TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5532690.2.1
(863 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU813083.1|BU813083 N005A07 Populus bark cDNA library Po... 131 3e-053
gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Popul... 82 6e-047
gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal libra... 75 3e-040
gb|DN501399.1|DN501399 UM93TE04.5pR Populus female catkins ... 85 4e-039
gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Popul... 69 3e-038
gb|CN550252.1|CN550252 GQ0242.B3_O16 GQ024 Populus trichoca... 81 5e-038
gb|CK099366.1|CK099366 A064P56.5pR Hybrid aspen plasmid lib... 148 1e-036
gb|CF234038.1|CF234038 PtaJXO1G9G0913 Poplar cDNA library f... 80 2e-035
gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Popul... 69 3e-035
gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Po... 66 2e-034
gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Po... 65 1e-033
gb|CB240505.1|CB240505 PopSC00531 Poplar SC cDNA library Po... 82 2e-033
gb|BU883581.1|BU883581 UM93TE04 Populus flower cDNA library... 85 5e-031
gb|AJ776591.1|AJ776591 AJ776591 Populus euphratica root 3-6... 85 7e-030
gb|DT501879.1|DT501879 WS01314.BR_I22 PTxD-IL-FL-A-4 Populu... 85 9e-030
gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus t... 65 4e-029
gb|CN523319.1|CN523319 GQ015M01.B3_L17 GQ015 Populus tricho... 82 8e-029
gb|CV227865.1|CV227865 WS0168.B21_G24 PT-DX-A-7 Populus tri... 60 2e-027
gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA libra... 60 1e-026
gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Popu... 65 2e-026
gb|AI164515.1|AI164515 A064P56U Hybrid aspen plasmid librar... 119 3e-026
gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus... 58 2e-025
gb|CX169718.1|CX169718 H05_69-21_15.ab1 leaf inoculated wit... 100 4e-025
gb|CV265944.1|CV265944 WS02028.B21_L02 PTxN-IB-N-A-11 Popul... 60 8e-024
>gb|BU813083.1|BU813083 N005A07 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 720
Score = 131 bits (280), Expect(2) = 3e-053
Identities = 47/72 (65%), Positives = 55/72 (76%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
D I SILW GYPGE G L EI+FG++NPGG+LP+TWYP+ F +PMTDM MR + S
Sbjct: 10 DKNIGSILWAGYPGEGGAIALAEIMFGDHNPGGRLPVTWYPQEFVKVPMTDMGMRPEASS 189
Query: 683 GYPGRTYRFYTG 648
GYPGRTYRFY G
Sbjct: 190 GYPGRTYRFYKG 225
Score = 100 bits (213), Expect(2) = 3e-053
Identities = 43/102 (42%), Positives = 58/102 (56%)
Frame = -1 / +1
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE + V NHG M G H VLLFAR + G P KQL+GF+ V AG + +E
Sbjct: 394 CEQNKCRARIGVKNHGDMAGKHPVLLFARQEKHGNGRPRKQLIGFQSVVLGAGERAEIEF 573
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
V PC+H+S AN +G V+ G H L V +E+ +S+ +* G
Sbjct: 574 EVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEYPISVVI*YG 699
Score = 93.2 bits (197), Expect(2) = 2e-028
Identities = 43/83 (51%), Positives = 50/83 (60%)
Frame = +1 / -2
Query: 601 EYLE*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGLY 780
EY E*L P P T P+*N YV PG*P E S + +SV+G GYQV G+ PPGL
Sbjct: 272 EYFE*LMP*PNSKTLRPL*NLYVRPG*PEEASGRIPMSVIGTFTNSCGYQVTGNLPPGL* 93
Query: 781 SPKRISGRTCPPTSPGYPSQRML 849
SP IS R P SPG P+ +ML
Sbjct: 92 SPNMISARAMAPPSPG*PAHKML 24
Score = 55.1 bits (114), Expect(2) = 2e-028
Identities = 33/91 (36%), Positives = 40/91 (43%)
Frame = +1 / -2
Query: 178 PCQXXXXXXXXXXPTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPT 357
P Q T + P+ T+ PS LA L C QG T S PA T P
Sbjct: 698 PYQITTEIGYSSPSTTKKCLPSSITIRPSSLALLRCSQGLTSNSISALSPAPNTTLWNPI 519
Query: 358 SCFIGKPGTLDFDLANRRTA*LPSMLP*FET 450
SCF+G P LAN +T LP++ P F T
Sbjct: 518 SCFLGLPFPCFSCLANSKTGCLPAISPWFFT 426
>gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 5', mRNA sequence
Length = 783
Score = 81.7 bits (172), Expect(4) = 6e-047
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+I SILW+GYPGE GG + +I+FG YNP G+LP+TWYP+S+
Sbjct: 101 KITSILWVGYPGEAGGAAIADIIFGSYNPSGRLPMTWYPQSY 226
Score = 67.0 bits (140), Expect(4) = 6e-047
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+MNMR DPS GYPGRTYRFYTG+ V + AP ++V L
Sbjct: 236 VPMTNMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAPGLVSVPL 403
Score = 56.5 bits (117), Expect(4) = 6e-047
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = -1 / +2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + LG HVL +G +
Sbjct: 557 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLK 736
Query: 206 FELSIEL*QGCAKS 165
+++ +* KS
Sbjct: 737 HSMTVRI*NKTFKS 778
Score = 56.5 bits (117), Expect(3) = 1e-023
Identities = 24/44 (54%), Positives = 28/44 (63%)
Frame = +1 / -1
Query: 724 IAVKDSGYQVIGSFPPGLYSPKRISGRTCPPTSPGYPSQRMLAI 855
++ D GYQVIGS P GL PK IS PP SPG P+ R+L I
Sbjct: 234 LSTYDCGYQVIGSLPLGL*EPKIISAMAAPPASPG*PTHRILVI 103
Score = 52.4 bits (108), Expect(3) = 1e-023
Identities = 26/38 (68%), Positives = 27/38 (71%)
Frame = +1 / -1
Query: 610 E*LKPYPKPYTTSPV*NRYVLPG*PREGSALMFISVMG 723
E*L P P T SPV*N VLPG*P EGS LMFI V+G
Sbjct: 351 E*LSPSPNE*TVSPV*NL*VLPG*PLEGSGLMFIFVIG 238
Score = 42.3 bits (86), Expect(3) = 1e-023
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = +1 / -1
Query: 217 PTVRTWAPNRSTLLPSGLAALICLQGSTVISTLDALPAAVWTRSKPTSCFIGK 375
P RT +P + LLPS L LQ ST+ T ++ A T SKPT CF G+
Sbjct: 726 PI*RTCSPKATFLLPSSSTTLKSLQTSTLNPTWLSVCACRKTFSKPTKCFCGE 568
Score = 39.1 bits (79), Expect(4) = 6e-047
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+ GSH V LF+ S
Sbjct: 461 TCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 559
>gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 75.3 bits (158), Expect(4) = 3e-040
Identities = 25/42 (59%), Positives = 34/42 (80%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+I SIL +GYPGE GG + +I+FG YNP G+LP+TWYP+S+
Sbjct: 44 KITSILRVGYPGEAGGAAIADIIFGSYNPSGRLPMTWYPQSY 169
Score = 67.0 bits (140), Expect(4) = 3e-040
Identities = 27/56 (48%), Positives = 33/56 (58%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+MNMR DPS GYPGRTYRFYTG+ V + AP ++V L
Sbjct: 179 VPMTNMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAPGLVSVPL 346
Score = 41.8 bits (85), Expect(4) = 3e-040
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+M GSH V LF+ S
Sbjct: 404 TCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 502
Score = 37.3 bits (75), Expect(4) = 3e-040
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1 / +2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEG 258
SV P K LVGFE+V A + S V VD CK +S + G
Sbjct: 500 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELG 628
>gb|DN501399.1|DN501399 UM93TE04.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM93TE04 5', mRNA sequence
Length = 692
Score = 85.4 bits (180), Expect(3) = 4e-039
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
DPRI +ILW+GYPG+ GG + ++LFG NPGGKLP+TWYP ++ A
Sbjct: 151 DPRIGAILWVGYPGQAGGAAIADVLFGTANPGGKLPMTWYPHNYLA 288
Score = 69.3 bits (145), Expect(3) = 4e-039
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = -1 / +1
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+M MRADPSRGYPGRTYRFY G VV AP++++V L
Sbjct: 292 VPMTNMGMRADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVSVPL 459
Score = 45.5 bits (93), Expect(3) = 4e-039
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1 / +1
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFA 399
A+CEAL VH+ V N G MDG+H +L+F+
Sbjct: 520 ANCEALALGVHIDVKNTGDMDGTHTLLVFS 609
>gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_F04 3', mRNA sequence
Length = 941
Score = 69.3 bits (145), Expect(4) = 3e-038
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = -1 / -3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+M MRADPSRGYPGRTYRFY G VV AP++++V L
Sbjct: 855 VPMTNMGMRADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVSVPL 688
Score = 60.2 bits (125), Expect(4) = 3e-038
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = -1 / -3
Query: 365 KQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
KQL+GFE+VH GS V+I + CKH+S + G R + +G H L +GD + +S++
Sbjct: 507 KQLIGFEKVHLVTGSQKRVKIDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKHSISLQ 331
Score = 45.5 bits (93), Expect(4) = 3e-038
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1 / -3
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFA 399
A+CEAL VH+ V N G MDG+H +L+F+
Sbjct: 627 ANCEALALGVHIDVKNTGDMDGTHTLLVFS 538
Score = 39.6 bits (80), Expect(4) = 3e-038
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1 / -3
Query: 803 LPEILFGEYNPGGKLPITWYPESFTA 726
+ ++LFG GGKLP+TWYP + A
Sbjct: 936 IADVLFGTAIQGGKLPMTWYPHDYLA 859
>gb|CN550252.1|CN550252 GQ0242.B3_O16 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_O16 5', mRNA sequence
Length = 668
Score = 81.3 bits (171), Expect(4) = 5e-038
Identities = 26/44 (59%), Positives = 35/44 (79%)
Frame = -1 / +2
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
DP+I SI+W GYPG+ GG + ++LFG NPGGKLP+TWYP+ +
Sbjct: 65 DPKIGSIVWAGYPGQAGGAAIADVLFGITNPGGKLPMTWYPQDY 196
Score = 57.9 bits (120), Expect(4) = 5e-038
Identities = 25/58 (43%), Positives = 32/58 (55%)
Frame = -1 / +2
Query: 731 TAIPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
T +PMT+M MR+ S+GYPGRTYRFY G VV + AP ++V L
Sbjct: 200 TNLPMTNMAMRSSKSKGYPGRTYRFYKGKVVYPFGHGISYTNFAHTIASAPTMVSVPL 373
Score = 38.2 bits (77), Expect(4) = 5e-038
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1 / +2
Query: 371 PIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEG 258
P KQLV FE+VH AAG+ + CK + G
Sbjct: 551 PHKQLVAFEKVHVAAGTXXXXXXNIHVCKSLXXXXXSG 664
Score = 36.8 bits (74), Expect(4) = 5e-038
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1 / +2
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFAR 396
A C L + V V N GSMDG+H +L+++R
Sbjct: 437 ARCNRLSLGMQVDVKNIGSMDGTHTLLVYSR 529
>gb|CK099366.1|CK099366 A064P56.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A064P56 5', mRNA sequence
Length = 523
Score = 148 bits (318), Expect(2) = 1e-036
Identities = 54/68 (79%), Positives = 61/68 (89%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMRADPSR 684
DPRIASILW+GYPGE G + L EI+FGEYNPGG+LP+TWYPESFT + MTDMNMR +PSR
Sbjct: 180 DPRIASILWIGYPGEAGAKALAEIIFGEYNPGGRLPMTWYPESFTEVSMTDMNMRPNPSR 359
Query: 683 GYPGRTYR 660
GYPGRTYR
Sbjct: 360 GYPGRTYR 383
Score = 103 bits (220), Expect(2) = 4e-026
Identities = 45/68 (66%), Positives = 49/68 (72%)
Frame = +1 / -1
Query: 658 NRYVLPG*PREGSALMFISVMGIAVKDSGYQVIGSFPPGLYSPKRISGRTCPPTSPGYPS 837
+R V PG PREG LMFISV+ +V DSGY VIG+ PPGLYSPK IS P SPGYP
Sbjct: 385 HR*VRPGYPREGLGLMFISVIDTSVNDSGYHVIGNLPPGLYSPKMISASAFAPASPGYPI 206
Query: 838 QRMLAIRG 861
QRMLAI G
Sbjct: 205 QRMLAILG 182
Score = 34.5 bits (69), Expect(2) = 4e-026
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = +1 / -3
Query: 580 GAKEMLYEYLE*LKPYPKPYTTSPV* 657
GA ++LY L *LKP P PYT PV*
Sbjct: 464 GADKILYVKLV*LKPPPNPYTRFPV* 387
Score = 24.9 bits (48), Expect(2) = 1e-036
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3 / +3
Query: 678 PWENISILHWRCSVWLWIWFKLLQIFI*HLLGSEE 574
P LHW+ S+W+ KL I L+ +E+
Sbjct: 366 PGRTYRCLHWKPSIWIRWRLKLH*FHIQDLVSTEQ 470
>gb|CF234038.1|CF234038 PtaJXO1G9G0913 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 754
Score = 80.3 bits (169), Expect(4) = 2e-035
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
DP+I I+W GYPG+ GG + ++LFG NPGGKLP+TWYP+ +
Sbjct: 147 DPKIGGIVWAGYPGQAGGAAISDVLFGTTNPGGKLPMTWYPQDY 278
Score = 56.1 bits (116), Expect(4) = 2e-035
Identities = 25/58 (43%), Positives = 30/58 (51%)
Frame = -1 / +3
Query: 731 TAIPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
T +PMT+M MR S GYPGRTYRFY G VV + AP ++V L
Sbjct: 282 TNLPMTNMAMRPSKSNGYPGRTYRFYKGKVVYPFGLGISYTSFVHSIASAPTMVSVPL 455
Score = 40.0 bits (81), Expect(4) = 2e-035
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1 / +3
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFAR 396
A C L F V V V N GSMDG+H +L++++
Sbjct: 519 ARCNRLSFGVQVDVKNTGSMDGTHTLLVYSK 611
Score = 29.0 bits (57), Expect(4) = 2e-035
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1 / +3
Query: 371 PIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEG 258
P+KQLV F + ++ V I V CK +S + G
Sbjct: 633 PLKQLVAFXKNACCCRDSAXVGINVHVCKFLSVGDSFG 746
>gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_I22 3', mRNA sequence
Length = 875
Score = 69.3 bits (145), Expect(4) = 3e-035
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = -1 / -3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+M MRADPSRGYPGRTYRFY G VV AP++++V L
Sbjct: 828 VPMTNMGMRADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVSVPL 661
Score = 59.7 bits (124), Expect(4) = 3e-035
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = -1 / -3
Query: 365 KQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
KQL+GFE+VH GS V+I + CKH+S + G R + G H L +GD + +S++
Sbjct: 480 KQLIGFEKVHLVTGSQKRVKIDIHVCKHLSVVDRFGIRRIPNGEHYLYIGDLKHSISLQ 304
Score = 45.5 bits (93), Expect(4) = 3e-035
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1 / -3
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFA 399
A+CEAL VH+ V N G MDG+H +L+F+
Sbjct: 600 ANCEALALGVHIDVKNTGDMDGTHTLLVFS 511
Score = 29.9 bits (59), Expect(4) = 3e-035
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1 / -3
Query: 767 GKLPITWYPESFTA 726
GKLP+TWYP + A
Sbjct: 873 GKLPMTWYPHDYLA 832
>gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012A06 5', mRNA sequence
Length = 635
Score = 65.7 bits (137), Expect(4) = 2e-034
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+PMT+MNMR DPS GYPGRTYRFYTG+ V
Sbjct: 77 VPMTNMNMRTDPSNGYPGRTYRFYTGETV 163
Score = 54.7 bits (113), Expect(4) = 2e-034
Identities = 28/74 (37%), Positives = 39/74 (52%)
Frame = -1 / +2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + G HVL +G +
Sbjct: 398 SVHNSPQKHLVGFEKVFMHAQTDSHVGFKVDVCKDLSVVDELGSKKVAWGEHVLHIGSLK 577
Query: 206 FELSIEL*QGCAKS 165
L++ +* KS
Sbjct: 578 HSLTVRI*NKTFKS 619
Score = 48.3 bits (99), Expect(4) = 2e-034
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 797 EILFGEYNPGGKLPITWYPESF 732
+I+FG YNP G+LP+TWYP+S+
Sbjct: 2 DIIFGSYNPSGRLPMTWYPQSY 67
Score = 36.3 bits (73), Expect(4) = 2e-034
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLL 405
+C+ L F VH+ + N G+M GSH V L
Sbjct: 302 TCQNLTFDVHLRIKNTGTMSGSH*VFL 382
>gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E02 5', mRNA sequence
Length = 586
Score = 65.2 bits (136), Expect(4) = 1e-033
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+PMT+MNMR DPS GYPGRTYRFYTG+ V
Sbjct: 59 VPMTNMNMRPDPSNGYPGRTYRFYTGETV 145
Score = 55.6 bits (115), Expect(4) = 1e-033
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = -1 / +2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + LG HVL +G +
Sbjct: 380 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLK 559
Query: 206 FELSIEL* 183
L++ +*
Sbjct: 560 HSLTVRI* 583
Score = 41.8 bits (85), Expect(4) = 1e-033
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+M GSH V LF+ S
Sbjct: 284 TCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 382
Score = 39.1 bits (79), Expect(4) = 1e-033
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = -1 / +2
Query: 779 YNPGGKLPITWYPESF 732
YNP G+LP+TWYP+S+
Sbjct: 2 YNPSGRLPMTWYPQSY 49
>gb|CB240505.1|CB240505 PopSC00531 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00531, mRNA sequence
Length = 480
Score = 81.7 bits (172), Expect(3) = 2e-033
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -1 / +2
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+I SILW+GYPGE GG + +I+FG YNP G+LP+TWYP+S+
Sbjct: 44 KITSILWVGYPGEAGGAAIADIIFGSYNPSGRLPMTWYPQSY 169
Score = 65.2 bits (136), Expect(3) = 2e-033
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+PMT+MNMR DPS GYPGRTYRFYTG+ V
Sbjct: 179 VPMTNMNMRPDPSNGYPGRTYRFYTGETV 265
Score = 36.3 bits (73), Expect(3) = 2e-033
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1 / +2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAV 411
+C+ L F VH+ + N G+M GSH V
Sbjct: 404 TCQNLTFDVHLRIKNTGTMSGSHTV 478
>gb|BU883581.1|BU883581 UM93TE04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 522
Score = 85.4 bits (180), Expect(2) = 5e-031
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -1 / +2
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
DPRI +ILW+GYPG+ GG + ++LFG NPGGKLP+TWYP ++ A
Sbjct: 149 DPRIGAILWVGYPGQAGGAAIADVLFGTANPGGKLPMTWYPHNYLA 286
Score = 69.3 bits (145), Expect(2) = 5e-031
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+M MRADPSRGYPGRTYRFY G VV AP++++V L
Sbjct: 290 VPMTNMGMRADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREVSVPL 457
>gb|AJ776591.1|AJ776591 AJ776591 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400015F02F1, mRNA sequence
Length = 491
Score = 85.4 bits (180), Expect(2) = 7e-030
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -1 / +1
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
DPRI++ILW GYPG+ GG + ++LFG NPGGKLP+TWYP+ + A
Sbjct: 142 DPRISAILWAGYPGQAGGAAIADVLFGTTNPGGKLPMTWYPQEYLA 279
Score = 65.7 bits (137), Expect(2) = 7e-030
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = -1 / +1
Query: 740 ESFTAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
E +PMT+M MRADPSRGYPGRTYRFY G VV
Sbjct: 268 EYLAKVPMTNMGMRADPSRGYPGRTYRFYKGPVV 369
>gb|DT501879.1|DT501879 WS01314.BR_I22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_I22 5', mRNA sequence
Length = 821
Score = 84.9 bits (179), Expect(2) = 9e-030
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = -1 / +2
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTA 726
DPRI +ILW+GYPG+ GG + ++LFG NPGGKLP+TWYP + A
Sbjct: 524 DPRIGAILWVGYPGQAGGAAIADVLFGTANPGGKLPMTWYPHDYLA 661
Score = 65.7 bits (137), Expect(2) = 9e-030
Identities = 26/52 (50%), Positives = 31/52 (59%)
Frame = -1 / +2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKI 570
+PMT+M MRADPSRGYPGRTYRFY G VV AP+++
Sbjct: 665 VPMTNMGMRADPSRGYPGRTYRFYKGPVVFPFGHGMSYTTFAHSLVQAPREV 820
>gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_M08 3', mRNA sequence
Length = 815
Score = 64.8 bits (135), Expect(4) = 4e-029
Identities = 27/61 (44%), Positives = 39/61 (63%)
Frame = -1 / -3
Query: 371 PIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
P+KQLV FE+VH AAG+ V I V CK +S + G R + +GAH L +GD + +S+
Sbjct: 423 PLKQLVAFEKVHVAAGTQQRVGIDVHVCKFLSVVDRSGIRRIPMGAHSLHIGDVKHSVSL 244
Query: 191 E 189
+
Sbjct: 243 Q 241
Score = 53.8 bits (111), Expect(4) = 4e-029
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = -1 / -3
Query: 731 TAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
T +PMT+M MR S GYPGRTYRFY G VV
Sbjct: 774 TNLPMTNMAMRPSKSNGYPGRTYRFYKGKVV 682
Score = 40.0 bits (81), Expect(4) = 4e-029
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1 / -3
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFAR 396
A C L F V V V N GSMDG+H +L++++
Sbjct: 537 ARCNRLSFGVQVDVKNTGSMDGTHTLLVYSK 445
Score = 29.5 bits (58), Expect(4) = 4e-029
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / -3
Query: 767 GKLPITWYPESF 732
GKLP+TWYP+ +
Sbjct: 813 GKLPMTWYPQDY 778
>gb|CN523319.1|CN523319 GQ015M01.B3_L17 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L17 5', mRNA sequence
Length = 804
Score = 81.7 bits (172), Expect(2) = 8e-029
Identities = 26/42 (61%), Positives = 35/42 (83%)
Frame = -1 / +3
Query: 857 RIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESF 732
+I SILW+GYPGE GG + +I+FG YNP G+LP+TWYP+S+
Sbjct: 414 KITSILWVGYPGEAGGAAIADIIFGSYNPSGRLPMTWYPQSY 539
Score = 65.7 bits (137), Expect(2) = 8e-029
Identities = 26/54 (48%), Positives = 32/54 (59%)
Frame = -1 / +3
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITV 564
+PMT+MNMR DPS GYPGRTYRFYTG+ V + AP ++V
Sbjct: 549 VPMTNMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAPGLVSV 710
>gb|CV227865.1|CV227865 WS0168.B21_G24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_G24
3', mRNA sequence
Length = 845
Score = 60.2 bits (125), Expect(4) = 2e-027
Identities = 25/61 (40%), Positives = 37/61 (60%)
Frame = -1 / -2
Query: 371 PIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSI 192
P KQLV FE+VH AAG+ V I + CK +S + G R + +G H L +GD + +S+
Sbjct: 454 PHKQLVAFEKVHVAAGTQQRVGINIHVCKSLSVVDGSGIRRIPMGEHSLHIGDVKHSVSL 275
Query: 191 E 189
+
Sbjct: 274 Q 272
Score = 55.6 bits (115), Expect(4) = 2e-027
Identities = 21/31 (67%), Positives = 25/31 (80%)
Frame = -1 / -2
Query: 731 TAIPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
T +PMT+M MR+ S+GYPGRTYRFY G VV
Sbjct: 805 TNLPMTNMAMRSSKSKGYPGRTYRFYKGKVV 713
Score = 36.8 bits (74), Expect(4) = 2e-027
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1 / -2
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFAR 396
A C L + V V N GSMDG+H +L+++R
Sbjct: 568 ARCNRLSLGMQVDVKNIGSMDGTHTLLVYSR 476
Score = 29.5 bits (58), Expect(4) = 2e-027
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1 / -2
Query: 767 GKLPITWYPESF 732
GKLP+TWYP+ +
Sbjct: 844 GKLPMTWYPQDY 809
>gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 753
Score = 60.2 bits (125), Expect(3) = 1e-026
Identities = 25/56 (44%), Positives = 31/56 (55%)
Frame = -1 / +1
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+PMT+M MR DPS GYPGRTYR YTG+ V + AP ++V L
Sbjct: 19 VPMTNMXMRPDPSNGYPGRTYRSYTGETVYSFGDGLSYSKFSHELTQAPGLVSVPL 186
Score = 56.1 bits (116), Expect(3) = 1e-026
Identities = 29/74 (39%), Positives = 40/74 (54%)
Frame = -1 / +1
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + LG HVL +G +
Sbjct: 340 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGGKKVALGEHVLHIGSLK 519
Query: 206 FELSIEL*QGCAKS 165
L++ +* KS
Sbjct: 520 HSLTVXI*NKTFKS 561
Score = 41.8 bits (85), Expect(3) = 1e-026
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1 / +1
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+M GSH V LF+ S
Sbjct: 244 TCQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPS 342
>gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 3', mRNA sequence
Length = 679
Score = 65.2 bits (136), Expect(3) = 2e-026
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1 / -2
Query: 725 IPMTDMNMRADPSRGYPGRTYRFYTGDVV 639
+PMT+MNMR DPS GYPGRTYRFYTG+ V
Sbjct: 660 VPMTNMNMRPDPSNGYPGRTYRFYTGETV 574
Score = 56.5 bits (117), Expect(3) = 2e-026
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = -1 / -2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + LG HVL +G +
Sbjct: 339 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLK 160
Query: 206 FELSIEL*QGCAKS 165
+++ +* KS
Sbjct: 159 HSMTVRI*NKTFKS 118
Score = 39.1 bits (79), Expect(3) = 2e-026
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1 / -2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+ GSH V LF+ S
Sbjct: 435 TCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 337
>gb|AI164515.1|AI164515 A064P56U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 392
Score = 119 bits (254), Expect = 3e-026
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = -1 / +3
Query: 863 DPRIASILWLGYPGEVGGQVLPEILFGEYNPGGKLPITWYPESFTAIPMTDMNMR 699
DPRIASILW+GYPGE G + L EI+FGEYNPGG+LP+TWYPESFT + MTDMNMR
Sbjct: 132 DPRIASILWIGYPGEAGAKALAEIIFGEYNPGGRLPMTWYPESFTEVSMTDMNMR 296
>gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0224_M22 3', mRNA sequence
Length = 745
Score = 57.9 bits (120), Expect(3) = 2e-025
Identities = 24/52 (46%), Positives = 29/52 (55%)
Frame = -1 / -2
Query: 713 DMNMRADPSRGYPGRTYRFYTGDVVXXXXXXXXXXXXXXXXSLAPKKITVSL 558
+MNMR DPS GYPGRTYRFYTG+ V + AP ++V L
Sbjct: 744 NMNMRPDPSNGYPGRTYRFYTGETVYSFGDGLSYSEFSHELTQAPGLVSVPL 589
Score = 56.5 bits (117), Expect(3) = 2e-025
Identities = 28/74 (37%), Positives = 40/74 (54%)
Frame = -1 / -2
Query: 386 SVPGFPIKQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEE 207
SV P K LVGFE+V A + S V VD CK +S + G + + LG HVL +G +
Sbjct: 435 SVHNSPQKHLVGFEKVFLHAQTDSHVGFKVDVCKDLSVVDELGSKKVALGEHVLHIGSLK 256
Query: 206 FELSIEL*QGCAKS 165
+++ +* KS
Sbjct: 255 HSMTVRI*NKTFKS 214
Score = 39.1 bits (79), Expect(3) = 2e-025
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1 / -2
Query: 485 SCEALVFSVHVAVSNHGSMDGSHAVLLFARSKS 387
+C+ L F VH+ + N G+ GSH V LF+ S
Sbjct: 531 TCQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPS 433
>gb|CX169718.1|CX169718 H05_69-21_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 636
Score = 100 bits (213), Expect(2) = 4e-025
Identities = 43/102 (42%), Positives = 58/102 (56%)
Frame = -1 / +1
Query: 482 CEALVFSVHVAVSNHGSMDGSHAVLLFARSKSSVPGFPIKQLVGFERVHTAAGSASSVEI 303
CE + V NHG M G H VLLFAR + G P KQL+GF+ V AG + +E
Sbjct: 268 CEQNKCRARIGVKNHGDMAGKHPVLLFARQEKHGNGRPRKQLIGFQSVVLGAGERAEIEF 447
Query: 302 TVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIEL*QG 177
V PC+H+S AN +G V+ G H L V +E+ +S+ +* G
Sbjct: 448 EVSPCEHLSRANEDGLMVMEEGRHFLVVEGDEYPISVVI*YG 573
Score = 36.8 bits (74), Expect(2) = 4e-025
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -1 / +1
Query: 698 ADPSRGYPGRTYRFYTG 648
A+ S GYPGRTYRFY G
Sbjct: 49 AEASSGYPGRTYRFYKG 99
>gb|CV265944.1|CV265944 WS02028.B21_L02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_L02 3', mRNA sequence
Length = 799
Score = 60.2 bits (125), Expect(3) = 8e-024
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = -1 / -2
Query: 365 KQLVGFERVHTAAGSASSVEITVDPCKHMSAANPEGKRVLLLGAHVLTVGDEEFELSIE 189
KQL+GFE+VH GS V+I + CKH+S + G R + +G H L +GD + +S++
Sbjct: 480 KQLIGFEKVHLVTGSQKRVKIDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKHSISLQ 304
Score = 46.4 bits (95), Expect(3) = 8e-024
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -1 / -3
Query: 695 DPSRGYPGRTYRFYTGDVV 639
DPSRGYPGRTYRFY G VV
Sbjct: 797 DPSRGYPGRTYRFYKGPVV 741
Score = 45.5 bits (93), Expect(3) = 8e-024
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1 / -2
Query: 488 ASCEALVFSVHVAVSNHGSMDGSHAVLLFA 399
A+CEAL VH+ V N G MDG+H +L+F+
Sbjct: 600 ANCEALALGVHIDVKNTGDMDGTHTLLVFS 511
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 461,267,757
Number of Sequences: 369679
Number of extensions: 7255626
Number of successful extensions: 53313
Number of sequences better than 1.0e-020: 31
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11416201300
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)