TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010745.2.1
(805 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA librar... 103 1e-036
gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus t... 87 6e-034
gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Popu... 87 6e-034
gb|CN523249.1|CN523249 GQ015M01.B3_E15 GQ015 Populus tricho... 114 7e-031
gb|CK087245.1|CK087245 A001P37.3pR Hybrid aspen plasmid lib... 118 2e-030
gb|DT508271.1|DT508271 WS02420.BR_I08 PTxD-ICC-N-A-14 Popul... 117 3e-030
gb|DT512885.1|DT512885 WS02420.B21_I08 PTxD-ICC-N-A-14 Popu... 117 3e-030
gb|CV254083.1|CV254083 WS0223.B21_P11 PTxD-ICC-A-12 Populus... 117 3e-030
gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library... 119 4e-029
gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus t... 87 8e-026
gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus t... 87 8e-026
gb|BI130255.1|BI130255 G102P91Y Populus cambium cDNA librar... 67 8e-026
gb|CV235854.1|CV235854 WS01221.B21_N19 PT-GT-FL-A-3 Populus... 115 3e-025
gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA librar... 113 2e-024
gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA libr... 87 6e-024
gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Popul... 110 1e-023
gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus t... 110 1e-023
gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated wi... 109 2e-023
gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Po... 107 1e-022
gb|BP932598.1|BP932598 BP932598 full-length enriched poplar... 77 2e-021
gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated wit... 87 6e-021
>gb|DN488210.1|DN488210 R041F03.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041F03 3', mRNA sequence
Length = 842
Score = 103 bits (220), Expect(3) = 1e-036
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = -2 / -1
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLY 226
S+ + EE + D R Y+ GY+ L A++ GA+VRGYF W+ LDNFEW FGY ++GLY
Sbjct: 362 SNGNIEEFLHDTGRVEYMSGYLDALLTAMKKGADVRGYFAWSFLDNFEWTFGYTRRFGLY 183
Query: 225 HVDFDTQERTXRMSARWYQ 169
HVD+ T +RT R+ + Q
Sbjct: 182 HVDYTTMKRTPRLISNLVQ 126
Score = 44.6 bits (91), Expect(3) = 1e-036
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -2 / -1
Query: 678 LRYKADFIGLNHYTAIYARDCLRSPCNLG 592
LR DFIG+NHYT+ Y +DC+ S C G
Sbjct: 644 LRKGLDFIGMNHYTSYYVQDCILSVCEPG 558
Score = 43.2 bits (88), Expect(3) = 1e-036
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2 / -1
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+ DGV IG + + +E + YV RY P+ ITENGY Q S+++
Sbjct: 518 QEKDGVPIGKPSEVDWIHVYSRGMEKMVTYVKERYNNIPMIITENGYSQVSNSN 357
>gb|CV271153.1|CV271153 WS0153.B21_O23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0153_O23 3', mRNA sequence
Length = 914
Score = 86.8 bits (183), Expect(4) = 6e-034
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / -1
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
DA E++DD R Y +GY+ +++A+++G V+GYF W+LLDNFEWA GY ++GL +
Sbjct: 539 DAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVY 360
Query: 222 VDF 214
VD+
Sbjct: 359 VDY 351
Score = 45.1 bits (92), Expect(4) = 6e-034
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = -2 / -1
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
GDYP MREILG LP FT E+K LL
Sbjct: 890 GDYPEVMREILGEQLPQFTEEDKELL 813
Score = 36.3 bits (73), Expect(4) = 6e-034
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2 / -1
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSP 604
EE LLR DF+GLNHYT+ + SP
Sbjct: 833 EEDKELLRNPMDFVGLNHYTSRFITHATESP 741
Score = 31.8 bits (63), Expect(4) = 6e-034
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2 / -1
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
E + G IG A + P + + Y+ +Y +Y+TENG
Sbjct: 695 EFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENG 558
>gb|DT514016.1|DT514016 WS02423.B21_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K04 3', mRNA sequence
Length = 910
Score = 86.8 bits (183), Expect(4) = 6e-034
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / -3
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
DA E++DD R Y +GY+ +++A+++G V+GYF W+LLDNFEWA GY ++GL +
Sbjct: 425 DAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVY 246
Query: 222 VDF 214
VD+
Sbjct: 245 VDY 237
Score = 45.1 bits (92), Expect(4) = 6e-034
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = -2 / -3
Query: 756 GDYPGAMREILGSDLPTFTAEEKALL 679
GDYP MREILG LP FT E+K LL
Sbjct: 776 GDYPEVMREILGEQLPKFTEEDKELL 699
Score = 36.3 bits (73), Expect(4) = 6e-034
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2 / -3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSP 604
EE LLR DF+GLNHYT+ + SP
Sbjct: 719 EEDKELLRNPMDFVGLNHYTSRFITHATESP 627
Score = 31.8 bits (63), Expect(4) = 6e-034
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2 / -3
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
E + G IG A + P + + Y+ +Y +Y+TENG
Sbjct: 581 EFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENG 444
>gb|CN523249.1|CN523249 GQ015M01.B3_E15 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_E15 5', mRNA sequence
Length = 727
Score = 114 bits (243), Expect(2) = 7e-031
Identities = 39/81 (48%), Positives = 59/81 (72%)
Frame = -2 / -2
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
+ + + ++ DV+R Y+ Y+ L A+R GA+VRGYF W+LLDNFEW GY +++GLYH
Sbjct: 561 NVTTKAVLKDVQRVEYMSSYLDALETAVRKGADVRGYFAWSLLDNFEWTSGYTIRFGLYH 382
Query: 222 VDFDTQERTXRMSARWYQGFL 160
VDF T +RT ++SA WY+ ++
Sbjct: 381 VDFSTLKRTRKLSATWYKDYI 319
Score = 40.0 bits (81), Expect(2) = 7e-031
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -2 / -2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGY 415
D IG TA + +E + Y RY P+YITENGY
Sbjct: 711 DXXXIGQXTAXDXLXXXXQGMEKLVTYXKDRYNNIPMYITENGY 580
>gb|CK087245.1|CK087245 A001P37.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P37 3', mRNA sequence
Length = 816
Score = 118 bits (252), Expect(2) = 2e-030
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = -2 / -2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRR 364
GV+IG ++VP + A+ Y+ RY + ++ENG + +R + + D R
Sbjct: 494 GVEIGPRANSYWLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKALQDTTR 315
Query: 363 KNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMS 184
Y + Y++ L KA +GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R +MS
Sbjct: 314 IGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKMS 135
Query: 183 ARWYQGFL 160
A W++ L
Sbjct: 134 ANWFKHLL 111
Score = 34.1 bits (68), Expect(2) = 2e-030
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
EE+ +++ DF+G+NHYT Y D
Sbjct: 644 EEEVKMVKGSMDFVGINHYTTYYMYD 567
>gb|DT508271.1|DT508271 WS02420.BR_I08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I08 5', mRNA sequence
Length = 673
Score = 117 bits (251), Expect(2) = 3e-030
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = -2 / +2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRR 364
GV+IG ++VP + A+ Y+ RY + ++ENG + +R + + D R
Sbjct: 179 GVEIGPRANSYWLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTR 358
Query: 363 KNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMS 184
Y + Y++ L KA +GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R +MS
Sbjct: 359 IGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKMS 538
Query: 183 ARWYQGFL 160
A W++ L
Sbjct: 539 ANWFKHLL 562
Score = 34.1 bits (68), Expect(2) = 3e-030
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2 / +2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
EE+ +++ DF+G+NHYT Y D
Sbjct: 29 EEEVKMVKGSMDFVGINHYTTYYMYD 106
>gb|DT512885.1|DT512885 WS02420.B21_I08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I08 3', mRNA sequence
Length = 673
Score = 117 bits (251), Expect(2) = 3e-030
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = -2 / -2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRR 364
GV+IG ++VP + A+ Y+ RY + ++ENG + +R + + D R
Sbjct: 495 GVEIGPRANSYWLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTR 316
Query: 363 KNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMS 184
Y + Y++ L KA +GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R +MS
Sbjct: 315 IGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKMS 136
Query: 183 ARWYQGFL 160
A W++ L
Sbjct: 135 ANWFKHLL 112
Score = 34.1 bits (68), Expect(2) = 3e-030
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
EE+ +++ DF+G+NHYT Y D
Sbjct: 645 EEEVKMVKGSMDFVGINHYTTYYMYD 568
>gb|CV254083.1|CV254083 WS0223.B21_P11 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_P11 3', mRNA sequence
Length = 667
Score = 117 bits (251), Expect(2) = 3e-030
Identities = 46/128 (35%), Positives = 74/128 (57%)
Frame = -2 / -2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRR 364
GV+IG ++VP + A+ Y+ RY + ++ENG + +R + + D R
Sbjct: 492 GVEIGPRANSYWLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTR 313
Query: 363 KNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMS 184
Y + Y++ L KA +GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R +MS
Sbjct: 312 IGYYKAYLSQLKKAADDGANLVGYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKMS 133
Query: 183 ARWYQGFL 160
A W++ L
Sbjct: 132 ANWFKHLL 109
Score = 34.1 bits (68), Expect(2) = 3e-030
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2 / -2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
EE+ +++ DF+G+NHYT Y D
Sbjct: 642 EEEVKMVKGSMDFVGINHYTTYYMYD 565
>gb|BU880315.1|BU880315 UM44TC09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 617
Score = 119 bits (254), Expect(2) = 4e-029
Identities = 47/131 (35%), Positives = 74/131 (56%)
Frame = -2 / +3
Query: 552 RDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDD 373
+ +GV IG ++VP + A+ Y+ RY + ++ENG + +R + + D
Sbjct: 183 KKNGVPIGPRANSNWLYNVPWGMYKAVMYIKERYGNPTIILSENGMDDPGNFTRSKALHD 362
Query: 372 VRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTX 193
R Y + Y+T L KA GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R
Sbjct: 363 TTRVGYFKAYLTQLKKAADEGANLAGYFAWSLLDNFEWRSGYTSRFGIVYVDYTNLKRYP 542
Query: 192 RMSARWYQGFL 160
+MSA W++ L
Sbjct: 543 KMSAYWFKKLL 575
Score = 29.0 bits (57), Expect(2) = 4e-029
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2 / +3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
++K +++ DF+G+N YT Y D
Sbjct: 42 KKKVKMVKGSMDFVGINQYTTFYMYD 119
>gb|CV276879.1|CV276879 WS0142.B21_A18 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_A18 3', mRNA sequence
Length = 916
Score = 86.8 bits (183), Expect(3) = 8e-026
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / -2
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
DA E++DD R Y +GY+ +++A+++G V+GYF W+LLDNFEWA GY ++GL +
Sbjct: 594 DAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVY 415
Query: 222 VDF 214
VD+
Sbjct: 414 VDY 406
Score = 36.3 bits (73), Expect(3) = 8e-026
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2 / -2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSP 604
EE LLR DF+GLNHYT+ + SP
Sbjct: 888 EEDKELLRNPMDFVGLNHYTSRFITHATESP 796
Score = 31.8 bits (63), Expect(3) = 8e-026
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2 / -2
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
E + G IG A + P + + Y+ +Y +Y+TENG
Sbjct: 750 EFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENG 613
>gb|CV276936.1|CV276936 WS0142.B21_D09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_D09 3', mRNA sequence
Length = 885
Score = 86.8 bits (183), Expect(3) = 8e-026
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / -3
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
DA E++DD R Y +GY+ +++A+++G V+GYF W+LLDNFEWA GY ++GL +
Sbjct: 571 DAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVY 392
Query: 222 VDF 214
VD+
Sbjct: 391 VDY 383
Score = 36.3 bits (73), Expect(3) = 8e-026
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2 / -3
Query: 696 EEKALLLRYKADFIGLNHYTAIYARDCLRSP 604
EE LLR DF+GLNHYT+ + SP
Sbjct: 865 EEDKELLRNPMDFVGLNHYTSRFITHATESP 773
Score = 31.8 bits (63), Expect(3) = 8e-026
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2 / -3
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
E + G IG A + P + + Y+ +Y +Y+TENG
Sbjct: 727 EFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENG 590
>gb|BI130255.1|BI130255 G102P91Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 485
Score = 67.0 bits (140), Expect(3) = 8e-026
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = -2 / +1
Query: 405 SDASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAF 253
S+ + EE + D R Y+ GY+ L A++ GA+VRGYF W+ LDN EW F
Sbjct: 331 SNGNIEEFLHDTGRVEYMSGYLDALLTAMKKGADVRGYFAWSFLDNLEWTF 483
Score = 44.6 bits (91), Expect(3) = 8e-026
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -2 / +1
Query: 678 LRYKADFIGLNHYTAIYARDCLRSPCNLG 592
LR DFIG+NHYT+ Y +DC+ S C G
Sbjct: 49 LRKGLDFIGMNHYTSYYVQDCILSVCEPG 135
Score = 43.2 bits (88), Expect(3) = 8e-026
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2 / +1
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
+ DGV IG + + +E + YV RY P+ ITENGY Q S+++
Sbjct: 175 QEKDGVPIGKPSEVDWIHVYSRGMEKMVTYVKERYNNIPMIITENGYSQVSNSN 336
>gb|CV235854.1|CV235854 WS01221.B21_N19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_N19 3', mRNA sequence
Length = 536
Score = 115 bits (246), Expect = 3e-025
Identities = 42/85 (49%), Positives = 61/85 (71%)
Frame = -2 / -1
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFD 211
+ L+ D R N+ + Y+ L++A+RNGA+VRGYFVW+L+DNFEW GY +YGLY+VD
Sbjct: 494 QALLQDTNRVNFHKSYLAALARAIRNGADVRGYFVWSLVDNFEWIDGYSQRYGLYYVDRQ 315
Query: 210 TQERTXRMSARWYQGFLTAXTSQRD 136
T ER ++SA+WY+ FL +S +
Sbjct: 314 TLERVPKLSAKWYKNFLANGSSNHN 240
>gb|BU888888.1|BU888888 P013G12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 476
Score = 113 bits (241), Expect = 2e-024
Identities = 42/115 (36%), Positives = 69/115 (60%)
Frame = -2 / +1
Query: 504 FDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSK 325
++VP + A+ Y+ RY + ++ENG + +R + + D R Y + Y++ L K
Sbjct: 34 YNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKALQDTTRIGYYKAYLSQLKK 213
Query: 324 ALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
A +GAN+ GYF W+LLDNFEW GY ++G+ +VD+ +R +MSA W++ L
Sbjct: 214 AAVDGANLVGYFAWSLLDNFEWTSGYTSRFGIVYVDYSNLKRYPKMSANWFKHLL 378
>gb|CK090495.1|CK090495 F008P84.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F008P84 3', mRNA sequence
Length = 793
Score = 86.8 bits (183), Expect(3) = 6e-024
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = -2 / -2
Query: 402 DASREELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYH 223
DA E++DD R Y +GY+ +++A+++G V+GYF W+LLDNFEWA GY ++GL +
Sbjct: 519 DAPLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVY 340
Query: 222 VDF 214
VD+
Sbjct: 339 VDY 331
Score = 31.8 bits (63), Expect(3) = 6e-024
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2 / -2
Query: 555 ERDDGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENG 418
E + G IG A + P + + Y+ +Y +Y+TENG
Sbjct: 675 EFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENG 538
Score = 29.9 bits (59), Expect(3) = 6e-024
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2 / -2
Query: 663 DFIGLNHYTAIYARDCLRSP 604
DF+GLNHYT+ + SP
Sbjct: 780 DFVGLNHYTSRFITHATESP 721
>gb|CV261973.1|CV261973 WS02018.B21_E17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_E17 3', mRNA sequence
Length = 832
Score = 110 bits (235), Expect = 1e-023
Identities = 41/106 (38%), Positives = 63/106 (59%)
Frame = -2 / -3
Query: 477 AIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVR 298
A+ Y+ RY + ++ENG + +R + + D R Y + Y+T L KA GAN+
Sbjct: 824 AVMYIKERYGNPTIILSENGMDDPGNFTRSKALHDTTRIGYFKAYLTQLKKAADEGANLA 645
Query: 297 GYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GYF W+LLDNFEW GY ++G+ +VD+ +R +MSA W++ L
Sbjct: 644 GYFAWSLLDNFEWRSGYTSRFGIVYVDYTNLKRYPKMSAYWFKKLL 507
>gb|CV271536.1|CV271536 WS0154.B21_P15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_P15 3', mRNA sequence
Length = 479
Score = 110 bits (235), Expect = 1e-023
Identities = 41/106 (38%), Positives = 63/106 (59%)
Frame = -2 / -2
Query: 477 AIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVR 298
A+ Y+ RY + ++ENG + +R + + D R Y + Y+T L KA GAN+
Sbjct: 472 AVMYIKERYGNPTIILSENGMDDPGNFTRSKALHDTTRIGYFKAYLTQLKKAADEGANLA 293
Query: 297 GYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GYF W+LLDNFEW GY ++G+ +VD+ +R +MSA W++ L
Sbjct: 292 GYFAWSLLDNFEWRSGYTSRFGIVYVDYTNLKRYPKMSAYWFKKLL 155
>gb|CX174097.1|CX174097 D08_69-100_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 443
Score = 109 bits (233), Expect = 2e-023
Identities = 40/106 (37%), Positives = 64/106 (60%)
Frame = -2 / +3
Query: 477 AIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRRKNYLQGYITYLSKALRNGANVR 298
A+ Y+ RY + ++ENG + +R + + D R Y + Y++ L KA +GAN+
Sbjct: 9 AVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTRIGYYKAYLSQLKKAADDGANMV 188
Query: 297 GYFVWTLLDNFEWAFGYRLKYGLYHVDFDTQERTXRMSARWYQGFL 160
GYF W+LLDNFEW GY ++G+ +VD+ +R +MSA W++ L
Sbjct: 189 GYFAWSLLDNFEWRLGYTSRFGIVYVDYSNLKRYPKMSANWFKHLL 326
>gb|CX654220.1|CX654220 PO02015A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02015A05 5', mRNA sequence
Length = 614
Score = 107 bits (228), Expect = 1e-022
Identities = 42/111 (37%), Positives = 66/111 (59%)
Frame = -2 / -2
Query: 546 DGVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVR 367
+GV IG T L + P I+ + Y+ YK PV+ITENG + + + D
Sbjct: 535 NGVPIGTPTDLNWLYVYPRGIQDVLLYIKDNYKNPPVFITENGIAENASRPLAFALKDSW 356
Query: 366 RKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
R Y +++YL KA++ GANV+ Y++W+ LD+FEW GY +++G+ +VDF
Sbjct: 355 RIRYHSAHLSYLLKAIQKGANVKAYYIWSFLDDFEWDAGYTVRFGVTYVDF 203
>gb|BP932598.1|BP932598 BP932598 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-038_A02.r 3', mRNA sequence
Length = 644
Score = 77.1 bits (162), Expect(2) = 2e-021
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = -2 / -2
Query: 390 EELIDDVRRKNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEWAFGYRLKYGLYHVDF 214
+E + D R YL ++ YLSKA++ GANV+GY+ W D+FEW GY +++G+ ++DF
Sbjct: 487 KEALKDGLRIRYLASHLQYLSKAIKEGANVKGYYQWAFWDDFEWDAGYTVRFGMIYIDF 311
Score = 45.1 bits (92), Expect(2) = 2e-021
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = -2 / -2
Query: 534 IGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDAS 394
IG TAL F P+ I + YV +YK P+YITENG ++AS
Sbjct: 637 IGTPTALNWLFIYPKGIYDLMLYVRDKYKNPPLYITENGLADANNAS 497
>gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 643
Score = 86.8 bits (183), Expect(2) = 6e-021
Identities = 35/95 (36%), Positives = 54/95 (56%)
Frame = -2 / +2
Query: 543 GVKIGGDTALAGFFDVPEAIELAIQYVNGRYKGTPVYITENGYXQWSDASREELIDDVRR 364
GV+IG ++VP + A+ Y+ RY + ++ENG + +R + + D R
Sbjct: 359 GVEIGPRANSYWLYNVPWGMYKAVMYIKERYGNPTMILSENGMDDPGNLTRSKAMQDTTR 538
Query: 363 KNYLQGYITYLSKALRNGANVRGYFVWTLLDNFEW 259
Y + Y++ L KA +GAN+ GYF W+LLDNFEW
Sbjct: 539 IGYYKAYLSQLKKAADDGANMVGYFAWSLLDNFEW 643
Score = 34.1 bits (68), Expect(2) = 6e-021
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2 / +2
Query: 696 EEKALLLRYKADFIGLNHYTAIYARD 619
EE+ +++ DF+G+NHYT Y D
Sbjct: 209 EEEVKMVKGSMDFVGINHYTTYYMYD 286
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 315,130,560
Number of Sequences: 369679
Number of extensions: 3475811
Number of successful extensions: 26233
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10444609700
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)