TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3923331.2.1
         (496 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AJ891040.1|  Populus tremula x Populus alba mRNA for alp...   169   9e-042
gb|DT526453.1|DT526453  WS02048.C21_B09 PTxN-IB-N-A-11 Popul...   154   3e-037
gb|CV272375.1|CV272375  WS0157.B21_H14 PTxN-IB-A-6 Populus t...   134   4e-031

>emb|AJ891040.1| Populus tremula x Populus alba mRNA for alpha 1,3 fucosyltransferase
            (poFUT2 gene), clone INRA 717 1B4
          Length = 1569

 Score =  169 bits (364), Expect = 9e-042
 Identities = 65/99 (65%), Positives = 83/99 (83%)
 Frame = -3 / +1

                                                                        
Query: 491  RERGRFKSESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIY 312
            RERGRF+ ESI++RSG LT+ ALE+AVL KF+SL HVP+WK ERP SIRGGDD K+YR+Y
Sbjct: 1273 RERGRFQMESIFLRSGNLTVNALEAAVLKKFKSLKHVPIWKQERPESIRGGDDFKVYRVY 1452

                                                   
Query: 311  PVGLTQRQALYGFRFRDDSELEQYIKDHPCAKLEVIFV* 195
            PVG+TQRQALY ++F  D + + +++ +PCAK EVIFV*
Sbjct: 1453 PVGMTQRQALYSYKFNTDDDFKNHLEVNPCAKFEVIFV* 1569



>gb|DT526453.1|DT526453 WS02048.C21_B09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02048_B09 3', mRNA sequence
          Length = 677

 Score =  154 bits (331), Expect = 3e-037
 Identities = 59/91 (64%), Positives = 77/91 (84%)
 Frame = -3 / -3

                                                                       
Query: 467 ESIYMRSGQLTLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQ 288
           ESI++RSG LT+ ALE+AVL KF+SL HVP+WK ERP SIRGGDD K+YR+YPVG+TQRQ
Sbjct: 669 ESIFLRSGNLTVKALEAAVLKKFKSLKHVPIWKQERPESIRGGDDFKVYRVYPVGMTQRQ 490

                                          
Query: 287 ALYGFRFRDDSELEQYIKDHPCAKLEVIFV* 195
           ALY ++F  D++ + +++ +PCAK EVIFV*
Sbjct: 489 ALYSYKFNTDNDFKNHLEVNPCAKFEVIFV* 397



>gb|CV272375.1|CV272375 WS0157.B21_H14 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
           clone WS0157_H14 3', mRNA sequence
          Length = 688

 Score =  134 bits (287), Expect = 4e-031
 Identities = 51/81 (62%), Positives = 66/81 (81%)
 Frame = -3 / -3

                                                                       
Query: 437 TLGALESAVLGKFRSLNHVPVWKDERPPSIRGGDDLKLYRIYPVGLTQRQALYGFRFRDD 258
           T+ ALE+AVL KF+SL HVP+WK ERP SIRGGDD K+YR+YPVG+TQRQALY ++F   
Sbjct: 686 TVNALEAAVLKKFKSLKHVPIWKQERPESIRGGDDFKVYRVYPVGMTQRQALYSYKFNTA 507

                                
Query: 257 SELEQYIKDHPCAKLEVIFV* 195
            + + +++ +PCAK EVIFV*
Sbjct: 506 DDFKNHLEVNPCAKFEVIFV* 444



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 239,711,766
Number of Sequences: 369679
Number of extensions: 3015488
Number of successful extensions: 50011
Number of sequences better than 1.0e-020: 3
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 5622358932
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)