TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV243423.1|CV243423 WS02518.B21_N10 PT-MB-N-A-15 Populus... 138 2e-043
gb|DT522168.1|DT522168 WS02036.B21_D24 PTxN-IB-N-A-11 Popul... 135 2e-041
gb|DT481536.1|DT481536 WS02532.BR_C10 PT-MB-N-A-15 Populus ... 113 1e-036
gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Po... 135 4e-036
gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus ... 128 6e-031
gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremonti... 119 4e-029
gb|CX179699.1|CX179699 E01_45-18_09.ab1 leaf inoculated wit... 98 9e-028
gb|CV243790.1|CV243790 WS0252.B21_N18 PT-MB-N-A-15 Populus ... 80 4e-027
gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus t... 117 8e-025
gb|CN520982.1|CN520982 GQ0108.B3_E06 GQ010 Populus trichoca... 104 7e-021
>gb|CV243423.1|CV243423 WS02518.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_N10 3', mRNA sequence
Length = 947
Score = 138 bits (297), Expect(3) = 2e-039
Identities = 65/118 (55%), Positives = 73/118 (61%)
Frame = -2 / +3
Query: 358 SESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFW 179
S++G S DT E P G S TP+ RCCSS+IF++YFP AS+R RF
Sbjct: 570 SDTGQLSPDTGAETPEPGTSSRTPLNRCCSSIIFFKYFPWASMRNCSCLCTSNCSCRRFC 749
Query: 178 TSICSLRASDICNPEDPSSPASKSPGSLLSVLFPSVEASGIYFASLYFCK*LFTWYIV 5
TSICSL AS IC PE+PS S SP S LS FPS E SG YFAS YFCK L TW IV
Sbjct: 750 TSICSLSASVICIPEEPSELESTSPVSFLSTFFPSDEESGRYFASRYFCKWLLTW*IV 923
Score = 113 bits (242), Expect(3) = 2e-043
Identities = 45/60 (75%), Positives = 54/60 (90%)
Frame = +3 / -2
Query: 6 TIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQK 185
TIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+L+ +GSSG+QI+EALKLQMEVQK
Sbjct: 922 TIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDGSSGMQITEALKLQMEVQK 743
Score = 59.3 bits (123), Expect(3) = 2e-043
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3 / -2
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSE 359
AQGKYL+KIIEEQQRL+GV + P G S VS D P S+
Sbjct: 691 AQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNCPVSD 569
Score = 48.7 bits (100), Expect(3) = 2e-043
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / -2
Query: 480 SRNEPLTPDSNCQNGSPVASPNHERAAKRQ 569
S++EPLTPDS C GSP SP ER+ K+Q
Sbjct: 457 SQHEPLTPDSRCNTGSPAESPRGERSLKKQ 368
Score = 35.4 bits (71), Expect(3) = 2e-039
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2 / +3
Query: 568 CLLAALSWFGLATGEPFWQLESGVSGS 488
C + LS GL+ GEP Q ESGV+GS
Sbjct: 369 CFFSDLSPLGLSAGEPVLQRESGVNGS 449
Score = 26.3 bits (51), Expect(3) = 2e-039
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2 / +3
Query: 400 GDSDAGAGVEGSV 362
GDS+ GAGV GSV
Sbjct: 525 GDSEVGAGVAGSV 563
>gb|DT522168.1|DT522168 WS02036.B21_D24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_D24 3', mRNA sequence
Length = 919
Score = 135 bits (290), Expect(3) = 1e-038
Identities = 62/115 (53%), Positives = 71/115 (61%)
Frame = -2 / +1
Query: 358 SESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFW 179
S++G S DT E P G S TP+ RCCSS+IF++YFP AS+R RF
Sbjct: 574 SDTGQLSPDTGAETPEPGTSSRTPLNRCCSSIIFFKYFPWASMRNCSCLCTSNCSCRRFC 753
Query: 178 TSICSLRASDICNPEDPSSPASKSPGSLLSVLFPSVEASGIYFASLYFCK*LFTW 14
TSICSL AS IC P++PS S SP S LS FPS E SG YFAS YFCK L TW
Sbjct: 754 TSICSLSASVICIPDEPSELESTSPVSFLSTFFPSDEESGRYFASRYFCKWLLTW 918
Score = 106 bits (226), Expect(3) = 2e-041
Identities = 42/57 (73%), Positives = 51/57 (89%)
Frame = +3 / -3
Query: 15 HVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQK 185
HVKSHLQKYRLAKY+PD+S+DG K D K+ GD+L+ +GSSG+QI+EALKLQMEVQK
Sbjct: 917 HVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDGSSGMQITEALKLQMEVQK 747
Score = 59.3 bits (123), Expect(3) = 2e-041
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3 / -3
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSE 359
AQGKYL+KIIEEQQRL+GV + P G S VS D P S+
Sbjct: 695 AQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNCPVSD 573
Score = 48.7 bits (100), Expect(3) = 2e-041
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / -3
Query: 480 SRNEPLTPDSNCQNGSPVASPNHERAAKRQ 569
S++EPLTPDS C GSP SP ER+ K+Q
Sbjct: 461 SQHEPLTPDSRCNTGSPAESPRGERSLKKQ 372
Score = 35.4 bits (71), Expect(3) = 1e-038
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2 / +1
Query: 568 CLLAALSWFGLATGEPFWQLESGVSGS 488
C + LS GL+ GEP Q ESGV+GS
Sbjct: 373 CFFSDLSPLGLSAGEPVLQRESGVNGS 453
Score = 26.3 bits (51), Expect(3) = 1e-038
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2 / +1
Query: 400 GDSDAGAGVEGSV 362
GDS+ GAGV GSV
Sbjct: 529 GDSEVGAGVAGSV 567
>gb|DT481536.1|DT481536 WS02532.BR_C10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_C10 5', mRNA sequence
Length = 796
Score = 113 bits (242), Expect(3) = 1e-036
Identities = 54/104 (51%), Positives = 63/104 (60%)
Frame = -2 / -1
Query: 400 GDSDAGAGVEGSVRSESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXX 221
GDS+ GAGV GSV S+SG S DT P G S TP+ RCCSS+IF++YFP AS+R
Sbjct: 487 GDSEVGAGVAGSVLSDSGQLSPDTGAATPEPGTSSRTPLNRCCSSIIFFKYFPWASMRNC 308
Query: 220 XXXXXXXXXXSRFWTSICSLRASDICNPEDPSSPASKSPGSLLS 89
RF TSICSL AS IC P++PS SP S LS
Sbjct: 307 SCLCTSNCSCRRFCTSICSLSASVICMPDEPSKLEIISPVSFLS 176
Score = 65.2 bits (136), Expect(4) = 2e-034
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +3 / +3
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEG 131
LTIYHVKSHLQKYRLAKY+PD+S+D +K + D L G G
Sbjct: 99 LTIYHVKSHLQKYRLAKYLPDSSSDADKKETGDMISNLDGSSG 227
Score = 61.1 bits (127), Expect(4) = 2e-034
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3 / +3
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSER 362
AQGKYL+KIIEEQQRL+GV + P G + VS D P+S++
Sbjct: 324 AQGKYLKKIIEEQQRLSGVLEDVPGSGVAAPVSGDNCPESDK 449
Score = 49.2 bits (101), Expect(4) = 2e-034
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +3 / +3
Query: 480 SRNEPLTPDSNCQNGSPVASPNHERAAKRQRGS 578
S+ EPLTPDS C GSP SP ER+ K+QR S
Sbjct: 555 SQPEPLTPDSRCNAGSPAESPRGERSMKKQRVS 653
Score = 40.5 bits (82), Expect(3) = 1e-036
Identities = 24/52 (46%), Positives = 26/52 (50%)
Frame = -2 / -1
Query: 577 LPRCLLAALSWFGLATGEPFWQLESGVSGSLRERESP*QVLLVASVRSPVSL 422
L RC LS GL+ GEP Q ESGVSGS E L A RS +L
Sbjct: 652 LTRCFFIDLSPLGLSAGEPALQRESGVSGSG*EENDSSIERLFAGARSLAAL 497
Score = 36.8 bits (74), Expect(3) = 1e-036
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -3 / -2
Query: 93 YRSCSHQLKHQEYTLLVCISASDFLHGILL 4
+ SC HQ++ QE L V IS + F HGILL
Sbjct: 189 FPSCPHQMRSQEGILQVDISVNGF*HGILL 100
Score = 31.3 bits (62), Expect(4) = 2e-034
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1 / +1
Query: 136 LDCRYLKPSNCRWRSKSGCTNS*KYKGS 219
L C+ K S+CRWR KS ++ +Y+ S
Sbjct: 223 LACKLQKHSSCRWRCKSVYMSNWRYRDS 306
>gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 135 bits (289), Expect = 3e-031
Identities = 63/118 (53%), Positives = 72/118 (61%)
Frame = -2 / -2
Query: 358 SESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFW 179
S+SG S +T E P G S TP+ RCCSS+IF++YFP AS+R RF
Sbjct: 544 SDSGQLSPETGAETPEPGTSSRTPLNRCCSSIIFFKYFPWASMRNCSCLRTSNCSCRRFC 365
Query: 178 TSICSLRASDICNPEDPSSPASKSPGSLLSVLFPSVEASGIYFASLYFCK*LFTWYIV 5
TSICSL AS IC P++PS SP S LS FPS E SG YFAS YFCK L TW IV
Sbjct: 364 TSICSLSASVICIPDEPSELERTSPVSFLSTFFPSDEESGRYFASRYFCKWLLTW*IV 191
Score = 115 bits (246), Expect(2) = 4e-036
Identities = 46/61 (75%), Positives = 55/61 (90%)
Frame = +3 / +3
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
LTIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+L+ +GSSG+QI+EALKLQMEVQ
Sbjct: 189 LTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDGSSGMQITEALKLQMEVQ 368
Query: 183 K 185
K
Sbjct: 369 K 371
Score = 61.6 bits (128), Expect(2) = 4e-036
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +3 / +3
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSE 359
AQGKYL+KIIEEQQRL+GV + P G S VS D P+S+
Sbjct: 423 AQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNCPESD 545
>gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_I07 5', mRNA sequence
Length = 891
Score = 128 bits (275), Expect = 2e-029
Identities = 58/104 (55%), Positives = 65/104 (62%)
Frame = -2 / -1
Query: 316 PPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFWTSICSLRASDICNP 137
P G S TP+ RCCSS+IF++YFP AS+R RF TSICSL AS IC P
Sbjct: 870 PSPGTSQRTPLNRCCSSIIFFKYFPWASMRNCSCLCTSNCSCRRFXTSICSLSASVICMP 691
Query: 136 EDPSSPASKSPGSLLSVLFPSVEASGIYFASLYFCK*LFTWYIV 5
++PS SP S LS FPS E SG YFAS YFCK L TWYIV
Sbjct: 690 DEPSKLEIISPVSFLSAFFPSDEESGRYFASRYFCKWLLTWYIV 559
Score = 115 bits (245), Expect(2) = 6e-031
Identities = 45/61 (73%), Positives = 55/61 (90%)
Frame = +3 / +2
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
LTIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+++ L+GSSG+QI+EALKLQMEV
Sbjct: 557 LTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMISNLDGSSGMQITEALKLQMEVX 736
Query: 183 K 185
K
Sbjct: 737 K 739
Score = 44.1 bits (90), Expect(2) = 6e-031
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3 / +2
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGG 317
AQGKYL+KIIEEQQRL+GV + P G
Sbjct: 791 AQGKYLKKIIEEQQRLSGVL*DVPGLG 871
>gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 895
Score = 119 bits (254), Expect = 2e-026
Identities = 54/104 (51%), Positives = 61/104 (58%)
Frame = -2 / -3
Query: 316 PPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFWTSICSLRASDICNP 137
P G S TP+ CCS + F++YFP AS+R R TSICSL AS IC P
Sbjct: 887 PEPGTSSRTPLNLCCSQLFFFKYFPWASMRNCSCLCTSNCSCRRXCTSICSLSASVICMP 708
Query: 136 EDPSSPASKSPGSLLSVLFPSVEASGIYFASLYFCK*LFTWYIV 5
++PS SP S LS FPS E SG YFAS YFCK L TWYIV
Sbjct: 707 DEPSKLEIISPVSFLSAFFPSDEESGRYFASRYFCKWLLTWYIV 576
Score = 115 bits (245), Expect(2) = 4e-029
Identities = 45/61 (73%), Positives = 55/61 (90%)
Frame = +3 / +1
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
LTIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+++ L+GSSG+QI+EALKLQMEV
Sbjct: 574 LTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMISNLDGSSGMQITEALKLQMEVX 753
Query: 183 K 185
K
Sbjct: 754 K 756
Score = 37.7 bits (76), Expect(2) = 4e-029
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3 / +1
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGAS 323
AQGKYL+K EQQRL+GV + P G +
Sbjct: 808 AQGKYLKKNN*EQQRLSGVLEDVPGSGVA 894
>gb|CX179699.1|CX179699 E01_45-18_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 695
Score = 97.7 bits (207), Expect(3) = 2e-027
Identities = 46/92 (50%), Positives = 55/92 (59%)
Frame = -2 / -1
Query: 358 SESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIRXXXXXXXXXXXXSRFW 179
S++G S DT E P G S TP+ RCCSS+IF++YFP AS+R RF
Sbjct: 281 SDTGQLSPDTGAETPEPGTSSRTPLNRCCSSIIFFKYFPWASMRNCSCLCTSNCSCRRFC 102
Query: 178 TSICSLRASDICNPEDPSSPASKSPGSLLSVL 83
TSICSL AS IC P++PS S SP S LS L
Sbjct: 101 TSICSLSASVICIPDEPSELESTSPVSFLSTL 6
Score = 59.3 bits (123), Expect(3) = 9e-028
Identities = 25/41 (60%), Positives = 29/41 (70%)
Frame = +3 / +1
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSE 359
AQGKYL+KIIEEQQRL+GV + P G S VS D P S+
Sbjct: 160 AQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNCPVSD 282
Score = 58.3 bits (121), Expect(3) = 9e-028
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +3 / +1
Query: 78 GNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQK 185
G + D K+ GD+L+ +GSSG+QI+EALKLQMEVQK
Sbjct: 1 GTRVDKKETGDVLSNSDGSSGMQITEALKLQMEVQK 108
Score = 48.7 bits (100), Expect(3) = 9e-028
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3 / +1
Query: 480 SRNEPLTPDSNCQNGSPVASPNHERAAKRQ 569
S++EPLTPDS C GSP SP ER+ K+Q
Sbjct: 394 SQHEPLTPDSRCNTGSPAESPRGERSLKKQ 483
Score = 35.4 bits (71), Expect(3) = 2e-027
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2 / -1
Query: 568 CLLAALSWFGLATGEPFWQLESGVSGS 488
C + LS GL+ GEP Q ESGV+GS
Sbjct: 482 CFFSDLSPLGLSAGEPVLQRESGVNGS 402
Score = 26.3 bits (51), Expect(3) = 2e-027
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -2 / -1
Query: 400 GDSDAGAGVEGSV 362
GDS+ GAGV GSV
Sbjct: 326 GDSEVGAGVAGSV 288
>gb|CV243790.1|CV243790 WS0252.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_N18 3', mRNA sequence
Length = 828
Score = 80.3 bits (169), Expect(3) = 4e-027
Identities = 34/58 (58%), Positives = 41/58 (70%)
Frame = -2 / +3
Query: 400 GDSDAGAGVEGSVRSESGN*SLDTVTEAPPAGVSDFTPVKRCCSSMIFWRYFP*ASIR 227
GDS+ GAGV GSV S+SG S DT P G S TP+ RCCSS+IF++YFP AS+R
Sbjct: 534 GDSEVGAGVAGSVLSDSGQLSPDTGAATPEPGTSSRTPLNRCCSSIIFFKYFPWASMR 707
Score = 61.1 bits (127), Expect(3) = 1e-025
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3 / -3
Query: 237 AQGKYLQKIIEEQQRLTGVKSETPAGGASVTVSSDQFPDSER 362
AQGKYL+KIIEEQQRL+GV + P G + VS D P+S++
Sbjct: 697 AQGKYLKKIIEEQQRLSGVLEDVPGSGVAAPVSGDNCPESDK 572
Score = 49.2 bits (101), Expect(3) = 1e-025
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +3 / -3
Query: 480 SRNEPLTPDSNCQNGSPVASPNHERAAKRQRGS 578
S+ EPLTPDS C GSP SP ER+ K+QR S
Sbjct: 466 SQPEPLTPDSRCNAGSPAESPRGERSMKKQRVS 368
Score = 48.7 bits (100), Expect(3) = 1e-025
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +3 / -2
Query: 108 DLLAGLEGSSGLQISEALKLQMEVQK 185
D+++ L+GSSG+QI+EALKLQMEVQK
Sbjct: 827 DMISNLDGSSGMQITEALKLQMEVQK 750
Score = 40.5 bits (82), Expect(3) = 4e-027
Identities = 24/52 (46%), Positives = 26/52 (50%)
Frame = -2 / +3
Query: 577 LPRCLLAALSWFGLATGEPFWQLESGVSGSLRERESP*QVLLVASVRSPVSL 422
L RC LS GL+ GEP Q ESGVSGS E L A RS +L
Sbjct: 369 LTRCFFIDLSPLGLSAGEPALQRESGVSGSG*EENDSSIERLFAGARSLAAL 524
Score = 37.7 bits (76), Expect(3) = 4e-027
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 187 RFWTSICSLRASDICNPEDPS 125
RF TSICSL AS IC P++PS
Sbjct: 748 RFCTSICSLSASVICMPDEPS 810
>gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_J17 5', mRNA sequence
Length = 760
Score = 117 bits (251), Expect = 8e-025
Identities = 46/61 (75%), Positives = 56/61 (91%)
Frame = +3 / +3
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
LTIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+++ L+GSSG+QI+EALKLQMEVQ
Sbjct: 531 LTIYHVKSHLQKYRLAKYLPDSSSDGKKADKKETGDMISNLDGSSGMQITEALKLQMEVQ 710
Query: 183 K 185
K
Sbjct: 711 K 713
>gb|CN520982.1|CN520982 GQ0108.B3_E06 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_E06 5', mRNA sequence
Length = 723
Score = 104 bits (221), Expect = 7e-021
Identities = 42/61 (68%), Positives = 51/61 (83%)
Frame = +3 / +3
Query: 3 LTIYHVKSHLQKYRLAKYIPDASTDGNKTDNKDPGDLLAGLEGSSGLQISEALKLQMEVQ 182
LTIYHVKSHLQKYRLAKY+PD+S+DG K D K+ GD+L+ + SSG+QI+ ALKL EVQ
Sbjct: 507 LTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDXSSGMQITXALKLXXEVQ 686
Query: 183 K 185
K
Sbjct: 687 K 689
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 294,513,006
Number of Sequences: 369679
Number of extensions: 4216655
Number of successful extensions: 68704
Number of sequences better than 1.0e-020: 13
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6950794778
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)