TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN491728.1|DN491728 V017C08.3pR Populus male catkins cDN... 330 8e-090
gb|BU885512.1|BU885512 R032C08 Populus root cDNA library Po... 322 2e-087
gb|CX658720.1|CX658720 PO01021D12 Poplar SC cDNA library Po... 318 3e-086
gb|DT506789.1|DT506789 WS02416.BR_I09 PTxD-ICC-N-A-14 Popul... 207 9e-079
gb|DT511458.1|DT511458 WS02416.B21_I09 PTxD-ICC-N-A-14 Popu... 171 9e-078
gb|CV258347.1|CV258347 WS0249.B21_E12 PTxD-ICC-N-A-14 Popul... 286 2e-076
gb|CX659260.1|CX659260 PO01028D09 Poplar SC cDNA library Po... 283 9e-076
gb|CX655702.1|CX655702 PO02038F11 Poplar SC cDNA library Po... 231 7e-060
gb|BU832026.1|BU832026 T028F01 Populus apical shoot cDNA li... 163 9e-048
gb|CV238742.1|CV238742 WS0127.B21.1_N14 PT-GT-FL-A-3 Populu... 189 2e-047
gb|DT495400.1|DT495400 WS01120.BR_F18 PT-P-FL-A-2 Populus t... 181 7e-045
gb|DT475670.1|DT475670 WS0127.BR_N14 PT-GT-FL-A-3 Populus t... 149 2e-040
gb|CX657724.1|CX657724 PO02027H05 Poplar SC cDNA library Po... 159 3e-038
gb|CA934689.1|CA934689 MTU5TS.P22.D04 Aspen stem cDNA Libra... 79 1e-028
gb|CA926925.1|CA926925 MTU6CR.P2.H01 Aspen root cDNA Librar... 119 2e-026
>gb|DN491728.1|DN491728 V017C08.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone R032C08 3', mRNA sequence
Length = 798
Score = 330 bits (715), Expect = 8e-090
Identities = 130/213 (61%), Positives = 168/213 (78%)
Frame = +1 / -2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L L G+VP L+Q I+ YL S+ V +W++SGR +++K +RLLMCWWA
Sbjct: 779 HPYAPRDLKLRGYVPNFLTQSTIVGVYLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWA 600
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAVLE
Sbjct: 599 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTAVLE 420
Query: 475 GPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIG 654
GPASLLAVYAIAS KS+S+ILQFAVCLGQLYG VYF+TAYL+G +F P++++ Y+IG
Sbjct: 419 GPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVYYIG 240
Query: 655 ANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKTK 753
AN+ W+ IP LIA+R WK+ C+A Q K+TK
Sbjct: 239 ANASWVVIPSLIAMRCWKRICSAVQVHGQKRTK 141
Score = 127 bits (272), Expect(2) = 1e-035
Identities = 69/113 (61%), Positives = 75/113 (66%)
Frame = -2 / +1
Query: 722 AAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTA 543
A Q+ FQ +AMS GI Q+ FAP+ Y G K PSK AV K T P*S P+QTA
Sbjct: 172 AEQILFQQRIAMSEGITTQEAFAPI*YT**WYGLVAK*SPSK*AVKKYTAVP*SCPKQTA 351
Query: 542 NWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
N M L DF +AIA TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 352 N*SM*LYDFPEAIAYTARRLAGPSRTAVNPSTVTVAASLAAYLESPLLYSFQT 510
Score = 42.8 bits (87), Expect(2) = 1e-035
Identities = 22/49 (44%), Positives = 25/49 (51%)
Frame = -2 / +1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEAPR* 192
K K PS I V PV AHQHMS + L LPE Q T+ E +*
Sbjct: 556 KAK*PSRIKCVRPVKAHQHMSNLFIFVILRDLPERIQMRETTRREVSK* 702
>gb|BU885512.1|BU885512 R032C08 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 657
Score = 322 bits (698), Expect = 2e-087
Identities = 127/205 (61%), Positives = 164/205 (80%)
Frame = +1 / +2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ YL S+ V +W++SGR +++K +RLLMCWWA
Sbjct: 38 HPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWA 217
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAVLE
Sbjct: 218 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTAVLE 397
Query: 475 GPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIG 654
GPASLLAVYAIAS KS+S+ILQFAVCLGQLYG VYF+TAYL+G +F P++++ Y+IG
Sbjct: 398 GPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVYYIG 577
Query: 655 ANSFWIWIPMLIAIRSWKKTCAAFQ 729
AN+ + IP LIA+R WK+ C+A Q
Sbjct: 578 ANASXVVIPSLIAMRCWKRICSAVQ 652
Score = 127 bits (272), Expect(2) = 1e-035
Identities = 69/113 (61%), Positives = 75/113 (66%)
Frame = -2 / -1
Query: 722 AAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTA 543
A Q+ FQ +AMS GI Q+ FAP+ Y G K PSK AV K T P*S P+QTA
Sbjct: 645 AEQILFQQRIAMSEGITTQEAFAPI*YT**WYGLVAK*SPSK*AVKKYTAVP*SCPKQTA 466
Query: 542 NWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
N M L DF +AIA TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 465 N*SM*LYDFPEAIAYTARRLAGPSRTAVNPSTVTVAASLAAYLESPLLYSFQT 307
Score = 42.8 bits (87), Expect(2) = 1e-035
Identities = 22/49 (44%), Positives = 25/49 (51%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEAPR* 192
K K PS I V PV AHQHMS + L LPE Q T+ E +*
Sbjct: 261 KAK*PSRIKCVRPVKAHQHMSNLFIFVILRDLPERIQMRETTRREVSK* 115
>gb|CX658720.1|CX658720 PO01021D12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01021D12 5', mRNA sequence
Length = 645
Score = 318 bits (689), Expect = 3e-086
Identities = 125/198 (63%), Positives = 159/198 (80%)
Frame = +1 / +3
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ YL SV V +W++SG +++K +RLLMCWWA
Sbjct: 51 HPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSVLVVSLIWILSGMSRKITKMNRLLMCWWA 230
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAVLE
Sbjct: 231 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTAVLE 410
Query: 475 GPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIG 654
GPASLLAVYAIAS KS+S+ILQFAVCLGQLYG VYF+TAYL+G +F P++++ Y+IG
Sbjct: 411 GPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVYYIG 590
Query: 655 ANSFWIWIPMLIAIRSWK 708
AN+ W+ IP LIA+R WK
Sbjct: 591 ANASWVVIPSLIAMRCWK 644
Score = 123 bits (264), Expect(2) = 5e-035
Identities = 68/108 (62%), Positives = 72/108 (66%)
Frame = -2 / -3
Query: 707 FQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMW 528
FQ +AMS GI Q+ FAP+ Y G K PSK AV K T P*S PRQTAN M
Sbjct: 643 FQQRIAMSEGITTQEAFAPI*YT**WYGLVAK*SPSK*AVKKYTAVP*SCPRQTAN*SM* 464
Query: 527 LKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
L DF +AIA TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 463 LYDFPEAIAYTARRLAGPSRTAVNPSTVTVAASLAAYLESPLLYSFQT 320
Score = 44.6 bits (91), Expect(2) = 5e-035
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEAPR* 192
K K PS I V PV AHQHMS + L +PE Q T+TE +*
Sbjct: 274 KAK*PSRIKCVRPVKAHQHMSNLFIFVILRDIPERIQMRETTRTEVSK* 128
>gb|DT506789.1|DT506789 WS02416.BR_I09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_I09 5', mRNA sequence
Length = 806
Score = 207 bits (446), Expect(2) = 9e-079
Identities = 81/129 (62%), Positives = 102/129 (79%)
Frame = +1 / +2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ Y +S+ V +W++SGR +L+K DRLLMCWWA
Sbjct: 182 HPYAPTDLKLPGYVPNFLTQFTIVSVYGLSSLLVVSLIWILSGRSCKLAKIDRLLMCWWA 361
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG FVF+P+F+K + ++ VWKEYSKGDSRY ARD ATVTVEG+TAV E
Sbjct: 362 FTGLTHVILEGYFVFSPEFYKDKTAHYLAGVWKEYSKGDSRYAARDAATVTVEGVTAVFE 541
Query: 475 GPASLLAVY 501
GPASLLAVY
Sbjct: 542 GPASLLAVY 568
Score = 107 bits (228), Expect(2) = 9e-079
Identities = 42/70 (60%), Positives = 55/70 (78%)
Frame = +1 / +1
Query: 502 AIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIP 681
AIAS KS+S+ILQF+V LGQLYG VYF+TAYL+G +F ++++ Y+IGAN+ W+ IP
Sbjct: 589 AIASGKSYSYILQFSVSLGQLYGTAVYFLTAYLEGDHFVASSYHYYVYYIGANASWVVIP 768
Query: 682 MLIAIRSWKK 711
LIAIR W K
Sbjct: 769 SLIAIRCWNK 798
Score = 68.4 bits (143), Expect(3) = 1e-032
Identities = 31/38 (81%), Positives = 31/38 (81%)
Frame = -2 / -3
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 564 TARRLAGPSKTAVTPSTVTVAASLAAYLESPLLYSFQT 451
Score = 56.5 bits (117), Expect(3) = 1e-032
Identities = 34/72 (47%), Positives = 42/72 (58%)
Frame = -2 / -1
Query: 716 QVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTANW 537
++ FQ +AMS GI Q+ FAP+ Y * K PSK AV K T P*S P++T N
Sbjct: 803 KILFQQRIAMSEGITTQEAFAPI*YT***YELATK*SPSK*AVRKYTAVP*SCPKETEN* 624
Query: 536 RMWLKDFLDAIA 501
M L DF +AIA
Sbjct: 623 SM*LYDFPEAIA 588
Score = 53.3 bits (110), Expect(3) = 1e-032
Identities = 25/45 (55%), Positives = 27/45 (60%)
Frame = -2 / -3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTE 204
KTK PS I V PV AHQHMS S+L NL LPE Q T+ E
Sbjct: 405 KTK*PSRITCVRPVKAHQHMSNLSILANLQDLPERIQMRETTRRE 271
>gb|DT511458.1|DT511458 WS02416.B21_I09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_I09 3', mRNA sequence
Length = 909
Score = 171 bits (369), Expect(3) = 9e-078
Identities = 64/92 (69%), Positives = 79/92 (85%)
Frame = +1 / -3
Query: 226 VWLVSGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSK 405
+W++SGR +L+K DRLLMCWWAFTGLTH+++EG FVF+P+F+K + ++ VWKEYSK
Sbjct: 736 IWILSGRSCKLAKIDRLLMCWWAFTGLTHVILEGYFVFSPEFYKDKTAHYLAGVWKEYSK 557
Query: 406 GDSRYVARDTATVTVEGITAVLEGPASLLAVY 501
GDSRY ARD ATVTVEG+TAV EGPASLLAVY
Sbjct: 556 GDSRYAARDAATVTVEGVTAVFEGPASLLAVY 461
Score = 118 bits (252), Expect(3) = 9e-078
Identities = 48/84 (57%), Positives = 63/84 (75%)
Frame = +1 / -2
Query: 502 AIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIP 681
AIAS KS+S+ILQF+V LGQLYG VYF+TAYL+G +F ++++ Y+IGAN+ W+ IP
Sbjct: 440 AIASGKSYSYILQFSVSLGQLYGTAVYFLTAYLEGDHFVASSYHYYVYYIGANASWVVIP 261
Query: 682 MLIAIRSWKKTCAAFQAEKVKKTK 753
LIAIR W K +A Q + KKTK
Sbjct: 260 SLIAIRCWNKIFSAVQVQGQKKTK 189
Score = 68.4 bits (143), Expect(3) = 9e-033
Identities = 31/38 (81%), Positives = 31/38 (81%)
Frame = -2 / +3
Query: 497 TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 465 TARRLAGPSKTAVTPSTVTVAASLAAYLESPLLYSFQT 578
Score = 60.6 bits (126), Expect(3) = 9e-033
Identities = 39/84 (46%), Positives = 47/84 (55%)
Frame = -2 / +1
Query: 752 LVFFTFSA*NAAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TR 573
LVFF A ++ FQ +AMS GI Q+ FAP+ Y * K PSK AV K T
Sbjct: 190 LVFFWP*TWTAEKILFQQRIAMSEGITTQEAFAPI*YT***YELATK*SPSK*AVRKYTA 369
Query: 572 HP*SWPRQTANWRMWLKDFLDAIA 501
P*S P++T N M L DF +AIA
Sbjct: 370 VP*SCPKETEN*SM*LYDFPEAIA 441
Score = 49.6 bits (102), Expect(3) = 9e-033
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = -2 / +3
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQ 228
KTK PS I V PV AHQHMS S+L NL LPE Q
Sbjct: 624 KTK*PSRITCVRPVKAHQHMSNLSILANLQDLPERIQ 734
Score = 40.0 bits (81), Expect(3) = 9e-078
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +1 / -2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFV 216
HPYAP +L LPG+VP L+Q I+ Y +S+ V
Sbjct: 848 HPYAPTDLKLPGYVPNFLTQFTIVSVYGLSSLLV 747
>gb|CV258347.1|CV258347 WS0249.B21_E12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_E12 3', mRNA sequence
Length = 726
Score = 286 bits (618), Expect = 2e-076
Identities = 110/167 (65%), Positives = 139/167 (83%)
Frame = +1 / -2
Query: 253 RLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARD 432
+++K +RLLMCWWAFTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD
Sbjct: 725 KITKMNRLLMCWWAFTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARD 546
Query: 433 TATVTVEGITAVLEGPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFN 612
ATVTVEG+TAVLEGPASLLAVYAIAS KS+S+ILQFAVCLGQLYG VYF+TAYL+G +
Sbjct: 545 AATVTVEGLTAVLEGPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDH 366
Query: 613 FWVGPFYFWAYFIGANSFWIWIPMLIAIRSWKKTCAAFQAEKVKKTK 753
F P++++ Y+IGAN+ W+ IP LIA+R WKK C+A Q K+TK
Sbjct: 365 FATSPYHYYVYYIGANASWVVIPSLIAMRCWKKICSAVQVHGQKRTK 225
Score = 131 bits (281), Expect(2) = 1e-033
Identities = 71/113 (62%), Positives = 76/113 (67%)
Frame = -2 / +1
Query: 722 AAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTA 543
A Q+FFQ +AMS GI Q+ FAP+ Y G K PSK AV K T P*S PRQTA
Sbjct: 256 AEQIFFQQRIAMSEGITTQEAFAPI*YT**WYGLVAK*SPSK*AVKKYTAVP*SCPRQTA 435
Query: 542 NWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
N M L DF +AIA TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 436 N*SM*LYDFPEAIAYTARRLAGPSRTAVNPSTVTVAASLAAYLESPLLYSFQT 594
Score = 32.2 bits (64), Expect(2) = 1e-033
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2 / +1
Query: 338 KTKGPSIIMWVNPVNAHQHMS 276
K K PS I V PV AHQHMS
Sbjct: 640 KAK*PSRIKCVRPVKAHQHMS 702
>gb|CX659260.1|CX659260 PO01028D09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028D09 5', mRNA sequence
Length = 583
Score = 283 bits (613), Expect = 9e-076
Identities = 112/177 (63%), Positives = 142/177 (80%)
Frame = +1 / +3
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ YL SV V +W++SG +++K +RLLMCWWA
Sbjct: 51 HPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSVLVVSLIWILSGMSRKITKMNRLLMCWWA 230
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAVLE
Sbjct: 231 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTAVLE 410
Query: 475 GPASLLAVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAY 645
GPASLLAVYAIAS KS+S+ILQFAVCLGQLYG VYF+TAYL+G +F P++++ Y
Sbjct: 411 GPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVY 581
Score = 105 bits (224), Expect(2) = 1e-029
Identities = 56/81 (69%), Positives = 57/81 (70%)
Frame = -2 / -1
Query: 626 GPTQKLKPSKYAVMK*TRHP*SWPRQTANWRMWLKDFLDAIA*TASSDAGPSNTAVIPST 447
G K PSK AV K T P*S PRQTAN M L DF +AIA TA AGPS TAV PST
Sbjct: 562 GLVAK*SPSK*AVKKYTAVP*SCPRQTAN*SM*LYDFPEAIAYTARRLAGPSRTAVNPST 383
Query: 446 VTVAVSLATYLESPLLYSFQT 384
VTVA SLA YLESPLLYSFQT
Sbjct: 382 VTVAASLAAYLESPLLYSFQT 320
Score = 44.6 bits (91), Expect(2) = 1e-029
Identities = 22/49 (44%), Positives = 26/49 (53%)
Frame = -2 / -1
Query: 338 KTKGPSIIMWVNPVNAHQHMSRRSVLDNLTHLPETSQTARKTKTEAPR* 192
K K PS I V PV AHQHMS + L +PE Q T+TE +*
Sbjct: 274 KAK*PSRIKCVRPVKAHQHMSNLFIFVILRDIPERIQMRETTRTEVSK* 128
>gb|CX655702.1|CX655702 PO02038F11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02038F11 5', mRNA sequence
Length = 624
Score = 231 bits (498), Expect = 7e-060
Identities = 91/147 (61%), Positives = 118/147 (80%)
Frame = +1 / +2
Query: 313 IMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLL 492
+++EG FVF+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAV EGPASLL
Sbjct: 2 LILEGYFVFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGVTAVFEGPASLL 181
Query: 493 AVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWI 672
AVYAIAS KS+S+ILQF+V LGQLYG VYF+TAYL+G +F ++++ Y+IGAN+ W+
Sbjct: 182 AVYAIASGKSYSYILQFSVSLGQLYGTAVYFLTAYLEGDHFAATSYHYYVYYIGANASWV 361
Query: 673 WIPMLIAIRSWKKTCAAFQAEKVKKTK 753
IP LIA+R W K C+A Q + K+TK
Sbjct: 362 VIPSLIAVRCWNKICSAVQVQGQKRTK 442
Score = 122 bits (262), Expect = 2e-027
Identities = 67/113 (59%), Positives = 73/113 (64%)
Frame = -2 / -1
Query: 722 AAQVFFQDLMAMSIGIQIQKLFAPMKYAQK*NGPTQKLKPSKYAVMK*TRHP*SWPRQTA 543
A Q+ FQ AMS GI Q+ FAP+ Y * K PSK AV K T P*S P++T
Sbjct: 411 AEQILFQQRTAMSEGITTQEAFAPI*YT***YEVAAK*SPSK*AVRKYTAVP*SCPKETE 232
Query: 542 NWRMWLKDFLDAIA*TASSDAGPSNTAVIPSTVTVAVSLATYLESPLLYSFQT 384
N M L DF +AIA TA AGPS TAV PSTVTVA SLA YLESPLLYSFQT
Sbjct: 231 N*SM*LYDFPEAIAYTARRLAGPSKTAVTPSTVTVAASLAAYLESPLLYSFQT 73
>gb|BU832026.1|BU832026 T028F01 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 163 bits (350), Expect(2) = 9e-048
Identities = 63/90 (70%), Positives = 75/90 (83%)
Frame = +1 / +3
Query: 241 GRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRY 420
GR +L+K DRLLMCWWAFTGLTH+++EG FVF+P+F+K + ++ EVWKEYSKGDSRY
Sbjct: 303 GRSRKLAKIDRLLMCWWAFTGLTHLILEGYFVFSPEFYKDKTAHYLAEVWKEYSKGDSRY 482
Query: 421 VARDTATVTVEGITAVLEGPASLLAVYAIA 510
ARD ATVTVEG+TAV EGPASLLA Y A
Sbjct: 483 AARDAATVTVEGVTAVFEGPASLLAAYDFA 572
Score = 47.8 bits (98), Expect(2) = 9e-048
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +1 / +2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVS 240
HPYAP +L LPG+VP L+Q I+ Y +S+ V +W++S
Sbjct: 68 HPYAPTDLKLPGYVPNFLTQFTIVSVYGLSSLLVVSLIWILS 193
>gb|CV238742.1|CV238742 WS0127.B21.1_N14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_N14 3', mRNA sequence
Length = 516
Score = 189 bits (408), Expect = 2e-047
Identities = 73/121 (60%), Positives = 95/121 (78%)
Frame = +1 / -2
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ YL S+ V +W++SGR +++K +RLLMCWWA
Sbjct: 371 HPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWA 192
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLE 474
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAVLE
Sbjct: 191 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTAVLE 12
Query: 475 G 477
G
Sbjct: 11 G 9
>gb|DT495400.1|DT495400 WS01120.BR_F18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_F18 5', mRNA sequence
Length = 433
Score = 181 bits (389), Expect = 7e-045
Identities = 69/117 (58%), Positives = 91/117 (77%)
Frame = +1 / +1
Query: 115 HPYAPAELDLPGFVPLKLSQVEILVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWA 294
HPYAP +L LPG+VP L+Q I+ YL S+ V +W++SGR +++K +RLLMCWWA
Sbjct: 82 HPYAPRDLKLPGYVPNFLTQSTIVGVYLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWA 261
Query: 295 FTGLTHIMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITA 465
FTGLTH+++EG F F+P+F+K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TA
Sbjct: 262 FTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRYAARDAATVTVEGLTA 432
>gb|DT475670.1|DT475670 WS0127.BR_N14 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_N14 5', mRNA sequence
Length = 466
Score = 149 bits (320), Expect(2) = 2e-040
Identities = 55/91 (60%), Positives = 73/91 (80%)
Frame = +1 / +1
Query: 193 YLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKENPN 372
YL S+ V +W++SGR +++K +RLLMCWWAFTGLTH+++EG F F+P+F+K + +
Sbjct: 193 YLLTSLLVVSLIWILSGRSRKITKMNRLLMCWWAFTGLTHLILEGYFAFSPEFYKDKTAH 372
Query: 373 FFDEVWKEYSKGDSRYVARDTATVTVEGITA 465
+ EVWKEYSKGDSRY ARD ATVTVEG+TA
Sbjct: 373 YLAEVWKEYSKGDSRYAARDAATVTVEGLTA 465
Score = 36.8 bits (74), Expect(2) = 2e-040
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +3
Query: 115 HPYAPAELDLPGFVPLKLSQVEIL 186
HPYAP +L LPG+VP L+Q I+
Sbjct: 114 HPYAPRDLKLPGYVPNFLTQSTIV 185
>gb|CX657724.1|CX657724 PO02027H05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02027H05 5', mRNA sequence
Length = 351
Score = 159 bits (341), Expect = 3e-038
Identities = 66/116 (56%), Positives = 87/116 (75%)
Frame = +1 / +2
Query: 313 IMIEGPFVFTPDFFKKENPNFFDEVWKEYSKGDSRYVARDTATVTVEGITAVLEGPASLL 492
+++EG VF+P+F K + ++ EVWKEYSKGDSRY ARD ATVTVEG+TAV EGPASLL
Sbjct: 2 LILEGYSVFSPEFHKDKTAHYLPEVWKEYSKGDSRYAARDAATVTVEGVTAVSEGPASLL 181
Query: 493 AVYAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGAN 660
VYAI S KS+++ILQ +V GQ YG VY +TAYL+G + ++++ Y+I AN
Sbjct: 182 PVYAIGSGKSYTYILQSSVRSGQXYGTPVYSLTAYLEGDHSAASSYHYYVYYIRAN 349
>gb|CA934689.1|CA934689 MTU5TS.P22.D04 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 403
Score = 79.4 bits (167), Expect(2) = 1e-028
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +1 / +3
Query: 391 KEYSKGDSRYVARDTATVTVEGITAVLEGPASLLAVY 501
KEYSKGDSRY ARD ATVTVEG+TAV EGPASLLAVY
Sbjct: 21 KEYSKGDSRYAARDAATVTVEGVTAVFEGPASLLAVY 131
Score = 69.3 bits (145), Expect(2) = 1e-028
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +1 / +3
Query: 499 YAIASRKSFSHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFW 639
YAIAS KS+S+ILQF+V LGQ YG VYF+TAYL+G +F ++++
Sbjct: 261 YAIASGKSYSYILQFSVSLGQFYGTAVYFLTAYLEGDHFAASSYHYY 401
>gb|CA926925.1|CA926925 MTU6CR.P2.H01 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 396
Score = 119 bits (255), Expect = 2e-026
Identities = 45/76 (59%), Positives = 59/76 (77%)
Frame = +1 / -1
Query: 526 SHILQFAVCLGQLYGCLVYFITAYLDGFNFWVGPFYFWAYFIGANSFWIWIPMLIAIRSW 705
S+ILQFAVCLGQLYG VYF+TAYL+G +F P++++ Y+IGAN+ W+ IP LIA+R W
Sbjct: 396 SYILQFAVCLGQLYGTAVYFLTAYLEGDHFATSPYHYYVYYIGANASWVVIPSLIAMRCW 217
Query: 706 KKTCAAFQAEKVKKTK 753
KK C+A Q K+TK
Sbjct: 216 KKICSAVQVHGQKRTK 169
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 394,843,964
Number of Sequences: 369679
Number of extensions: 5172552
Number of successful extensions: 39561
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11999156260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)