TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665460.2.1
(649 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6... 110 1e-023
gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Popu... 100 6e-023
gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Popu... 100 6e-023
gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus ... 100 6e-023
gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus tri... 100 6e-023
gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Popul... 100 6e-023
gb|CV249464.1|CV249464 WS01124.B21_D22 PT-P-FL-A-2 Populus ... 97 4e-022
gb|CV251513.1|CV251513 WS0117.B21_E21 PT-P-FL-A-2 Populus t... 95 2e-021
>gb|AJ777287.1|AJ777287 AJ777287 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400025G06F1, mRNA sequence
Length = 644
Score = 110 bits (234), Expect = 1e-023
Identities = 41/83 (49%), Positives = 61/83 (73%)
Frame = +2 / +2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
L +L+L+N+ ++ C+PPE+G L KL VLD+S I G +P ++ + LEQL++AHN +
Sbjct: 395 LEELLLINTNLTGCLPPEVGYLYKLRVLDVSQNKIVGPIPYSLSGLAHLEQLNLAHNLMT 574
Query: 182 GEIPESVCGLPHLKNFTYSYNFF 250
G +P+ VC LP+L NFT+SYNFF
Sbjct: 575 GIVPQGVCILPNLANFTFSYNFF 643
>gb|DT511324.1|DT511324 WS02416.B21_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 3', mRNA sequence
Length = 886
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 580 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 401
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 400 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 302
Score = 27.2 bits (53), Expect(2) = 6e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -1
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 268 NCIPGRDMQRPQPEC 224
>gb|DT519122.1|DT519122 WS02440.B21_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_F15 3', mRNA sequence
Length = 886
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2 / -1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 580 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 401
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 400 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 302
Score = 27.2 bits (53), Expect(2) = 6e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -1
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 268 NCIPGRDMQRPQPEC 224
>gb|CV245618.1|CV245618 WS0257.B21_O19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_O19 3', mRNA sequence
Length = 878
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 624 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 445
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 444 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 346
Score = 27.2 bits (53), Expect(2) = 6e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 312 NCIPGRDMQRPQPEC 268
>gb|CV227579.1|CV227579 WS0167.B21_J13 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_J13
3', mRNA sequence
Length = 871
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2 / -3
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 590 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 411
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 410 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 312
Score = 27.2 bits (53), Expect(2) = 6e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -3
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 278 NCIPGRDMQRPQPEC 234
>gb|DT506655.1|DT506655 WS02416.BR_C14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_C14 5', mRNA sequence
Length = 837
Score = 100 bits (212), Expect(2) = 6e-023
Identities = 38/93 (40%), Positives = 61/93 (65%)
Frame = +2 / +1
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 307 VKEILFLNNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 486
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 487 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 585
Score = 27.2 bits (53), Expect(2) = 6e-023
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / +1
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 619 NCIPGRDMQRPQPEC 663
>gb|CV249464.1|CV249464 WS01124.B21_D22 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_D22 3', mRNA sequence
Length = 657
Score = 97.3 bits (206), Expect(2) = 4e-022
Identities = 37/93 (39%), Positives = 60/93 (64%)
Frame = +2 / -2
Query: 2 LNDLILLNSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLA 181
+ +++ LN+ ++ CIP +G ++ V D+SF S+ G LPDTI + +E L++AHN+L+
Sbjct: 596 VKEILFLNNQLTGCIPQGVGLFTEMQVSDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLS 417
Query: 182 GEIPESVCGLPHLKNFTYSYNFFCGEPHRCLEV 280
G++PE VC L L N T + NFF G C ++
Sbjct: 416 GQVPELVCSLRSLVNLTVASNFFSGFSQDCAKL 318
Score = 27.2 bits (53), Expect(2) = 4e-022
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -2
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 284 NCIPGRDMQRPQPEC 240
>gb|CV251513.1|CV251513 WS0117.B21_E21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_E21 3', mRNA sequence
Length = 568
Score = 95.0 bits (201), Expect(2) = 2e-021
Identities = 37/86 (43%), Positives = 56/86 (65%)
Frame = +2 / -2
Query: 23 NSGISSCIPPEIGKLAKLXVLDLSFTSIAGTLPDTIGNMRALEQLDVAHNRLAGEIPESV 202
N+ ++ CIP +G ++ VLD+SF S+ G LPDTI + +E L++AHN+L+G++PE V
Sbjct: 567 NNQLTGCIPQGVGLFTEMQVLDVSFNSLMGHLPDTISCLNQIEVLNLAHNKLSGQVPELV 388
Query: 203 CGLPHLKNFTYSYNFFCGEPHRCLEV 280
C L L N T + NFF G C ++
Sbjct: 387 CSLRSLVNLTVASNFFSGFSQDCAKL 310
Score = 27.2 bits (53), Expect(2) = 2e-021
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2 / -2
Query: 302 NCIAGRPDQRPGEEC 346
NCI GR QRP EC
Sbjct: 276 NCIPGRDMQRPQPEC 232
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 236,502,346
Number of Sequences: 369679
Number of extensions: 3261717
Number of successful extensions: 184673
Number of sequences better than 1.0e-020: 8
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8027678476
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)