TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal libra... 193 4e-049
gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Popul... 193 4e-049
gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus t... 193 4e-049
gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Popul... 193 4e-049
gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal libra... 192 1e-048
gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus tri... 192 1e-048
gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus... 192 1e-048
gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus t... 192 1e-048
gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus... 192 1e-048
gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus ... 192 1e-048
gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Popu... 192 1e-048
gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Pop... 192 1e-048
gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cD... 190 6e-048
gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambiu... 188 1e-047
gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library ... 188 2e-047
gb|DT470458.1|DT470458 WS01920.C21_O19 PT-DX-N-A-10 Populus... 183 5e-046
gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambiu... 178 2e-044
gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus... 149 4e-044
gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus... 170 5e-042
gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Popu... 149 1e-035
>gb|CV130438.1|CV130438 B9P01a09 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 622
Score = 193 bits (417), Expect = 4e-049
Identities = 81/103 (78%), Positives = 91/103 (88%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 303 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 482
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H+KNP VM KIQKLV AGIVQM+*
Sbjct: 483 PVMRQVLVDFQENPKAAQEHMKNPMVMSKIQKLVHAGIVQMR* 611
Score = 68.9 bits (144), Expect(2) = 2e-021
Identities = 33/56 (58%), Positives = 36/56 (64%)
Frame = +3 / -1
Query: 168 PATVYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
P +Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 622 P*KIYLIWTIPAWTSF*ILLITIGFFMCS*AALGFSWKSTNTCLMTGSERMF*ISG 455
Score = 52.8 bits (109), Expect(2) = 2e-021
Identities = 20/26 (76%), Positives = 22/26 (84%)
Frame = +3 / -1
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+ *VS
Sbjct: 382 CSTHLLTPSSKSWLWGSCFRPSW*VS 305
>gb|CV254379.1|CV254379 WS0241.B21_B03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_B03 3', mRNA sequence
Length = 755
Score = 193 bits (417), Expect = 4e-049
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P+NQELLDGVRRCVEQ+ KASRG+LS EELKERQ K MQDPEIQNIL+D
Sbjct: 475 LETYQEGLKHDPRNQELLDGVRRCVEQLNKASRGDLSPEELKERQAKGMQDPEIQNILSD 296
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP++AQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 295 PVMRQVLVDFQENPKSAQEHTKNPMVMSKIQKLVQAGIVQMR* 167
Score = 64.3 bits (134), Expect(2) = 2e-021
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = +3 / +3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ A GFS +S TC M GS RMF ISG
Sbjct: 165 IYLIWTIPAWTSF*ILLITIGFFVCS*ADLGFSWKSTNTCLMTGSERMF*ISG 323
Score = 57.4 bits (119), Expect(2) = 2e-021
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / +3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPS+NSWF G CFRP+**VS
Sbjct: 396 CSTHLLTPSNNSWFRGSCFRPS**VS 473
>gb|CV277459.1|CV277459 WS0143.B21_K09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_K09 3', mRNA sequence
Length = 845
Score = 193 bits (417), Expect = 4e-049
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P+NQELLDGVRRCVEQ+ KASRG+LS EELKERQ K MQDPEIQNIL+D
Sbjct: 469 LETYQEGLKHDPRNQELLDGVRRCVEQLNKASRGDLSPEELKERQAKGMQDPEIQNILSD 290
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP++AQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 289 PVMRQVLVDFQENPKSAQEHTKNPMVMSKIQKLVQAGIVQMR* 161
Score = 64.3 bits (134), Expect(2) = 2e-021
Identities = 31/53 (58%), Positives = 34/53 (64%)
Frame = +3 / +3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ A GFS +S TC M GS RMF ISG
Sbjct: 159 IYLIWTIPAWTSF*ILLITIGFFVCS*ADLGFSWKSTNTCLMTGSERMF*ISG 317
Score = 57.4 bits (119), Expect(2) = 2e-021
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +3 / +3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPS+NSWF G CFRP+**VS
Sbjct: 390 CSTHLLTPSNNSWFRGSCFRPS**VS 467
>gb|DT521656.1|DT521656 WS02034.B21_O01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_O01 3', mRNA sequence
Length = 510
Score = 193 bits (417), Expect = 4e-049
Identities = 81/103 (78%), Positives = 91/103 (88%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 484 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 305
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H+KNP VM KIQKLV AGIVQM+*
Sbjct: 304 PVMRQVLVDFQENPKAAQEHMKNPMVMSKIQKLVHAGIVQMR* 176
Score = 68.0 bits (142), Expect(2) = 6e-022
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 174 IYLIWTIPAWTSF*ILLITIGFFMCS*AALGFSWKSTNTCLMTGSERMF*ISG 332
Score = 55.1 bits (114), Expect(2) = 6e-022
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / +3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 405 CSTHLLTPSSKSWLWGSCFRPS**VS 482
>gb|CK318323.1|CK318323 B9P08a06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 546
Score = 192 bits (414), Expect = 1e-048
Identities = 81/107 (75%), Positives = 92/107 (85%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 92 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 271
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAG 167
P+M+QVL D QE+P+AAQ H+KNP VM KIQKLV AGIVQM+* G
Sbjct: 272 PVMRQVLVDFQESPKAAQEHMKNPMVMSKIQKLVHAGIVQMR*IFYG 412
Score = 66.1 bits (138), Expect(2) = 2e-021
Identities = 32/56 (57%), Positives = 35/56 (62%)
Frame = +3 / -1
Query: 168 PATVYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
P +Y I TIPA TSF I IT GF C+ AA G S +S TC M GS RMF ISG
Sbjct: 411 P*KIYLIWTIPAWTSF*ILLITIGFFMCS*AALGLSWKSTNTCLMTGSERMF*ISG 244
Score = 55.1 bits (114), Expect(2) = 2e-021
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / -1
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 171 CSTHLLTPSSKSWLWGSCFRPS**VS 94
>gb|CV225340.1|CV225340 WS0161.B21_B15 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_B15
3', mRNA sequence
Length = 548
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 471 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 292
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 291 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 163
Score = 67.0 bits (140), Expect(2) = 3e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +2
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 161 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 319
Score = 53.8 bits (111), Expect(2) = 3e-021
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CF+P+**VS
Sbjct: 392 CSTHLLTPSSKSWLWGSCFKPS**VS 469
>gb|CV234148.1|CV234148 WS01213.B21_M23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_M23 3', mRNA sequence
Length = 736
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 467 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 288
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 287 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 159
Score = 67.0 bits (140), Expect(2) = 1e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 157 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 315
Score = 55.1 bits (114), Expect(2) = 1e-021
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / +1
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 388 CSTHLLTPSSKSWLWGSCFRPS**VS 465
>gb|CV253076.1|CV253076 PX0019.B21_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 3', mRNA sequence
Length = 518
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 467 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 288
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 287 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 159
Score = 67.0 bits (140), Expect(2) = 1e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 157 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 315
Score = 55.1 bits (114), Expect(2) = 1e-021
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / +1
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 388 CSTHLLTPSSKSWLWGSCFRPS**VS 465
>gb|DT477045.1|DT477045 WS01231.B21_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_M11 3', mRNA sequence
Length = 831
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 466 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 287
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 286 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 158
Score = 67.0 bits (140), Expect(2) = 3e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 156 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 314
Score = 53.8 bits (111), Expect(2) = 3e-021
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +3 / +3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CF+P+**VS
Sbjct: 387 CSTHLLTPSSKSWLWGSCFKPS**VS 464
>gb|DT500630.1|DT500630 PX0019.BR.1_D13 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_D13 5', mRNA sequence
Length = 472
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 51 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 230
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 231 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 359
Score = 67.0 bits (140), Expect(2) = 9e-022
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / -1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 361 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 203
Score = 55.1 bits (114), Expect(2) = 9e-022
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / -1
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 130 CSTHLLTPSSKSWLWGSCFRPS**VS 53
>gb|DT514749.1|DT514749 WS02425.B21_K20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K20 3', mRNA sequence
Length = 908
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / -3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 486 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 307
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 306 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 178
Score = 67.0 bits (140), Expect(2) = 1e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +2
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 176 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 334
Score = 55.1 bits (114), Expect(2) = 1e-021
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / +2
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 407 CSTHLLTPSSKSWLWGSCFRPS**VS 484
>gb|DT524020.1|DT524020 WS02041.C21.1_E23 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_E23 3', mRNA sequence
Length = 607
Score = 192 bits (414), Expect = 1e-048
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+D
Sbjct: 151 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSD 330
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 331 PVMRQVLVDFQENPKAAQEHTKNPMVMSKIQKLVHAGIVQMR* 459
Score = 67.0 bits (140), Expect(2) = 1e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / -3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 461 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 303
Score = 55.1 bits (114), Expect(2) = 1e-021
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / -3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 230 CSTHLLTPSSKSWLWGSCFRPS**VS 153
>gb|BU819462.1|BU819462 UA43BPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 561
Score = 190 bits (409), Expect = 6e-048
Identities = 80/103 (77%), Positives = 89/103 (86%)
Frame = -1 / +3
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P+NQELLDGVRRC+EQ KASRG+LS EELKERQ K MQDPEIQNIL+D
Sbjct: 180 LETYQEGLKHDPRNQELLDGVRRCLEQRNKASRGDLSPEELKERQAKGMQDPEIQNILSD 359
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP++AQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 360 PVMRQVLVDFQENPKSAQEHTKNPMVMSKIQKLVQAGIVQMR* 488
>gb|CK105902.1|CK105902 UA43BPH06.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 5', mRNA sequence
Length = 500
Score = 188 bits (406), Expect = 1e-047
Identities = 81/112 (72%), Positives = 92/112 (82%)
Frame = -1 / +2
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P+NQELLDGVRRC+EQ KASRG+LS EELKERQ K MQDPEIQNIL+D
Sbjct: 164 LETYQEGLKHDPRNQELLDGVRRCLEQRNKASRGDLSPEELKERQAKGMQDPEIQNILSD 343
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAGMSGLS 152
P+M+QVL D Q+NP++AQ H KNP VM KIQKLV AGIVQM+* G L+
Sbjct: 344 PVMRQVLVDFQKNPKSAQEHTKNPMVMSKIQKLVQAGIVQMR*I*HGKKQLN 499
>gb|CF231391.1|CF231391 PtaC0020H4H0416 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 520
Score = 188 bits (405), Expect = 2e-047
Identities = 79/103 (76%), Positives = 89/103 (86%)
Frame = -1 / +1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KA DPEIQNIL+D
Sbjct: 58 LETYQEGLKHDPHNQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAXXDPEIQNILSD 237
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
P+M+QVL D QENP+AAQ H+KNP VM KIQKLV AGIVQM+*
Sbjct: 238 PVMRQVLVDFQENPKAAQEHMKNPMVMSKIQKLVHAGIVQMR* 366
Score = 68.0 bits (142), Expect(2) = 6e-022
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / -3
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 368 IYLIWTIPAWTSF*ILLITIGFFMCS*AALGFSWKSTNTCLMTGSERMF*ISG 210
Score = 55.1 bits (114), Expect(2) = 6e-022
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +3 / -3
Query: 408 CSTHLLTPSSNSWFFGXCFRPA**VS 485
CSTHLLTPSS SW +G CFRP+**VS
Sbjct: 137 CSTHLLTPSSKSWLWGSCFRPS**VS 60
>gb|DT470458.1|DT470458 WS01920.C21_O19 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_O19 3', mRNA sequence
Length = 464
Score = 183 bits (395), Expect = 5e-046
Identities = 77/97 (79%), Positives = 85/97 (87%)
Frame = -1 / -1
Query: 469 GLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQV 290
GLKH P+NQELLDGVRRCVEQ+ KASRG+LS EELKERQ K MQDPEIQNIL+DP+M+QV
Sbjct: 461 GLKHDPRNQELLDGVRRCVEQLNKASRGDLSPEELKERQAKGMQDPEIQNILSDPVMRQV 282
Query: 289 LTDLQENPRAAQAHLKNPGVMQKIQKLVSAGIVQMK* 179
L D QENP+AAQ H KNP VM KIQKLV AGIVQM+*
Sbjct: 281 LVDFQENPKAAQEHTKNPMVMSKIQKLVQAGIVQMR* 171
Score = 67.0 bits (140), Expect(2) = 2e-021
Identities = 32/53 (60%), Positives = 35/53 (66%)
Frame = +3 / +1
Query: 177 VYFI*TIPALTSFWIFCITPGFLRCACAARGFSCRSVKTCCMIGSVRMFWISG 335
+Y I TIPA TSF I IT GF C+ AA GFS +S TC M GS RMF ISG
Sbjct: 169 IYLIWTIPAWTSF*ILLITIGFFVCS*AALGFSWKSTNTCLMTGSERMF*ISG 327
Score = 53.8 bits (111), Expect(2) = 2e-021
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = +3 / +1
Query: 408 CSTHLLTPSSNSWFFGXCFRP 470
CSTHLLTPSSNSWF G CFRP
Sbjct: 400 CSTHLLTPSSNSWFRGSCFRP 462
>gb|CK096079.1|CK096079 UA43BPH06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA43BPH06 3', mRNA sequence
Length = 563
Score = 178 bits (383), Expect = 2e-044
Identities = 74/97 (76%), Positives = 83/97 (85%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTD 308
LETYQ GLKH P+NQELLDGVRRC+EQ KASRG+LS EELKERQ K MQDPEIQ+IL+D
Sbjct: 383 LETYQEGLKHDPRNQELLDGVRRCLEQRNKASRGDLSPEELKERQAKGMQDPEIQDILSD 204
Query: 307 PIMQQVLTDLQENPRAAQAHLKNPGVMQKIQKLVSAG 197
P+M+QVL D QENP++AQ H KNP VM KIQKLV AG
Sbjct: 203 PVMRQVLVDFQENPKSAQEHTKNPMVMSKIQKLVQAG 93
>gb|CV234277.1|CV234277 WS01214.B21_F10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_F10 3', mRNA sequence
Length = 711
Score = 149 bits (319), Expect(2) = 4e-044
Identities = 63/81 (77%), Positives = 71/81 (87%)
Frame = -1 / -1
Query: 421 RCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLK 242
RCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+DP+M+QVL D QENP+AAQ H K
Sbjct: 402 RCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSDPVMRQVLVDFQENPKAAQEHTK 223
Query: 241 NPGVMQKIQKLVSAGIVQMK* 179
NP VM KIQKLV AGIVQM+*
Sbjct: 222 NPMVMSKIQKLVHAGIVQMR* 160
Score = 79.4 bits (167), Expect(2) = 1e-021
Identities = 41/81 (50%), Positives = 52/81 (64%)
Frame = +2 / +1
Query: 179 LLHLNYPCADELLDLLHHSGVLEVRLRSPRVLLQIRQNLLHDRISQDVLDLRVLHGFVLS 358
L HL+ P D+LL+L HH VL V L RVLL++ Q+L HDRI +DVL+ VLH LS
Sbjct: 160 LSHLDDPSMDKLLNLAHHHRVLCVFLSGLRVLLEVNQHLSHDRI*EDVLNFWVLHCLGLS 339
Query: 359 LFQFLLTEFASARLGDLFNTP 421
L QFL +A L +L +TP
Sbjct: 340 LLQFLRG*VTTAGLIELLHTP 402
Score = 48.7 bits (100), Expect(2) = 4e-044
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -1 / -1
Query: 487 LETYQAGLKHXPKNQELLDGVRR 419
LETYQ GLKH P NQ+LLDGVRR
Sbjct: 552 LETYQEGLKHDPHNQDLLDGVRR 484
Score = 42.8 bits (87), Expect(2) = 1e-021
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3 / +2
Query: 417 HLLTPSSNSWFFGXCFRPA**VS 485
+LLTPSS SW +G CF+P+**VS
Sbjct: 482 YLLTPSSKSWLWGSCFKPS**VS 550
>gb|DT469683.1|DT469683 WS01918.C21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_J03 3', mRNA sequence
Length = 423
Score = 170 bits (366), Expect = 5e-042
Identities = 72/94 (76%), Positives = 82/94 (87%)
Frame = -1 / -1
Query: 448 NQELLDGVRRCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQEN 269
NQ+LLDGVRRCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+DP+M+QVL D QEN
Sbjct: 417 NQDLLDGVRRCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSDPVMRQVLVDFQEN 238
Query: 268 PRAAQAHLKNPGVMQKIQKLVSAGIVQMK*TVAG 167
P+AAQ H+KNP VM KIQKLV AGIVQM+* G
Sbjct: 237 PKAAQEHMKNPMVMSKIQKLVHAGIVQMR*IFYG 136
>gb|DT518027.1|DT518027 WS02435.B21_P21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_P21 3', mRNA sequence
Length = 484
Score = 149 bits (319), Expect = 1e-035
Identities = 63/81 (77%), Positives = 71/81 (87%)
Frame = -1 / -1
Query: 421 RCVEQITKASRGELSEEELKERQNKAMQDPEIQNILTDPIMQQVLTDLQENPRAAQAHLK 242
RCVEQ+ KASRG+L+ EELKERQ KAMQDPEIQNIL+DP+M+QVL D QENP+AAQ H K
Sbjct: 424 RCVEQLNKASRGDLTPEELKERQAKAMQDPEIQNILSDPVMRQVLVDFQENPKAAQEHTK 245
Query: 241 NPGVMQKIQKLVSAGIVQMK* 179
NP VM KIQKLV AGIVQM+*
Sbjct: 244 NPMVMSKIQKLVHAGIVQMR* 182
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 221,790,427
Number of Sequences: 369679
Number of extensions: 2763598
Number of successful extensions: 66042
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 50
effective length of database: 49,318,938
effective search space used: 5474402118
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)