TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3742446.2.1
(598 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN519836.1|CN519836 GQ0105.B3_D21 GQ010 Populus trichoca... 132 5e-056
gb|CF230144.1|CF230144 PtaC0004D11E0909 Poplar cDNA library... 130 7e-047
gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Po... 103 3e-046
gb|DT476275.1|DT476275 WS01228.B21_P13 PT-GT-FL-A-3 Populus... 109 4e-041
gb|CX653687.1|CX653687 PO02005E10 Poplar SC cDNA library Po... 95 3e-039
gb|DT473223.1|DT473223 WS01228.BR_P13 PT-GT-FL-A-3 Populus ... 109 7e-038
gb|CX169141.1|CX169141 C08_69-94_06.ab1 leaf inoculated wit... 73 7e-038
gb|CN519340.1|CN519340 GQ0102.B3_M07 GQ010 Populus trichoca... 151 5e-037
gb|BU880599.1|BU880599 UM52TB12 Populus flower cDNA library... 151 4e-036
gb|DT509401.1|DT509401 WS02423.BR_K04 PTxD-ICC-N-A-14 Popul... 79 3e-031
gb|DT515281.1|DT515281 WS02427.B21_C08 PTxD-ICC-N-A-14 Popu... 107 7e-030
gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated wit... 123 1e-027
gb|CK097994.1|CK097994 A001P37.5pR Hybrid aspen plasmid lib... 75 4e-027
gb|BU896443.1|BU896443 X040G03 Populus wood cDNA library Po... 111 5e-027
gb|CX654964.1|CX654964 PO01003C04 Poplar SC cDNA library Po... 110 1e-023
gb|CX657957.1|CX657957 PO01007D11 Poplar SC cDNA library Po... 110 1e-023
gb|CX658670.1|CX658670 PO01020G08 Poplar SC cDNA library Po... 110 1e-023
gb|CX659990.1|CX659990 PO01016F08 Poplar SC cDNA library Po... 110 1e-023
gb|BU878035.1|BU878035 V042D07 Populus flower cDNA library ... 94 2e-022
gb|AI162064.1|AI162064 A011P60U Hybrid aspen plasmid librar... 101 2e-022
gb|BU866443.1|BU866443 S066G12 Populus imbibed seed cDNA li... 102 2e-021
gb|DN498729.1|DN498729 S066G12.5pR Populus imbibed seed cDN... 102 2e-021
>gb|CN519836.1|CN519836 GQ0105.B3_D21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_D21 5', mRNA sequence
Length = 833
Score = 132 bits (282), Expect(3) = 5e-056
Identities = 50/117 (42%), Positives = 69/117 (58%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY YR KY+ Q+G +GI LD +W+EP ++S
Sbjct: 395 GNSATEPYIVAHNMLLSHGAAADIYRKKYKAKQQGSVGISLDVIWFEPATNSTKDIEAAQ 574
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
F LGWF++P++ G YP SM+ DRLP F++ +A + KGS+D+VGINHYT+F
Sbjct: 575 RAQDFQLGWFIEPLILGDYPISMRNRVGDRLPKFTENDAALVKGSLDFVGINHYTTF 745
Score = 98.2 bits (208), Expect(3) = 5e-056
Identities = 36/54 (66%), Positives = 42/54 (77%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
GWLSP+I++ FA +AE CF +GDRVKNW TFNEP V+ GYD GL APGRCS
Sbjct: 206 GWLSPQIIKDFATFAETCFQNYGDRVKNWITFNEPHTVSIQGYDVGLQAPGRCS 367
Score = 26.3 bits (51), Expect(3) = 5e-056
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3 / +2
Query: 18 LYHYDLPLALHEQ 56
L+H+DLP ALH++
Sbjct: 161 LFHWDLPQALHDR 199
>gb|CF230144.1|CF230144 PtaC0004D11E0909 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 130 bits (278), Expect(2) = 7e-047
Identities = 49/117 (41%), Positives = 68/117 (58%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS EPY YR KY+ Q+G +GI LD +W+EP ++S
Sbjct: 151 GNSAAEPYIVAHNMLLSHGTAADIYRKKYEAKQQGSVGISLDVIWFEPATNSTKDIEAAQ 330
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
F LGWF++P++ G YP SM+ DRLP F++ +A + KGS+D+VGINHYT+F
Sbjct: 331 RAQDFQLGWFIEPLILGDYPISMRNRVGDRLPKFTENDAALVKGSLDFVGINHYTTF 501
Score = 77.1 bits (162), Expect(2) = 7e-047
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2 / +1
Query: 101 YAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
+A+ CF +GDRVKNW TFNEP VA GYD GL APGRCS
Sbjct: 1 FADTCFQTYGDRVKNWITFNEPHTVAIQGYDVGLQAPGRCS 123
>gb|CX654585.1|CX654585 PO02016G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016G03 5', mRNA sequence
Length = 476
Score = 103 bits (219), Expect(2) = 3e-046
Identities = 40/84 (47%), Positives = 50/84 (59%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS TEPY +RYR+KYQ QKG+IGILLDFV+Y+P + S
Sbjct: 224 GNSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYQPLTRSKADNLAAQ 403
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQ 490
FH+GWF+ PIV+G YP +MQ
Sbjct: 404 RARDFHVGWFIHPIVYGEYPKTMQ 475
Score = 101 bits (216), Expect(2) = 3e-046
Identities = 39/54 (72%), Positives = 43/54 (79%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G LS ++V+ FADYA+FCF FGDRVKNW TFN R VAALGYDNG APGRCS
Sbjct: 38 GLLSNQVVKEFADYADFCFKTFGDRVKNWMTFNXTRVVAALGYDNGFFAPGRCS 199
Score = 70.7 bits (148), Expect(2) = 5e-026
Identities = 35/54 (64%), Positives = 38/54 (70%)
Frame = -2 / -3
Query: 222 EHLPGACKPLS*PRAATHLGSLKVNQFFTLSPNAWKQNSA*SANASTIFGLSQP 61
EHLPGA KPLS P AAT L SL V QFFT SP KQ SA*SAN+ T + L+ P
Sbjct: 198 EHLPGAKKPLSYPSAATTLVSLNVIQFFTRSPKVLKQKSA*SANSFTTWLLNNP 37
Score = 66.6 bits (139), Expect(2) = 5e-026
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = -1 / -2
Query: 490 LHRVRVPSMYNGVKEPA*VEVPGSLCCSLVRIAVAERFVPHEIQENSNLPLLVKLILVAV 311
LH R+ ++YN + +P+ +E+ SL C +V +R V ++IQENSN LL LIL A+
Sbjct: 475 LHCFRIFTIYNRMDKPSNMEISCSLSC*VVSF*SGKRLVINKIQENSNPSLLFFLILFAI 296
Query: 310 SPGRSCMRKDEMVCDKVR 257
S SC+R+++M+ + +R
Sbjct: 295 SLNSSCVRQNQMMSNNIR 242
>gb|DT476275.1|DT476275 WS01228.B21_P13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P13 3', mRNA sequence
Length = 936
Score = 109 bits (232), Expect(3) = 4e-041
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = +2 / -3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G LS ++V+ FADYA+FCF FGDRVKNW TFNEPR VAALGYDNGL APGRCS
Sbjct: 604 GLLSYQVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGLFAPGRCS 443
Score = 65.2 bits (136), Expect(3) = 4e-041
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +2 / -3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEP 382
G+S TEPY +RYR+KYQ QKG+IGILLDFV+YEP
Sbjct: 418 GDSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYEP 275
Score = 31.8 bits (63), Expect(3) = 4e-041
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 15 NLYHYDLPLALHEQ 56
NLYHYDLPLAL ++
Sbjct: 652 NLYHYDLPLALEKK 611
>gb|CX653687.1|CX653687 PO02005E10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02005E10 5', mRNA sequence
Length = 523
Score = 95.0 bits (201), Expect(2) = 3e-039
Identities = 40/108 (37%), Positives = 55/108 (50%)
Frame = +2 / +2
Query: 236 GGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXX 415
GGNS EPY + Y+DKYQ Q+G+IGI + W+ P ++
Sbjct: 200 GGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQRGQIGITIVSHWFLPKFNTTADRIAV 379
Query: 416 XXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSID 559
F GWF PI G YP SM+ + +RLP F+ E++ M KGS+D
Sbjct: 380 SRALDFMFGWFARPITFGDYPDSMRTLVGNRLPKFTKEQSAMLKGSLD 523
Score = 86.8 bits (183), Expect(2) = 3e-039
Identities = 34/54 (62%), Positives = 40/54 (74%)
Frame = +2 / +2
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G+LS KIV+ FA+YA+FCF FGDRVK W T NEP +A GY+ G APGRCS
Sbjct: 20 GFLSSKIVDDFAEYADFCFKTFGDRVKYWITMNEPNGLAINGYNFGSFAPGRCS 181
>gb|DT473223.1|DT473223 WS01228.BR_P13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_P13 5', mRNA sequence
Length = 908
Score = 109 bits (232), Expect(4) = 7e-038
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = +2 / +3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G LS ++V+ FADYA+FCF FGDRVKNW TFNEPR VAALGYDNGL APGRCS
Sbjct: 573 GLLSYQVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGLFAPGRCS 734
Score = 37.7 bits (76), Expect(4) = 7e-038
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +2 / +2
Query: 335 QKGKIGILLDFVWYEPFS 388
QKG+IGILLDFV+YE F+
Sbjct: 854 QKGRIGILLDFVYYETFT 907
Score = 34.1 bits (68), Expect(4) = 7e-038
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIG 352
G+S TEPY +RYR+KYQ +++ +G
Sbjct: 759 GDSATEPYIVAHHLILSHAAAVQRYREKYQENKREGLG 872
Score = 31.8 bits (63), Expect(4) = 7e-038
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 15 NLYHYDLPLALHEQ 56
NLYHYDLPLAL ++
Sbjct: 525 NLYHYDLPLALEKK 566
>gb|CX169141.1|CX169141 C08_69-94_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 617
Score = 72.5 bits (152), Expect(3) = 7e-038
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = +2 / +3
Query: 101 YAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
YAEFCF FGDRVK+W TFNEP + GY+ G APGRCS
Sbjct: 39 YAEFCFKTFGDRVKHWCTFNEPYSFSNNGYNGGTFAPGRCS 161
Score = 72.1 bits (151), Expect(3) = 7e-038
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = +2 / +3
Query: 431 FHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWF +P+ +G YP +M+ I RLP F+ EE+ + KGSID++G+N+YT+
Sbjct: 381 FLFGWFANPLTYGDYPETMKAIVGHRLPKFTKEESALVKGSIDFLGVNYYTT 536
Score = 50.6 bits (104), Expect(3) = 7e-038
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = +2 / +3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFS 388
GNS TEPY + YR+KYQ QKGKIGI + W+ P S
Sbjct: 186 GNSGTEPYMVAHNLILGHAAAVKLYREKYQASQKGKIGITIVTNWFIPKS 335
>gb|CN519340.1|CN519340 GQ0102.B3_M07 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_M07 5', mRNA sequence
Length = 620
Score = 151 bits (324), Expect(2) = 5e-037
Identities = 59/117 (50%), Positives = 75/117 (64%)
Frame = +2 / +1
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
G+S TEPY +RYR+KYQ QKG+IGILLDFV+YEP + S
Sbjct: 52 GDSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYEPLTSSKADNLAAQ 231
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWF+ PIV+G YP +MQ I +RLP F+ EE +M KGS+D+VGIN YT+F
Sbjct: 232 RARDFHIGWFIHPIVYGEYPKTMQNIVGNRLPQFTKEEVKMVKGSMDFVGINQYTTF 402
Score = 23.1 bits (44), Expect(2) = 5e-037
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2 / +1
Query: 197 GLHAPGRCS 223
GL APGRCS
Sbjct: 1 GLFAPGRCS 27
>gb|BU880599.1|BU880599 UM52TB12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 591
Score = 151 bits (324), Expect = 4e-036
Identities = 59/117 (50%), Positives = 75/117 (64%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
G+S TEPY +RYR+KYQ QKG+IGILLDFV+YEP + S
Sbjct: 14 GDSATEPYIVAHHLILSHAAAVQRYREKYQEKQKGRIGILLDFVYYEPLTSSKADNLAAQ 193
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
FH+GWF+ PIV+G YP +MQ I +RLP F+ EE +M KGS+D+VGIN YT+F
Sbjct: 194 RARDFHIGWFIHPIVYGEYPKTMQNIVGNRLPQFTKEEVKMVKGSMDFVGINQYTTF 364
>gb|DT509401.1|DT509401 WS02423.BR_K04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K04 5', mRNA sequence
Length = 869
Score = 79.4 bits (167), Expect(3) = 3e-031
Identities = 30/52 (57%), Positives = 38/52 (73%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGR 217
GWL+ ++V+ FA YA+ CF +FGDRVK+W T NEP A GYD+G APGR
Sbjct: 451 GWLNKEVVKYFAIYADTCFASFGDRVKHWITLNEPLQTAINGYDSGSFAPGR 606
Score = 68.0 bits (142), Expect(3) = 3e-031
Identities = 29/83 (34%), Positives = 40/83 (48%)
Frame = +2 / +1
Query: 248 TTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXX 427
+TEPY YR KY+ Q G+IG++LD W E S+
Sbjct: 619 STEPYLASHHQILAHAAAVSIYRXKYKDKQGGQIGLVLDCEWAETGSNKTEDKVAASRRL 798
Query: 428 XFHLGWFLDPIVHGRYPYSMQEI 496
F LGW+L+P+ +G YP M+EI
Sbjct: 799 EFQLGWYLNPLYYGDYPEVMREI 867
Score = 25.4 bits (49), Expect(3) = 3e-031
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3 / +1
Query: 18 LYHYDLPLALHE 53
LYH+DLPL L E
Sbjct: 406 LYHWDLPLHLQE 441
>gb|DT515281.1|DT515281 WS02427.B21_C08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_C08 3', mRNA sequence
Length = 816
Score = 107 bits (229), Expect(3) = 7e-030
Identities = 41/54 (75%), Positives = 45/54 (83%)
Frame = +2 / -3
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGLHAPGRCS 223
G LS ++V+ FADYA+FCF FGDRVKNW TFNEPR VAALGYDNG APGRCS
Sbjct: 283 GLLSNQVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCS 122
Score = 31.8 bits (63), Expect(3) = 7e-030
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / -3
Query: 15 NLYHYDLPLALHEQ 56
NLYHYDLPLAL ++
Sbjct: 331 NLYHYDLPLALEKK 290
Score = 28.6 bits (56), Expect(3) = 7e-030
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2 / -3
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDK 322
GNS TEPY +RYR+K
Sbjct: 97 GNSATEPYIVAHHLILSHAAAVQRYREK 14
>gb|CX174034.1|CX174034 A08_69-64_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 643
Score = 123 bits (263), Expect = 1e-027
Identities = 45/88 (51%), Positives = 62/88 (70%)
Frame = +2 / +2
Query: 326 QLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKD 505
++ +G+IGILLDFV+YEP + S FH+GWF+ PIV+G YP +MQ I
Sbjct: 11 RIRHEGRIGILLDFVYYEPLTRSKADNLAAQRARDFHVGWFIHPIVYGEYPKTMQNIVGS 190
Query: 506 RLPLFSDEEARMAKGSIDYVGINHYTSF 589
RLP F++EE +M KGS+D+VGINHYT++
Sbjct: 191 RLPKFTEEEVKMVKGSMDFVGINHYTTY 274
>gb|CK097994.1|CK097994 A001P37.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A001P37 5', mRNA sequence
Length = 528
Score = 75.3 bits (158), Expect(2) = 4e-027
Identities = 27/47 (57%), Positives = 37/47 (78%)
Frame = +2 / +3
Query: 449 LDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTSF 589
+ PIV+G YP +MQ I RLP F++EE +M KGS+D+VGINHYT++
Sbjct: 141 IHPIVYGEYPKTMQNIVGSRLPKFTEEEVKMVKGSMDFVGINHYTTY 281
Score = 65.7 bits (137), Expect(2) = 4e-027
Identities = 25/46 (54%), Positives = 30/46 (65%)
Frame = +2 / +1
Query: 308 RYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGW 445
RYR+KYQ QKG+IGILLDFV+YEP + S FH+GW
Sbjct: 1 RYREKYQEKQKGRIGILLDFVYYEPLTRSKADNLAAQRARDFHVGW 138
>gb|BU896443.1|BU896443 X040G03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 729
Score = 111 bits (238), Expect(3) = 5e-027
Identities = 43/98 (43%), Positives = 58/98 (59%)
Frame = +2 / +2
Query: 239 GNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXXX 418
GNS+TEPY + Y++KYQ Q GKIGI L+ W+EP+S+S
Sbjct: 65 GNSSTEPYIVAHHLLLSHAAAVKTYKEKYQASQNGKIGITLNTPWFEPYSNSTDDYDAAK 244
Query: 419 XXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEE 532
F LGWFL+PI +G YP SM+E+ K+RLP FS ++
Sbjct: 245 RSLDFSLGWFLNPITYGDYPTSMRELVKERLPTFSSQD 358
Score = 24.0 bits (46), Expect(3) = 5e-027
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2 / +2
Query: 551 SIDYVGINHYTSF 589
+ D+VG+N+YT++
Sbjct: 371 TFDFVGLNYYTAY 409
Score = 22.6 bits (43), Expect(3) = 5e-027
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +2
Query: 191 DNGLHAPGRCS 223
D+G APGRCS
Sbjct: 2 DSGDFAPGRCS 34
>gb|CX654964.1|CX654964 PO01003C04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003C04 5', mRNA sequence
Length = 638
Score = 110 bits (234), Expect = 1e-023
Identities = 44/117 (37%), Positives = 64/117 (54%)
Frame = +2 / +2
Query: 236 GGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXX 415
GGNS EPY + Y+DKYQ Q+G+IGI + W+ P ++
Sbjct: 53 GGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQRGQIGITIVSHWFLPKFNTTADRIAV 232
Query: 416 XXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWF PI G YP SM+ + +RLP F+ E++ M KGS+D++G+N+YT+
Sbjct: 233 SRALDFMFGWFARPITFGDYPDSMRTLVGNRLPKFTKEQSAMLKGSLDFLGLNYYTA 403
>gb|CX657957.1|CX657957 PO01007D11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01007D11 5', mRNA sequence
Length = 638
Score = 110 bits (234), Expect = 1e-023
Identities = 44/117 (37%), Positives = 64/117 (54%)
Frame = +2 / +2
Query: 236 GGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXX 415
GGNS EPY + Y+DKYQ Q+G+IGI + W+ P ++
Sbjct: 53 GGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQRGQIGITIVSHWFLPKFNTTADRIAV 232
Query: 416 XXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWF PI G YP SM+ + +RLP F+ E++ M KGS+D++G+N+YT+
Sbjct: 233 SRALDFMFGWFARPITFGDYPDSMRTLVGNRLPKFTKEQSAMLKGSLDFLGLNYYTA 403
>gb|CX658670.1|CX658670 PO01020G08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01020G08 5', mRNA sequence
Length = 709
Score = 110 bits (234), Expect = 1e-023
Identities = 44/117 (37%), Positives = 64/117 (54%)
Frame = +2 / +2
Query: 236 GGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXX 415
GGNS EPY + Y+DKYQ Q+G+IGI + W+ P ++
Sbjct: 53 GGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQRGQIGITIVSHWFLPKFNTTADRIAV 232
Query: 416 XXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWF PI G YP SM+ + +RLP F+ E++ M KGS+D++G+N+YT+
Sbjct: 233 SRALDFMFGWFARPITFGDYPDSMRTLVGNRLPKFTKEQSAMLKGSLDFLGLNYYTA 403
>gb|CX659990.1|CX659990 PO01016F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01016F08 5', mRNA sequence
Length = 653
Score = 110 bits (234), Expect = 1e-023
Identities = 44/117 (37%), Positives = 64/117 (54%)
Frame = +2 / +2
Query: 236 GGNSTTEPYXXXXXXXXXXXXXXRRYRDKYQLHQKGKIGILLDFVWYEPFSDSNXXXXXX 415
GGNS EPY + Y+DKYQ Q+G+IGI + W+ P ++
Sbjct: 53 GGNSAVEPYVAAHNMILSHGAAVKVYKDKYQAIQRGQIGITIVSHWFLPKFNTTADRIAV 232
Query: 416 XXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPLFSDEEARMAKGSIDYVGINHYTS 586
F GWF PI G YP SM+ + +RLP F+ E++ M KGS+D++G+N+YT+
Sbjct: 233 SRALDFMFGWFARPITFGDYPDSMRTLVGNRLPKFTKEQSAMLKGSLDFLGLNYYTA 403
>gb|BU878035.1|BU878035 V042D07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 693
Score = 93.6 bits (198), Expect(2) = 2e-022
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = +2 / +1
Query: 62 GWLSPKIVEAFADYAEFCFHAFGDRVKNWFTFNEPRCVAALGYDNGL 202
G LS ++V+ FADYA+FCF FGDRVKNW TFNEPR VAALGYDNGL
Sbjct: 553 GLLSYQVVKDFADYADFCFKTFGDRVKNWMTFNEPRVVAALGYDNGL 693
Score = 31.8 bits (63), Expect(2) = 2e-022
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 15 NLYHYDLPLALHEQ 56
NLYHYDLPLAL ++
Sbjct: 505 NLYHYDLPLALEKK 546
>gb|AI162064.1|AI162064 A011P60U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 471
Score = 101 bits (215), Expect(2) = 2e-022
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = +2 / +1
Query: 338 KGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLPL 517
KGK GI LD E + S FH+GWF+ PIV+G YP +MQ I +RLP
Sbjct: 55 KGKDGIXLDLFITETXTRSKXDNLAAQRARDFHIGWFIHPIVYGEYPXTMQNIVGNRLPQ 234
Query: 518 FSDEEARMAKGSIDYVGINHYTSF 589
F+ EE +M KGS+D+VGIN YT+F
Sbjct: 235 FTKEEVKMVKGSMDFVGINQYTTF 306
Score = 23.5 bits (45), Expect(2) = 2e-022
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 314 RDKYQLHQKGKIG 352
R+KYQ QKG++G
Sbjct: 32 REKYQEKQKGRMG 70
>gb|BU866443.1|BU866443 S066G12 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 745
Score = 102 bits (217), Expect = 2e-021
Identities = 39/84 (46%), Positives = 54/84 (64%)
Frame = +2 / +2
Query: 335 QKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLP 514
Q G+IGI LD WYEP SD+ F +GWFLDP+ G+YP SM+++ +RLP
Sbjct: 17 QGGQIGITLDSKWYEPISDAEEDKDAAQRAMDFGIGWFLDPLFLGKYPLSMKKLVGERLP 196
Query: 515 LFSDEEARMAKGSIDYVGINHYTS 586
S +++ GS+D+VGINHYT+
Sbjct: 197 EISQGMSKLLVGSLDFVGINHYTA 268
>gb|DN498729.1|DN498729 S066G12.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S066G12 5', mRNA sequence
Length = 774
Score = 102 bits (217), Expect = 2e-021
Identities = 39/84 (46%), Positives = 54/84 (64%)
Frame = +2 / +2
Query: 335 QKGKIGILLDFVWYEPFSDSNXXXXXXXXXXXFHLGWFLDPIVHGRYPYSMQEIAKDRLP 514
Q G+IGI LD WYEP SD+ F +GWFLDP+ G+YP SM+++ +RLP
Sbjct: 38 QGGQIGITLDSKWYEPISDAEEDKDAAQRAMDFGIGWFLDPLFLGKYPLSMKKLVGERLP 217
Query: 515 LFSDEEARMAKGSIDYVGINHYTS 586
S +++ GS+D+VGINHYT+
Sbjct: 218 EISQGMSKLLVGSLDFVGINHYTA 289
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 326,653,550
Number of Sequences: 369679
Number of extensions: 4786689
Number of successful extensions: 65815
Number of sequences better than 1.0e-020: 29
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7195541073
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)