TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA librar... 114 4e-025
gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library P... 114 4e-025
gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library... 114 4e-025
gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Po... 114 4e-025
gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Po... 114 4e-025
gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Po... 114 4e-025
gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Po... 114 4e-025
gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Po... 114 4e-025
gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium... 114 4e-025
gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus ... 114 4e-025
gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Popul... 114 4e-025
gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus... 114 4e-025
gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated wit... 114 4e-025
gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Popu... 114 4e-025
gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremonti... 114 4e-025
gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cD... 111 3e-024
gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in... 111 3e-024
gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium... 109 2e-023
gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cD... 107 6e-023
gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus tricho... 107 6e-023
gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid lib... 106 1e-022
gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library... 105 2e-022
gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA librar... 104 5e-022
gb|DT480982.1|DT480982 WS02530.BR_I12 PT-MB-N-A-15 Populus ... 103 1e-021
gb|DT486279.1|DT486279 WS02530.B21_I12 PT-MB-N-A-15 Populus... 103 1e-021
gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus tri... 102 1e-021
gb|AJ777572.1|AJ777572 AJ777572 Populus euphratica root 3-6... 101 3e-021
gb|DV464201.1|DV464201 MTUNUL1.P24.D07 NUL Populus fremonti... 101 4e-021
gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA librar... 100 5e-021
gb|BU894661.1|BU894661 X012H09 Populus wood cDNA library Po... 100 5e-021
>gb|BI127370.1|BI127370 G059P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 502
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 227 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 394
>gb|BU812023.1|BU812023 UL91TD02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 616
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 263 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 430
>gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 610
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 366 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 533
>gb|BU894173.1|BU894173 X003H07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 618
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 307 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 474
>gb|BU894478.1|BU894478 X010A02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 650
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 39 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 206
>gb|BU896276.1|BU896276 X038C04 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 679
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 26 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 193
>gb|BU896297.1|BU896297 X038E11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 666
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 26 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 193
>gb|BU898140.1|BU898140 X075D09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 623
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 100 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 267
>gb|CK097248.1|CK097248 UB44DPH02.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB44DPH02 3', mRNA sequence
Length = 762
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 494 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 327
>gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_O22 3', mRNA sequence
Length = 875
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 629 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 462
>gb|CV267224.1|CV267224 WS02031.B21_C18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_C18 3', mRNA sequence
Length = 960
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 721 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 554
>gb|CV274847.1|CV274847 WS0174.B21.1_J06 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_J06 3', mRNA sequence
Length = 849
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 710 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 543
>gb|CX171314.1|CX171314 G11_69-94_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 555
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 63 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 230
>gb|DT516220.1|DT516220 WS02430.B21_L23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_L23 3', mRNA sequence
Length = 910
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 734 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 567
>gb|DV464515.1|DV464515 MTUNUL1.P28.E03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 830
Score = 114 bits (244), Expect = 4e-025
Identities = 43/56 (76%), Positives = 48/56 (85%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 705 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 538
>gb|BU819274.1|BU819274 UA41BPG08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 627
Score = 111 bits (237), Expect = 3e-024
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 5 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 172
>gb|AJ772440.1|AJ772440 AJ772440 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700006E12F1, mRNA sequence
Length = 418
Score = 111 bits (237), Expect = 3e-024
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 83 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 250
>gb|CK096964.1|CK096964 UB34DPA12.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB34DPA12 3', mRNA sequence
Length = 646
Score = 109 bits (232), Expect = 2e-023
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +1 / -2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
G VVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NLCY
Sbjct: 597 GAVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCY 430
>gb|BU818866.1|BU818866 UA35CPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 503
Score = 107 bits (228), Expect = 6e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++ HA +GTSRPTHYHVL D+N FTAD LQ+LT NLCY
Sbjct: 101 GTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFTADGLQTLTNNLCY 268
>gb|CN524305.1|CN524305 GQ015M13.T3_E09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_E09 5', mRNA sequence
Length = 849
Score = 107 bits (228), Expect = 6e-023
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++ HA +GTSRPTHYHVL D+N FTAD LQ+LT NLCY
Sbjct: 288 GTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFTADGLQTLTNNLCY 455
>gb|CK100043.1|CK100043 B006P29.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B006P29 5', mRNA sequence
Length = 475
Score = 106 bits (226), Expect = 1e-022
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD +QSLT NL Y
Sbjct: 223 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLWY 390
>gb|CK117051.1|CK117051 B024P66 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B024P66 5', mRNA sequence
Length = 276
Score = 105 bits (224), Expect = 2e-022
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYN 168
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT N
Sbjct: 117 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNN 275
>gb|DN488212.1|DN488212 R041G07.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R041G07 3', mRNA sequence
Length = 811
Score = 104 bits (221), Expect = 5e-022
Identities = 39/56 (69%), Positives = 46/56 (82%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD ICHPTEFDF++ HA +GTSRPTHYHVL D+N F++D LQ+LT NLCY
Sbjct: 632 GTVVDTTICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSSDGLQTLTNNLCY 465
>gb|DT480982.1|DT480982 WS02530.BR_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_I12 5', mRNA sequence
Length = 733
Score = 103 bits (219), Expect = 1e-021
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = +1 / +3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYHVL D+N+FT+D LQ L YNLCY
Sbjct: 33 GTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCY 200
>gb|DT486279.1|DT486279 WS02530.B21_I12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_I12 3', mRNA sequence
Length = 733
Score = 103 bits (219), Expect = 1e-021
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = +1 / -3
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTSRPTHYHVL D+N+FT+D LQ L YNLCY
Sbjct: 701 GTVVDTVITHPREFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCY 534
>gb|CV227387.1|CV227387 WS0167.B21_A17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_A17
3', mRNA sequence
Length = 709
Score = 102 bits (218), Expect = 1e-021
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = +1 / +3
Query: 31 ICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 6 ICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 152
>gb|AJ777572.1|AJ777572 AJ777572 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400030C07F1, mRNA sequence
Length = 687
Score = 101 bits (216), Expect = 3e-021
Identities = 38/56 (67%), Positives = 44/56 (78%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
GTVVD I HP EFDF++C H KGTS+PTHYHVL D+N+FT+D LQ L YNLCY
Sbjct: 488 GTVVDTVITHPKEFDFYLCSHWGVKGTSKPTHYHVLWDENQFTSDELQKLVYNLCY 655
>gb|DV464201.1|DV464201 MTUNUL1.P24.D07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 867
Score = 101 bits (215), Expect = 4e-021
Identities = 38/50 (76%), Positives = 43/50 (86%)
Frame = +1 / +1
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSL 159
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+NKFTAD LQSL
Sbjct: 718 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSL 867
>gb|BU891188.1|BU891188 P047A12 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 494
Score = 100 bits (214), Expect = 5e-021
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = +1 / +3
Query: 25 NNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLTYNLCY 177
+ ICHPTEF+F++C HA +GTSRP HYHVL D+NKFTAD LQSLT NLCY
Sbjct: 3 SKICHPTEFNFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCY 155
>gb|BU894661.1|BU894661 X012H09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 814
Score = 100 bits (214), Expect = 5e-021
Identities = 38/51 (74%), Positives = 43/51 (84%)
Frame = +1 / +2
Query: 10 GTVVDNNICHPTEFDFFVCIHARAKGTSRPTHYHVLRDDNKFTADALQSLT 162
GTVVD+ ICHPTEFDF++C HA +GTSRP HYHVL D+N FTAD LQSLT
Sbjct: 632 GTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENMFTADGLQSLT 784
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 290,673,223
Number of Sequences: 369679
Number of extensions: 4117728
Number of successful extensions: 60650
Number of sequences better than 1.0e-020: 36
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6069708116
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)