFNTSVELVMQDTSIIGAESHPLHLHGFNFFVVGQG 421
Query: 19 FGNYDP 2
FGN+DP
Sbjct: 422 FGNFDP 439
Score = 44.1 bits (90), Expect(2) = 2e-021
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1 / +2
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG AS+ VSF P+ L + GV+T DFP PP F++T
Sbjct: 101 CQGPNNTMLAASVNNVSFVQPNIALLQSHFLNQSKGVYTTDFPTNPPFKFNYT 259
>gb|CK092000.1|CK092000 G061P53.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G061P53 3', mRNA sequence
Length = 641
Score = 101 bits (215), Expect = 2e-021
Identities = 34/60 (56%), Positives = 49/60 (81%)
Frame = -1 / -2
Query: 181 NVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYDP 2
NV R+L+QP +GT+LY+++YG+ VQ+V QDT I E HP+H+HGY FY++A GFGN++P
Sbjct: 622 NVSRSLFQPARGTKLYKLKYGSRVQVVLQDTSIVTPENHPIHLHGYDFYIIAEGFGNFNP 443
>gb|BI130254.1|BI130254 G102P90Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 467
Score = 61.6 bits (128), Expect(2) = 4e-021
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = -1 / +1
Query: 280 TVSLLQAHYHHIPGVFTDDFPALPPVFFDFTSQN 179
T +LLQAHY++I GVFTDDFPA PP+ F++T N
Sbjct: 220 TTALLQAHYYNISGVFTDDFPAKPPISFNYTGNN 321
Score = 57.0 bits (118), Expect(2) = 4e-021
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = -1 / +1
Query: 148 GTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYV 32
GT+ YR+ + + VQ+V Q T + A E HP H+HG++F+V
Sbjct: 349 GTKAYRLAFNSAVQVVLQGTTVIAPESHPFHLHGFNFFV 465
>gb|CF235172.1|CF235172 PtaJXT0019F7F0711 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 74.8 bits (157), Expect(2) = 7e-021
Identities = 27/65 (41%), Positives = 41/65 (63%)
Frame = -1 / +3
Query: 199 FDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATG 20
F F P + KGT++ + + A V++V QDT I AE HP+H+HG++F+V+ G
Sbjct: 366 FKFNYTGTPPSNIMTAKGTKVAVLPFNASVELVMQDTSIIGAESHPLHLHGFNFFVVGQG 545
Query: 19 FGNYD 5
FGN+D
Sbjct: 546 FGNFD 560
Score = 44.1 bits (90), Expect(2) = 7e-021
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = -1 / +3
Query: 346 CQGXXXXXXGASMXXVSFQLPDTVSLLQAHYHHIPGVFTDDFPALPPVFFDFT 188
CQG AS+ VSF P+ L + GV+T DFP PP F++T
Sbjct: 225 CQGPNNTMLAASVNNVSFVQPNIALLQSHFLNRSKGVYTTDFPTNPPFKFNYT 383
>gb|CV237346.1|CV237346 WS01227.B21.1_J01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_J01 3', mRNA sequence
Length = 875
Score = 76.7 bits (161), Expect(2) = 9e-021
Identities = 26/52 (50%), Positives = 37/52 (71%)
Frame = -1 / -1
Query: 160 QPVKGTRLYRVRYGAVVQIVFQDTGIFAAEEHPMHIHGYHFYVLATGFGNYD 5
Q + GTR YR+ + + VQ+V Q T I A E HP H+HG++F+V+ GFGN+D
Sbjct: 788 QTINGTRTYRLAFNSTVQLVLQGTTIIAPESHPFHLHGFNFFVVGKGFGNFD 633
Score = 41.8 bits (85), Expect(2) = 9e-021
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1 / -1
Query: 247 IPGVFTDDFPALPPVFFDFTSQN 179
I GVFTDDFPA+PP F++T N
Sbjct: 872 ISGVFTDDFPAMPPNSFNYTGNN 804
>gb|DN487816.1|DN487816 R006B01.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R006B01 3', mRNA sequence
Length = 675
Score = 99.1 bits (210), Expect = 1e-020
Identities = 38/83 (45%), Positives = 53/83 (63%)
Frame = -1 / -3
Query: 253 HHIPGVFTDDFPALPPVFFDFTSQNVPRALWQPVKGTRLYRVRYGAVVQIVFQDTGIFAA 74
+ I GV+ D F PP+FF+F + +P P KGT++ + Y + V+IVFQ T + A
Sbjct: 673 NQINGVYNDHFHDKPPLFFNFPADFIPSIYETPSKGTKVKVLEYNSTVEIVFQGTNVAAG 494
Query: 73 EEHPMHIHGYHFYVLATGFGNYD 5
+HPMHIHG FYV+ GFGN+D
Sbjct: 493 TDHPMHIHGTSFYVVGWGFGNFD 425
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 114,855,927
Number of Sequences: 369679
Number of extensions: 1348201
Number of successful extensions: 89592
Number of sequences better than 1.0e-020: 47
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 3329137339
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)