TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5351892.2.1
         (466 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BP932582.1|BP932582  BP932582 full-length enriched poplar...   136   7e-032
gb|BP933583.1|BP933583  BP933583 full-length enriched poplar...   136   7e-032
gb|AJ770189.1|AJ770189  AJ770189 Populus euphratica leaf 3-6...   106   7e-023

>gb|BP932582.1|BP932582 BP932582 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-037_M07.r 3', mRNA sequence
          Length = 563

 Score =  136 bits (292), Expect = 7e-032
 Identities = 47/67 (70%), Positives = 56/67 (83%)
 Frame = +3 / -1

                                                                       
Query: 12  GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
           GL+PWI+ K+EN   PDPPC RAMS+EPCFH  PFYDCKA+K  D G +VP+VRHCED+S
Sbjct: 410 GLRPWILYKTENDTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGTLVPHVRHCEDIS 231

                  
Query: 192 WGLKIVD 212
           WGLK+VD
Sbjct: 230 WGLKVVD 210



>gb|BP933583.1|BP933583 BP933583 full-length enriched poplar cDNA library Populus nigra
           cDNA clone PnFL1-053_K10.r 3', mRNA sequence
          Length = 617

 Score =  136 bits (292), Expect = 7e-032
 Identities = 47/67 (70%), Positives = 56/67 (83%)
 Frame = +3 / -1

                                                                       
Query: 12  GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
           GL+PWI+ K+EN   PDPPC RAMS+EPCFH  PFYDCKA+K  D G +VP+VRHCED+S
Sbjct: 413 GLRPWILYKTENDTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGTLVPHVRHCEDIS 234

                  
Query: 192 WGLKIVD 212
           WGLK+VD
Sbjct: 233 WGLKVVD 213



>gb|AJ770189.1|AJ770189 AJ770189 Populus euphratica leaf 3-6 months, adult Populus
           euphratica cDNA clone P0001100008E10F1, mRNA sequence
          Length = 315

 Score =  106 bits (227), Expect = 7e-023
 Identities = 37/54 (68%), Positives = 43/54 (79%)
 Frame = +3 / -3

                                                                 
Query: 42  ENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVSWGLK 203
           EN   PDPPC RAMS+EPCFH  PFYDCKA+K  D G +VP+VR CED++WGLK
Sbjct: 313 ENDTAPDPPCCRAMSMEPCFHAPPFYDCKAKKGIDTGALVPHVRPCEDINWGLK 152



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 212,559,104
Number of Sequences: 369679
Number of extensions: 2547961
Number of successful extensions: 54500
Number of sequences better than 1.0e-020: 3
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 5129169552
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)