TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX172344.1|CX172344 E04_69-106_10.ab1 leaf inoculated wi... 371 e-102
gb|CX175826.1|CX175826 E09_69-81_09.ab1 leaf inoculated wit... 314 5e-085
gb|CX174107.1|CX174107 H05_69-28_15.ab1 leaf inoculated wit... 308 2e-083
gb|CX186009.1|CX186009 G03_45-53_13.ab1 leaf inoculated wit... 210 2e-058
gb|CX175489.1|CX175489 B02_69-61_04.ab1 leaf inoculated wit... 204 9e-052
gb|AJ771691.1|AJ771691 AJ771691 Populus euphratica root 3-6... 199 2e-050
gb|DT472107.1|DT472107 WS01225.BR.1_C23 PT-GT-FL-A-3 Populu... 194 2e-049
>gb|CX172344.1|CX172344 E04_69-106_10.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 655
Score = 371 bits (805), Expect = e-102
Identities = 148/182 (81%), Positives = 164/182 (90%)
Frame = +3 / +3
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDS++PALL D+NRKFIYVEQAFFQRWWR+Q++
Sbjct: 108 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWRDQSE 287
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQI 362
+++ VK L+ SG+LELINGGMCMHDEAA HYIDMIDQTTLGH++IKEEF PRIGWQI
Sbjct: 288 EVQNVVKQLVISGQLELINGGMCMHDEAAPHYIDMIDQTTLGHQFIKEEFNVTPRIGWQI 467
Query: 363 DPFGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAG 542
DPFGHSAVQAYLLGAEVGFD+F+F RIDYQDR RKG K LEVVWRGSK+LGSSA IF
Sbjct: 468 DPFGHSAVQAYLLGAEVGFDSFFFGRIDYQDRTKRKGDKSLEVVWRGSKSLGSSAQIFCR 647
Query: 543 IF 548
F
Sbjct: 648 AF 653
Score = 204 bits (440), Expect(2) = 2e-053
Identities = 96/140 (68%), Positives = 102/140 (72%)
Frame = -3 / -1
Query: 421 SNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHMP 242
SNPTSAP R*A TAECP GSICQPI G+ NSSLM CP VV*SIMSI*C AASSCMH+P
Sbjct: 526 SNPTSAPNR*ACTAECPKGSICQPILGVTLNSSLMN*CPRVV*SIMSI*CGAASSCMHIP 347
Query: 241 PFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTFCTHAP 62
PFI+SS PE+ S T S LH WK ACST MNF F S +AG ESSTF T AP
Sbjct: 346 PFISSS*PEMTSCLTTFCTSSL*SLHQRWKKACSTYMNFLFLSANNAGTIESSTF*TQAP 167
Query: 61 WMELLDPT*YWSTVLSHPTS 2
MELLDPT*Y STV + PTS
Sbjct: 166 *MELLDPT*Y*STVFNQPTS 107
Score = 145 bits (311), Expect(2) = 4e-035
Identities = 66/156 (42%), Positives = 103/156 (66%)
Frame = -2 / -3
Query: 539 SKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEEIESIESYFCAKKVSLNRRVPKRIN 360
+K + R* + + P NLE +F ++L++N + + ++S C ++VSL+ R+ + IN
Sbjct: 644 AKYLCR*TKAFRSSPDNLETLITFSFCSILIVNSSKEKGVKSNLCPQQVSLHCRMSEGIN 465
Query: 359 LPANPWDLAKLLLDVLVSKCSLIDHVNIVYSRLIVHAHATIY*FQPSRADEPLHCILDHV 180
LP N W K LD L+ + LI+HVNI++S LI+HAH +IY* + +R D+ L IL +
Sbjct: 464 LPTNSWSHIKFFLDELMPQSCLINHVNIMWSCLIMHAHTSIY*LKLTRDDKLLDYILYFL 285
Query: 179 ILVPPPSLEECLLNIDELSVLVLEKRRDERIQHVLH 72
L+ PP+LEE LLNI ELS+L+ ++ R RIQH+L+
Sbjct: 284 ALISPPTLEEGLLNIYELSILIGQQCRHYRIQHILN 177
Score = 25.4 bits (49), Expect(2) = 2e-053
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / -1
Query: 532 ISADEPKVLEPLHTT 488
I ADEP++L+P TT
Sbjct: 637 ICADEPRLLDPRQTT 593
Score = 23.1 bits (44), Expect(2) = 4e-035
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1 / -2
Query: 90 NPARSARMPPGWSCWIRRSTGLRS 19
NPA P W+C + ST +S
Sbjct: 195 NPAHFEHKHPEWNC*TQHSTDQQS 124
>gb|CX175826.1|CX175826 E09_69-81_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 570
Score = 314 bits (680), Expect = 5e-085
Identities = 123/148 (83%), Positives = 138/148 (93%)
Frame = +3 / +3
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDS++PALL D+NRKFIYVEQAFFQRWWR+Q++
Sbjct: 126 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWRDQSE 305
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQI 362
+++ VK L+ SG+LELINGGMCMHDEAA HYIDMIDQTTLGH++IKEEF PRIGWQI
Sbjct: 306 EVQNVVKQLVISGQLELINGGMCMHDEAAPHYIDMIDQTTLGHQFIKEEFNVTPRIGWQI 485
Query: 363 DPFGHSAVQAYLLGAEVGFDAFYFFRID 446
DPFGHSAVQAYLLGAEVGFD+F+F RID
Sbjct: 486 DPFGHSAVQAYLLGAEVGFDSFFFGRID 569
Score = 204 bits (440), Expect = 6e-052
Identities = 96/140 (68%), Positives = 102/140 (72%)
Frame = -3 / -3
Query: 421 SNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHMP 242
SNPTSAP R*A TAECP GSICQPI G+ NSSLM CP VV*SIMSI*C AASSCMH+P
Sbjct: 544 SNPTSAPNR*ACTAECPKGSICQPILGVTLNSSLMN*CPRVV*SIMSI*CGAASSCMHIP 365
Query: 241 PFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTFCTHAP 62
PFI+SS PE+ S T S LH WK ACST MNF F S +AG ESSTF T AP
Sbjct: 364 PFISSS*PEMTSCLTTFCTSSL*SLHQRWKKACSTYMNFLFLSANNAGTIESSTF*TQAP 185
Query: 61 WMELLDPT*YWSTVLSHPTS 2
MELLDPT*Y STV + PTS
Sbjct: 184 *MELLDPT*Y*STVFNQPTS 125
Score = 127 bits (272), Expect(2) = 9e-030
Identities = 57/125 (45%), Positives = 86/125 (68%)
Frame = -2 / -2
Query: 446 INPEEIESIESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNIVYS 267
+N + + ++S C ++VSL+ R+ + INLP N W K LD L+ + LI+HVNI++S
Sbjct: 569 VNSSKEKGVKSNLCPQQVSLHCRMSEGINLPTNSWSHIKFFLDELMPQSCLINHVNIMWS 390
Query: 266 RLIVHAHATIY*FQPSRADEPLHCILDHVILVPPPSLEECLLNIDELSVLVLEKRRDERI 87
LI+HAH +IY* + +R D+ L IL + L+ PP+LEE LLNI ELS+L+ ++ R RI
Sbjct: 389 CLIMHAHTSIY*LKLTRDDKLLDYILYFLALISPPTLEEGLLNIYELSILIGQQCRHYRI 210
Query: 86 QHVLH 72
QH+L+
Sbjct: 209 QHILN 195
Score = 23.1 bits (44), Expect(2) = 9e-030
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1 / -1
Query: 90 NPARSARMPPGWSCWIRRSTGLRS 19
NPA P W+C + ST +S
Sbjct: 213 NPAHFEHKHPEWNC*TQHSTDQQS 142
>gb|CX174107.1|CX174107 H05_69-28_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 621
Score = 308 bits (668), Expect = 2e-083
Identities = 120/144 (83%), Positives = 135/144 (93%)
Frame = +3 / +3
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDS++PALL D+NRKFIYVEQAFFQRWWR+Q++
Sbjct: 189 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSIVPALLADKNRKFIYVEQAFFQRWWRDQSE 368
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQI 362
+++ VK L+ SG+LELINGGMCMHDEAA HYIDMIDQTTLGH++IKEEF PRIGWQI
Sbjct: 369 EVQNVVKQLVISGQLELINGGMCMHDEAAPHYIDMIDQTTLGHQFIKEEFNVTPRIGWQI 548
Query: 363 DPFGHSAVQAYLLGAEVGFDAFYF 434
DPFGHSAVQAYLLGAEVGFD+F+F
Sbjct: 549 DPFGHSAVQAYLLGAEVGFDSFFF 620
Score = 204 bits (440), Expect = 6e-052
Identities = 96/140 (68%), Positives = 102/140 (72%)
Frame = -3 / -3
Query: 421 SNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAASSCMHMP 242
SNPTSAP R*A TAECP GSICQPI G+ NSSLM CP VV*SIMSI*C AASSCMH+P
Sbjct: 607 SNPTSAPNR*ACTAECPKGSICQPILGVTLNSSLMN*CPRVV*SIMSI*CGAASSCMHIP 428
Query: 241 PFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSSLRSAGMSESSTFCTHAP 62
PFI+SS PE+ S T S LH WK ACST MNF F S +AG ESSTF T AP
Sbjct: 427 PFISSS*PEMTSCLTTFCTSSL*SLHQRWKKACSTYMNFLFLSANNAGTIESSTF*TQAP 248
Query: 61 WMELLDPT*YWSTVLSHPTS 2
MELLDPT*Y STV + PTS
Sbjct: 247 *MELLDPT*Y*STVFNQPTS 188
Score = 124 bits (266), Expect(2) = 6e-029
Identities = 56/119 (47%), Positives = 83/119 (69%)
Frame = -2 / -2
Query: 428 ESIESYFCAKKVSLNRRVPKRINLPANPWDLAKLLLDVLVSKCSLIDHVNIVYSRLIVHA 249
+ ++S C ++VSL+ R+ + INLP N W K LD L+ + LI+HVNI++S LI+HA
Sbjct: 614 KGVKSNLCPQQVSLHCRMSEGINLPTNSWSHIKFFLDELMPQSCLINHVNIMWSCLIMHA 435
Query: 248 HATIY*FQPSRADEPLHCILDHVILVPPPSLEECLLNIDELSVLVLEKRRDERIQHVLH 72
H +IY* + +R D+ L IL + L+ PP+LEE LLNI ELS+L+ ++ R RIQH+L+
Sbjct: 434 HTSIY*LKLTRDDKLLDYILYFLALISPPTLEEGLLNIYELSILIGQQCRHYRIQHILN 258
Score = 23.1 bits (44), Expect(2) = 6e-029
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -1 / -1
Query: 90 NPARSARMPPGWSCWIRRSTGLRS 19
NPA P W+C + ST +S
Sbjct: 276 NPAHFEHKHPEWNC*TQHSTDQQS 205
>gb|CX186009.1|CX186009 G03_45-53_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 541
Score = 210 bits (453), Expect(2) = 2e-058
Identities = 82/121 (67%), Positives = 99/121 (81%)
Frame = +3 / +1
Query: 258 DEAAVHYIDMIDQTTLGHKYIKEEFGQIPRIGWQIDPFGHSAVQAYLLGAEVGFDAFYFF 437
DEA HYID+IDQTTLGHKYIK+EFGQ+PR+GWQIDPFGHSAVQAYLLGAE+GFD+ +F
Sbjct: 1 DEATPHYIDLIDQTTLGHKYIKDEFGQLPRVGWQIDPFGHSAVQAYLLGAELGFDSLFFA 180
Query: 438 RIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIFPKNYEPPPGDFYFEVDDNSPVVQ 617
RIDYQDR R K LEVVW+GSK+LGS++ IF GIFP++Y+PP G + D + P+
Sbjct: 181 RIDYQDRAKRLKEKNLEVVWQGSKSLGSTSQIFTGIFPRHYDPPDGFTFEINDVSPPIQD 360
Query: 618 D 620
D
Sbjct: 361 D 363
Score = 148 bits (318), Expect(2) = 6e-043
Identities = 58/78 (74%), Positives = 66/78 (84%)
Frame = +3 / +1
Query: 567 PPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKY 746
PP F FE++D SP +QDD LLFDYNV+ERVN FVAAA+AQAN+TRTNHIM+ MGTDF+Y
Sbjct: 307 PPDGFTFEINDVSPPIQDDVLLFDYNVQERVNAFVAAALAQANVTRTNHIMWLMGTDFRY 486
Query: 747 QYAESWFGNMDKLIHYVN 800
QYA SWF MDK IHYVN
Sbjct: 487 QYANSWFRQMDKFIHYVN 540
Score = 86.8 bits (183), Expect(3) = 9e-036
Identities = 40/54 (74%), Positives = 42/54 (77%)
Frame = -3 / -3
Query: 421 SNPTSAPRR*A*TAECPNGSICQPIRGIWPNSSLMYLCPSVV*SIMSI*CTAAS 260
SNP SAP +*A*TAECP GSICQP G PNSSL+YL P VV*SI SI*C AS
Sbjct: 164 SNPNSAPSK*A*TAECPKGSICQPTLGS*PNSSLIYLWPKVV*SIKSI*CGVAS 3
Score = 79.4 bits (167), Expect(3) = 9e-036
Identities = 35/78 (44%), Positives = 50/78 (64%)
Frame = -2 / -2
Query: 800 VHIVN*FVHISEPTLCVLVFEVCSHCKHDMICPRDICLCYSCSNKIIYSFFNIIIEKKGI 621
+HI+N VH+ EP +C+L+ ++ H H MICP I L S SNK I N+I++++ I
Sbjct: 540 IHIMNELVHLPEP*ICILIAKIRPHQPHYMICPGYISLS*SSSNKGIDPLLNVIVKQENI 361
Query: 620 ILDNRGIIINFKIKITRR 567
IL+ RG II FK + RR
Sbjct: 360 ILNRRGHIIYFKCESIRR 307
Score = 74.4 bits (156), Expect(2) = 1e-025
Identities = 36/97 (37%), Positives = 54/97 (55%)
Frame = -2 / -2
Query: 548 KDASKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEEIESIESYFCAKKVSLNRRVPK 369
K K + * +GLG P NL+ +VLVI+ + + +ES K++ LN R+ K
Sbjct: 291 KYTGKYL*S*TKGLGTLPDNLKILLLQSLSSVLVIDSSKKKRVES*LSTKQIGLNSRMSK 112
Query: 368 RINLPANPWDLAKLLLDVLVSKCSLIDHVNIVYSRLI 258
R+NLP N W L K + D+ V+ LI+ +NI+ LI
Sbjct: 111 RVNLPTNSWKLTKFIFDIFVA*SCLINQINIMRGCLI 1
Score = 62.5 bits (130), Expect(2) = 1e-025
Identities = 39/66 (59%), Positives = 45/66 (68%)
Frame = -3 / -3
Query: 799 FT**ISLSIFPNQLSAYWYLKSVPIVNMI*FVLVIFACATAAATKSFTRSSTL*SKRRGS 620
FT**++LSI N AY KSVPI ++I*FVLV A A AAATK+ T S TL*S RR S
Sbjct: 539 FT**MNLSICLNHEFAY**RKSVPISHII*FVLVTLA*AKAAATKALTLS*TL*SNRRTS 360
Query: 619 SWTTGE 602
S G+
Sbjct: 359 S*IGGD 342
Score = 48.3 bits (99), Expect(2) = 6e-043
Identities = 24/54 (44%), Positives = 28/54 (51%)
Frame = +2 / +3
Query: 260 *GGCTLY*HDRSDYTWTQVHQGGVWPDPTDWLAD*SVWALCGSGLPSWRRSRIR 421
*G LY* D SD Q++Q +W WLAD* W C S L +W RIR
Sbjct: 3 *GNPALY*FD*SDNFRPQIYQR*IWSASKSWLAD*PFWTFCCSSLFAWC*VRIR 164
Score = 35.9 bits (72), Expect(2) = 2e-058
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2 / +3
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCE 799
+G ++DKSY+V +G+ + + + +V+ GQ +SLCE
Sbjct: 426 SG*CNQDKSYNVADGDGFSLSVCKFMVQADGQVHSLCE 539
Score = 22.6 bits (43), Expect(3) = 9e-036
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / -3
Query: 544 MPAKISADEPKVLEPLHTT 488
+P I EP+ LEP TT
Sbjct: 287 IPVNICEVEPRDLEPCQTT 231
>gb|CX175489.1|CX175489 B02_69-61_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 473
Score = 204 bits (439), Expect = 9e-052
Identities = 80/96 (83%), Positives = 88/96 (91%)
Frame = +3 / +1
Query: 3 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLKDENRKFIYVEQAFFQRWWRNQND 182
DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALL D+NRKFIYVEQAFFQRWWR+Q++
Sbjct: 184 DVGWLKTVDQYYVGSNNSIQGACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWRDQSE 363
Query: 183 MIKDTVKGLISSGRLELINGGMCMHDEAAVHYIDMI 290
++ VK L+SSG+LE INGGMCMHDEA HYIDMI
Sbjct: 364 TMQHVVKQLVSSGQLEFINGGMCMHDEAVTHYIDMI 471
Score = 157 bits (338), Expect = 8e-038
Identities = 67/97 (69%), Positives = 75/97 (77%)
Frame = -3 / -1
Query: 292 SIMSI*CTAASSCMHMPPFINSSRPELMSPFTVSLIMSFWFLHHLWKNACST*MNFRFSS 113
SIMSI*C ASSCMH+PPF+NSS PEL S T I+S LHH WK ACST*MNFRF S
Sbjct: 473 SIMSI*CVTASSCMHIPPFMNSS*PELTSCLTTCCIVSL*SLHHRWKKACST*MNFRFLS 294
Query: 112 LRSAGMSESSTFCTHAPWMELLDPT*YWSTVLSHPTS 2
SAG+ ES+TFCT APW+ELL+PT*Y STV + PTS
Sbjct: 293 ANSAGIRESNTFCTQAPWIELLEPT*Y*STVFNQPTS 183
>gb|AJ771691.1|AJ771691 AJ771691 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600004E01F1, mRNA sequence
Length = 664
Score = 199 bits (429), Expect = 2e-050
Identities = 78/107 (72%), Positives = 93/107 (86%)
Frame = +3 / +3
Query: 567 PPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKY 746
PP F FE++D SP +QDD LLFDYNV+ERVN FVAAA+AQAN+TRTNHIM+ MGTDF+Y
Sbjct: 219 PPDGFTFEINDVSPPIQDDVLLFDYNVQERVNAFVAAALAQANVTRTNHIMWLMGTDFRY 398
Query: 747 QYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQGPLQ 887
QYA SWF MDK IHYVN+DGR++ALYSTPSIYTD K+AA+E+ PL+
Sbjct: 399 QYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDLKHAADEEWPLK 539
Score = 111 bits (238), Expect(2) = 4e-027
Identities = 51/106 (48%), Positives = 69/106 (65%)
Frame = -2 / -3
Query: 884 ERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMIC 705
ERP IC +F IGING I S+D IL+HI+N VH+ EP +C+L+ ++ H H MIC
Sbjct: 536 ERPFFICCMFQIGINGWG*I*SIDPTILIHIMNELVHLPEP*ICILIAKIRPHQPHYMIC 357
Query: 704 PRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKITRR 567
P I L S SNK I S N+I++++ I+L+ RG II FK + RR
Sbjct: 356 PGYISLS*SSSNKGIDSLLNVIVKQENIVLNRRGHIIYFKCESIRR 219
Score = 105 bits (225), Expect(2) = 7e-037
Identities = 42/78 (53%), Positives = 56/78 (71%)
Frame = +3 / +3
Query: 387 QAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADIFAGIFPKNYEP 566
QA+ GAE+GFD+ +F RIDYQDR R K LEVVW+GSK+LGS++ IF GIFP++Y+P
Sbjct: 42 QAFFFGAELGFDSLFFARIDYQDRAKRLKEKNLEVVWQGSKSLGSTSQIFTGIFPRHYDP 221
Query: 567 PPGDFYFEVDDNSPVVQD 620
P G + D + P+ D
Sbjct: 222 PDGFTFEINDVSPPIQDD 275
Score = 68.4 bits (143), Expect(2) = 7e-037
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +2 / +2
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
+G ++DKSY+V +G+ + + + +V+ GQ +SLCE GW CS+F+ HLYR + C
Sbjct: 338 SG*CNQDKSYNVVDGDGFSLSVCKFMVQADGQVHSLCESGWSGQCSIFNPIHLYRFETCS 517
Query: 866 K*AGAS 883
+* AS
Sbjct: 518 R*RMAS 535
Score = 29.9 bits (59), Expect(2) = 4e-027
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = -2 / -3
Query: 548 KDASKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEEIESIESYFCAKKVSL 387
K K + * +GLG P NL+ +VLVI+ + + +ES KK SL
Sbjct: 203 KYTGKYL*S*TKGLGTLPDNLKILLLQSLSSVLVIDSSKKKRVES*LSTKKKSL 42
>gb|DT472107.1|DT472107 WS01225.BR.1_C23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_C23 5', mRNA sequence
Length = 908
Score = 194 bits (419), Expect(2) = 2e-049
Identities = 76/103 (73%), Positives = 90/103 (87%)
Frame = +3 / +1
Query: 567 PPGDFYFEVDDNSPVVQDDPLLFDYNVEERVNDFVAAAVAQANITRTNHIMFTMGTDFKY 746
PP F FE++D SP +QDD LLFDYNV+ERVN FVAAA+AQAN+TRTNHIM+ MGTDF+Y
Sbjct: 211 PPDGFTFEINDVSPPIQDDVLLFDYNVQERVNAFVAAALAQANVTRTNHIMWLMGTDFRY 390
Query: 747 QYAESWFGNMDKLIHYVNKDGRIHALYSTPSIYTDAKYAANEQ 875
QYA SWF MDK IHYVN+DGR++ALYSTPSIYTD K+AA+E+
Sbjct: 391 QYANSWFRQMDKFIHYVNQDGRVNALYSTPSIYTDLKHAADEE 519
Score = 141 bits (302), Expect(2) = 3e-047
Identities = 56/89 (62%), Positives = 69/89 (77%)
Frame = +3 / +1
Query: 354 WQIDPFGHSAVQAYLLGAEVGFDAFYFFRIDYQDRDTRKGTKELEVVWRGSKTLGSSADI 533
WQIDPFGHSAVQAYLLGAE+GFD+ +F RIDYQDR R K LEVVW+GSK+LGS++ I
Sbjct: 1 WQIDPFGHSAVQAYLLGAELGFDSLFFARIDYQDRAKRLKEKNLEVVWQGSKSLGSTSQI 180
Query: 534 FAGIFPKNYEPPPGDFYFEVDDNSPVVQD 620
F GIFP++Y+PP G + D + P+ D
Sbjct: 181 FTGIFPRHYDPPDGFTFEINDVSPPIQDD 267
Score = 106 bits (226), Expect(2) = 2e-030
Identities = 49/106 (46%), Positives = 68/106 (64%)
Frame = -2 / -3
Query: 884 ERPLLICSIFCIGINGRCGIKSMDTAILVHIVN*FVHISEPTLCVLVFEVCSHCKHDMIC 705
E+P IC +F IGING I S+ IL+HI+N VH+ EP +C+L+ ++ H H MIC
Sbjct: 528 EKPFFICCMFQIGINGWG*I*SIYPTILIHIMNELVHLPEP*ICILIAKIRPHQPHYMIC 349
Query: 704 PRDICLCYSCSNKIIYSFFNIIIEKKGIILDNRGIIINFKIKITRR 567
P I L S SNK I S N+I++++ I+L+ RG II FK + RR
Sbjct: 348 PGYISLS*SSSNKGIDSLLNVIVKQENIVLNRRGHIIYFKCESIRR 211
Score = 91.3 bits (193), Expect(3) = 5e-027
Identities = 56/94 (59%), Positives = 64/94 (68%)
Frame = -3 / -1
Query: 883 RGPCSFAAYFASV*MEGVE*RAWIRPSLFT**ISLSIFPNQLSAYWYLKSVPIVNMI*FV 704
R S AA F SV*M+GVE RA+ RPS FT**++LSI N AY KSVPI ++I*FV
Sbjct: 527 RSHSSSAACFKSV*MDGVEYRAFTRPS*FT**MNLSICLNHEFAY**RKSVPISHII*FV 348
Query: 703 LVIFACATAAATKSFTRSSTL*SKRRGSSWTTGE 602
LV A A AAATK+ T S TL*S RR SS G+
Sbjct: 347 LVTLA*AKAAATKALTLS*TL*SNRRTSS*IGGD 246
Score = 68.0 bits (142), Expect(2) = 3e-047
Identities = 27/66 (40%), Positives = 43/66 (65%)
Frame = +2 / +3
Query: 686 TGKYHEDKSYHVYNGNRLQIPIRRELVRKYGQTNSLCEQGWPYPCSLFHTFHLYRCKICC 865
+G ++DKSY+V +G+ + + + +V+ GQ +SLCE GW CS+F+ HLYR + C
Sbjct: 330 SG*CNQDKSYNVADGDGFSLSVCKFMVQADGQVHSLCESGWSGKCSIFNPIHLYRFETCS 509
Query: 866 K*AGAS 883
+* AS
Sbjct: 510 R*RMAS 527
Score = 46.4 bits (95), Expect(2) = 2e-030
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = -2 / -3
Query: 548 KDASKDISR*AQGLGAPPYNLEFFCSFPCITVLVINPEEIESIESYFCAKKVSLNRRVPK 369
K K + * +GLG P NL+ ++LVI+ + + +ES K++ LN R+ K
Sbjct: 195 KYTGKYL*S*TKGLGTLPDNLKILLLQSLSSILVIDSSKKKRVES*LSTKQIGLNSRMSK 16
Query: 368 RINLP 354
R+NLP
Sbjct: 15 RVNLP 1
Score = 45.1 bits (92), Expect(3) = 5e-027
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = -3 / -1
Query: 421 SNPTSAPRR*A*TAECPNGSIC 356
SNP SAP +*A*TAECP GSIC
Sbjct: 68 SNPNSAPSK*A*TAECPKGSIC 3
Score = 24.4 bits (47), Expect(2) = 2e-049
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2 / +3
Query: 356 AD*SVWALCGSGLPSWRRSRIR 421
AD* W C S L +W RIR
Sbjct: 3 AD*PFWTFCCSSLFAWC*VRIR 68
Score = 22.6 bits (43), Expect(3) = 5e-027
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3 / -1
Query: 544 MPAKISADEPKVLEPLHTT 488
+P I EP+ LEP TT
Sbjct: 191 IPVNICEVEPRDLEPCQTT 135
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 483,018,649
Number of Sequences: 369679
Number of extensions: 7356649
Number of successful extensions: 57328
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11804837940
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)