TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU875945.1|BU875945 V013D11 Populus flower cDNA library ... 83 2e-034
gb|DT472225.1|DT472225 WS01225.BR.1_O10 PT-GT-FL-A-3 Populu... 83 3e-034
gb|BU880539.1|BU880539 UM51TD09 Populus flower cDNA library... 83 3e-034
gb|BU825949.1|BU825949 UK114TH12 Populus apical shoot cDNA ... 80 7e-034
gb|DV462960.1|DV462960 MTUNUL1.P1.H06 NUL Populus fremontii... 83 1e-033
gb|BU826983.1|BU826983 UK127TB01 Populus apical shoot cDNA ... 80 5e-031
gb|DN500339.1|DN500339 UK121TA08.5pR Populus apical shoot c... 64 2e-030
gb|DT475969.1|DT475969 WS0128.BR_N01 PT-GT-FL-A-3 Populus t... 83 2e-027
gb|BU883537.1|BU883537 UM91TH11 Populus flower cDNA library... 83 4e-027
gb|DT485577.1|DT485577 WS02528.B21_J16 PT-MB-N-A-15 Populus... 57 2e-025
gb|BU881351.1|BU881351 UM61TF06 Populus flower cDNA library... 58 4e-025
gb|BU883489.1|BU883489 UM91TD10 Populus flower cDNA library... 83 3e-022
gb|BU880822.1|BU880822 UM55TC07 Populus flower cDNA library... 83 3e-022
gb|CK101564.1|CK101564 F100P05.5pR Populus flower cDNA libr... 83 2e-021
>gb|BU875945.1|BU875945 V013D11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 595
Score = 83.1 bits (175), Expect(3) = 2e-034
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +1
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 34 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 213
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 214 SGPNTLYAVSELVKVV 261
Score = 59.3 bits (123), Expect(3) = 2e-034
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2 / +1
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N K + + PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 376 NLKNQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 531
Score = 42.3 bits (86), Expect(3) = 2e-034
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ Q LNDLPGNDFN +F + F +++
Sbjct: 286 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENL 381
>gb|DT472225.1|DT472225 WS01225.BR.1_O10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_O10 5', mRNA sequence
Length = 884
Score = 83.1 bits (175), Expect(4) = 3e-034
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 24 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 203
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 204 SGPNTLYAVSELVKVV 251
Score = 58.3 bits (121), Expect(4) = 3e-034
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N K + + PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 366 NLKKQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 521
Score = 42.8 bits (87), Expect(4) = 3e-034
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 276 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 377
Score = 24.0 bits (46), Expect(4) = 3e-034
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1 / +3
Query: 862 FSSFLKLPSKKILFGGPKGLTIILR 936
F+ FLK S++++ GG LTI+ R
Sbjct: 603 FTLFLKCRSEELVAGGRMVLTILGR 677
>gb|BU880539.1|BU880539 UM51TD09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 551
Score = 83.1 bits (175), Expect(3) = 3e-034
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 3 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 182
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 183 SGPNTLYAVSELVKVV 230
Score = 58.3 bits (121), Expect(3) = 3e-034
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N K + + PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 345 NLKKQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 500
Score = 42.8 bits (87), Expect(3) = 3e-034
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 255 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 356
>gb|BU825949.1|BU825949 UK114TH12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 499
Score = 79.9 bits (168), Expect(3) = 7e-034
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2 / +2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GE SY +NS +Q KV+ + +EA Y + P ++ +ADLGCS
Sbjct: 2 MEVAQVLHMNGGRGEKSYAENSLVQRKVISITMRIAKEAITNLYCSTFPTSLAIADLGCS 181
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 182 SGPNTLYAVSELVKVV 229
Score = 60.2 bits (125), Expect(3) = 7e-034
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +2 / +2
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N K + + L PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 344 NLKKQMGDGLGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 499
Score = 42.8 bits (87), Expect(3) = 7e-034
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 254 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 355
>gb|DV462960.1|DV462960 MTUNUL1.P1.H06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 785
Score = 83.1 bits (175), Expect(4) = 1e-033
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 66 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 245
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 246 SGPNTLYAVSELVKVV 293
Score = 56.1 bits (116), Expect(4) = 1e-033
Identities = 19/52 (36%), Positives = 33/52 (63%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N + + PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 408 NLNKQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 563
Score = 42.3 bits (86), Expect(4) = 1e-033
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSI 430
H P+ Q LNDLPGNDFN +F + F +++
Sbjct: 318 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENL 413
Score = 24.0 bits (46), Expect(4) = 1e-033
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1 / +3
Query: 862 FSSFLKLPSKKILFGGPKGLTIILR 936
F+ FLK S++++ GG LTI+ R
Sbjct: 645 FTLFLKCRSEELVAGGRMVLTILGR 719
>gb|BU826983.1|BU826983 UK127TB01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 481
Score = 79.9 bits (168), Expect(3) = 5e-031
Identities = 32/76 (42%), Positives = 48/76 (63%)
Frame = +2 / +2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GE SY +NS +Q KV+ + +EA Y + P ++ +ADLGCS
Sbjct: 2 MEVAQVLHMNGGRGEKSYAENSLVQRKVISITMRIAKEAITNLYCSTFPTSLAIADLGCS 181
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 182 SGPNTLYAVSELVKVV 229
Score = 50.6 bits (104), Expect(3) = 5e-031
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2 / +2
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHS 547
N K + + L PC+ +G+PGSFY R+F ++S+H HS
Sbjct: 344 NLKKQMGDGLGPCFFAGVPGSFYCRLFRAKSLHFVHS 454
Score = 42.8 bits (87), Expect(3) = 5e-031
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +2
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 254 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 355
>gb|DN500339.1|DN500339 UK121TA08.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK121TA08 5', mRNA
sequence
Length = 686
Score = 64.3 bits (134), Expect(4) = 2e-030
Identities = 26/76 (34%), Positives = 44/76 (57%)
Frame = +2 / +2
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GE Y +NS +Q +V+ + ++A Y + P ++ + LGCS
Sbjct: 98 MEVAQVLHMNGGRGEKIYAENSLVQRRVISITMRIAKKAITNLYCSTFPTSLPITHLGCS 277
Query: 257 SGPNTLRFISEVIGII 304
S PNTL +SE++ ++
Sbjct: 278 SRPNTLYAVSELVKVV 325
Score = 55.1 bits (114), Expect(4) = 2e-030
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +2 / +2
Query: 434 RNHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLKDTQ 601
+N K + L PC+ + LPGSFY +F ++S+H HS +++ W S+ + L+ T+
Sbjct: 437 KNLKKQMGYGLGPCFFARLPGSFYCTLFRAKSLHFVHSSYTLMWLSRVPEGLEGTR 604
Score = 44.6 bits (91), Expect(4) = 2e-030
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2 / +2
Query: 332 RHDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
RH P+ Q LNDLP NDFN +F + +F K++ +
Sbjct: 347 RHQSPKYQLLLNDLPRNDFNAIFKSLARFQKNLKK 451
Score = 29.5 bits (58), Expect(4) = 2e-030
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2 / +1
Query: 791 DIYITKNIPPPMVEMFHQHFVKEFF 865
+IY+ PP ++ ++ HF K+F+
Sbjct: 607 NIYMASTSPPSVLRAYYMHFQKDFY 681
>gb|DT475969.1|DT475969 WS0128.BR_N01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_N01 5', mRNA sequence
Length = 445
Score = 83.1 bits (175), Expect(3) = 2e-027
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 24 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 203
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 204 SGPNTLYAVSELVKVV 251
Score = 42.8 bits (87), Expect(3) = 2e-027
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 276 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 377
Score = 35.0 bits (70), Expect(3) = 2e-027
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRI 514
N K + + PC+ +G+PGSFY R+
Sbjct: 366 NLKKQMGDGFGPCFFAGVPGSFYCRL 443
>gb|BU883537.1|BU883537 UM91TH11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 465
Score = 83.1 bits (175), Expect(3) = 4e-027
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 3 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 182
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 183 SGPNTLYAVSELVKVV 230
Score = 42.8 bits (87), Expect(3) = 4e-027
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 255 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 356
Score = 34.1 bits (68), Expect(3) = 4e-027
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2 / +3
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSE 526
N K + + PC+ + +PGSFY R+ P +
Sbjct: 345 NLKKQMGDGFGPCFFA*VPGSFYCRLLPCQ 434
>gb|DT485577.1|DT485577 WS02528.B21_J16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_J16 3', mRNA sequence
Length = 928
Score = 57.0 bits (118), Expect(4) = 2e-025
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2 / +3
Query: 470 PCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQAS 580
PC+I +P +FY R+FP+ S+H HS +S+HW S+ +
Sbjct: 363 PCFIGAMPENFYGRLFPARSLHFVHSSYSLHWFSEVN 473
Score = 47.8 bits (98), Expect(4) = 2e-025
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2 / +3
Query: 206 YSALLPQTMVVADLGCSSGPNTLRFISEVIGIIARHCKEHDRR 334
YS P+ + +AD+GCSSGPNT I E+I I C++ +R+
Sbjct: 117 YSKSFPECITMADMGCSSGPNTFLPIWEIIEAIDETCRKLNRK 245
Score = 42.8 bits (87), Expect(4) = 2e-025
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +2 / +3
Query: 344 PQLQFFLNDLPGNDFNNLFLLIQQFNKSIARNHKGE 451
P LQ FLNDLP NDFN++F + F+K + G+
Sbjct: 249 PILQVFLNDLPRNDFNSIFRSLPGFHKKLEEEMGGK 356
Score = 24.0 bits (46), Expect(4) = 2e-025
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2 / +1
Query: 149 QEKVMFQIKPVLEE 190
Q+KVM + KP+L+E
Sbjct: 55 QKKVMLKAKPILQE 96
>gb|BU881351.1|BU881351 UM61TF06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 551
Score = 58.3 bits (121), Expect(3) = 4e-025
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +2 / +1
Query: 437 NHKGEAAEALPPCYISGLPGSFYTRIFPSESVHLFHSLFSVHWHSQASQQLK 592
N K + + PC+ +G+PGSFY R+F ++S+H HS +S+ W S+ + L+
Sbjct: 262 NLKKQMGDGFGPCFFAGVPGSFYCRLFRAKSLHFVHSSYSLMWLSRVPEGLE 417
Score = 51.9 bits (107), Expect(3) = 4e-025
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2 / +1
Query: 179 VLEEATRAAYSALLPQTMVVADLGCSSGPNTLRFISEVIGII 304
+ EEA Y P ++ +ADLGCSSGPNTL +SE++ ++
Sbjct: 22 IAEEAITNIYCNTFPTSLAIADLGCSSGPNTLYAVSELVKVV 147
Score = 42.8 bits (87), Expect(3) = 4e-025
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 172 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 273
>gb|BU883489.1|BU883489 UM91TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 482
Score = 83.1 bits (175), Expect(2) = 3e-022
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +1
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 103 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 282
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 283 SGPNTLYAVSELVKVV 330
Score = 42.8 bits (87), Expect(2) = 3e-022
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 355 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 456
>gb|BU880822.1|BU880822 UM55TC07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 394
Score = 83.1 bits (175), Expect(2) = 3e-022
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +3
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 3 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 182
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 183 SGPNTLYAVSELVKVV 230
Score = 42.8 bits (87), Expect(2) = 3e-022
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2 / +3
Query: 335 HDYPQLQFFLNDLPGNDFNNLFLLIQQFNKSIAR 436
H P+ Q LNDLPGNDFN +F + F +++ +
Sbjct: 255 HQSPEYQVLLNDLPGNDFNAIFKSLAGFQENLKK 356
>gb|CK101564.1|CK101564 F100P05.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F100P05 5', mRNA sequence
Length = 490
Score = 83.1 bits (175), Expect(2) = 2e-021
Identities = 34/76 (44%), Positives = 48/76 (63%)
Frame = +2 / +1
Query: 77 MTIERDLHMATGNGETSYTKNSRIQEKVMFQIKPVLEEATRAAYSALLPQTMVVADLGCS 256
M + + LHM G GETSY +NS +Q KV+ + EEA Y P ++ +ADLGCS
Sbjct: 142 MEVAQVLHMNGGRGETSYAQNSLVQRKVISITMRIAEEAITNIYCNTFPTSLAIADLGCS 321
Query: 257 SGPNTLRFISEVIGII 304
SGPNTL +SE++ ++
Sbjct: 322 SGPNTLYAVSELVKVV 369
Score = 40.0 bits (81), Expect(2) = 2e-021
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2 / +1
Query: 335 HDYPQLQFFLNDLPGNDFNNLF 400
H P+ Q LNDLPGNDFN +F
Sbjct: 394 HQSPEYQVLLNDLPGNDFNAIF 459
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 626,324,410
Number of Sequences: 369679
Number of extensions: 9284745
Number of successful extensions: 54101
Number of sequences better than 1.0e-020: 14
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 16246736637
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)