TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 7987759.3.1
         (658 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CA823897.1|CA823897  R33B03 two-month-old roots from clon...    94   3e-027
gb|DN498369.1|DN498369  S021B06.5pR Populus imbibed seed cDN...    97   3e-025

>gb|CA823897.1|CA823897 R33B03 two-month-old roots from clone 'Beaupre' Populus trichocarpa
           x Populus deltoides cDNA 5', mRNA sequence
          Length = 626

 Score = 93.6 bits (198), Expect(2) = 3e-027
 Identities = 33/79 (41%), Positives = 53/79 (67%)
 Frame = +2 / +3

                                                                       
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
           + +   +WNH F ++ SM+LK A+DLGIPD I++H    T+P+++  + +HPSK  C+ R
Sbjct: 96  ISSSYYVWNHIFNFINSMSLKCAIDLGIPDIINKHSKPVTLPELIAALPVHPSKARCVPR 275

                              
Query: 293 LMRVLTVTGVFGTQEPHDD 349
           LMR+L  +G F  Q+  +D
Sbjct: 276 LMRLLIHSGFFEKQKVSED 332




 Score = 49.6 bits (102), Expect(2) = 3e-027
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3 / +3

                                                         
Query: 516 DPSPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
           DP+PF+  HGR  W+  +H+   +  F+  M +D+  +  V V EC
Sbjct: 480 DPTPFDTAHGRTFWDYGSHEPMLNHXFNDAMASDARXVTRVXVNEC 617



>gb|DN498369.1|DN498369 S021B06.5pR Populus imbibed seed cDNA library Populus tremula cDNA
           clone S021B06 5', mRNA sequence
          Length = 713

 Score = 97.3 bits (206), Expect(2) = 3e-025
 Identities = 37/82 (45%), Positives = 52/82 (63%)
 Frame = +2 / +1

                                                                       
Query: 113 LDAELQLWNHTFGYVKSMALKAALDLGIPDAIHQHGGSATIPQIVTRITLHPSKTPCLRR 292
           L A+  +WNH F ++ SM+LK A+ LGIPD IH HG   T+ ++V  + +HPSK P + R
Sbjct: 100 LQAQAHVWNHIFNFINSMSLKCAIQLGIPDVIHNHGKPMTLSELVAVLPVHPSKAPGVYR 279

                                 
Query: 293 LMRVLTVTGVFGTQEPHDDGGG 358
           LMR+L  +G F TQ    +  G
Sbjct: 280 LMRILVHSGFFATQNDSGETEG 345




 Score = 39.6 bits (80), Expect(2) = 3e-025
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3 / +1

                                                       
Query: 522 SPFNVTHGRDIWELDAHDAGFSRLFDAGMVADSGFIMNVVVREC 653
           SPF   H R  WE   +    +  F+  M +D+  + +V+V EC
Sbjct: 490 SPFCTAHQRTFWEFAGNGTKLNHFFNEAMASDARLVSSVLVNEC 621



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 273,401,990
Number of Sequences: 369679
Number of extensions: 3471800
Number of successful extensions: 41451
Number of sequences better than 1.0e-020: 3
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8174526253
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)