TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AB021176.2.1
         (1318 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA928544.1|CA928544  MTU6TR.P3.H08 Aspen root cDNA Librar...   100   2e-040

>gb|CA928544.1|CA928544 MTU6TR.P3.H08 Aspen root cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 647

 Score =  100 bits (214), Expect(2) = 2e-040
 Identities = 36/85 (42%), Positives = 57/85 (67%)
 Frame = +1 / +2

                                                                       
Query: 499 MSRDFTWIQAIAVLFDGHELYVGARKTAAWDDDVDRMELTLDGEPVRLLPGTDAAWTSGA 678
           ++RDFTW+Q++ +LF  H+L++GA+ TA WDD VD + L LDGEP+ L  G    W +  
Sbjct: 392 LTRDFTWVQSLGILFGTHKLFIGAQNTATWDDSVDHLSLALDGEPIYLPDGEGMKWKAEI 571

                                    
Query: 679 VPALSVTRTSAANGVLVSLDGRFTI 753
            P++++TR+S A  V++  +  F I
Sbjct: 572 SPSVTITRSSDAYAVVIEAEDIFKI 646




 Score = 86.3 bits (182), Expect(2) = 2e-040
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +1 / +2

                                                    
Query: 361 CGDPRFIGGDGNAFYFHGRRDADFCVLSDRDLHINAHFIGK 483
           C DPRFIGGDG  FYFHG++D DFC+++D +LHINAHFIG+
Sbjct: 257 CQDPRFIGGDGITFYFHGKKDRDFCIVADSNLHINAHFIGR 379



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 461,394,761
Number of Sequences: 369679
Number of extensions: 5680842
Number of successful extensions: 48176
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 18560811885
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)