TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.2
(534 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichoca... 253 4e-067
gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Popu... 253 4e-067
gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA libra... 252 2e-066
gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Po... 251 2e-066
gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid lib... 250 4e-066
gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Popu... 249 7e-066
gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus ... 249 7e-066
gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus... 249 7e-066
gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Popul... 249 7e-066
gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Popu... 249 7e-066
gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichoca... 240 4e-063
gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Po... 226 6e-060
gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus sim... 225 2e-058
gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDN... 195 1e-055
gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid lib... 201 2e-051
gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA li... 183 5e-046
gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Po... 162 1e-039
gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Po... 161 3e-039
gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA li... 157 5e-038
gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Po... 137 6e-036
gb|BU884373.1|BU884373 R009G07 Populus root cDNA library Po... 147 6e-035
gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated wit... 138 2e-032
gb|CV272891.1|CV272891 WS0171.B21_A11 PTxD-NR-A-8 Populus t... 111 2e-024
gb|AJ774952.1|AJ774952 AJ774952 Populus euphratica shoot 3-... 105 2e-022
gb|CV265001.1|CV265001 WS02026.B21_B01 PTxN-IB-N-A-11 Popul... 105 2e-022
gb|DT523819.1|DT523819 WS02040.B21_L16 PTxN-IB-N-A-11 Popul... 105 2e-022
gb|CV276058.1|CV276058 WS0178.B21.1_H22 PTxD-NR-A-8 Populus... 105 2e-022
gb|CN524579.1|CN524579 GQ015M13.T3_C09 GQ015 Populus tricho... 104 4e-022
gb|CA926209.1|CA926209 MTU6CR.P11.C07 Aspen root cDNA Libra... 101 3e-021
gb|DT484480.1|DT484480 WS02525.B21_I14 PT-MB-N-A-15 Populus... 101 3e-021
gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Po... 101 4e-021
>gb|CN520678.1|CN520678 GQ0105.B3_G08 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0105_G08 5', mRNA sequence
Length = 757
Score = 253 bits (548), Expect = 4e-067
Identities = 97/120 (80%), Positives = 108/120 (90%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 335 TSMQIWREEVFGPVLCVKTFSTEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 514
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 515 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 694
>gb|DT516698.1|DT516698 WS02432.B21_C13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_C13 3', mRNA sequence
Length = 914
Score = 253 bits (548), Expect = 4e-067
Identities = 97/120 (80%), Positives = 108/120 (90%)
Frame = +2 / -2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 661 TSMQIWREEVFGPVLCVKTFSTEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 482
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 481 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 302
>gb|CF234427.1|CF234427 Ptajxojxo2E10E1010 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 655
Score = 252 bits (544), Expect = 2e-066
Identities = 96/120 (80%), Positives = 108/120 (90%)
Frame = +2 / +1
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 73 TSMQIWREEVFGPVLCVKTFSSEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 252
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 253 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 432
>gb|BU894809.1|BU894809 X015C11 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 652
Score = 251 bits (543), Expect = 2e-066
Identities = 96/120 (80%), Positives = 108/120 (90%)
Frame = +2 / +3
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 18 TSMQIWREEVFGPVLCVKTFSSEDEAIELANDTHYGLRAAVISNDLERCDRVTKAFRAGI 197
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 198 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 377
>gb|CK088015.1|CK088015 A031P29.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A031P29 3', mRNA sequence
Length = 611
Score = 250 bits (541), Expect = 4e-066
Identities = 95/120 (79%), Positives = 108/120 (90%)
Frame = +2 / -2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 562 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 383
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YIS+EPWGWY++PSKL*
Sbjct: 382 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISEEPWGWYQAPSKL* 203
>gb|CV255453.1|CV255453 WS02414.B21_A22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_A22 3', mRNA sequence
Length = 606
Score = 249 bits (539), Expect = 7e-066
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = +2 / -1
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 555 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 376
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 375 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 196
>gb|DT479200.1|DT479200 WS02525.BR_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 5', mRNA sequence
Length = 538
Score = 249 bits (539), Expect = 7e-066
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 104 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 283
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 284 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 463
>gb|DT484312.1|DT484312 WS02525.B21_A24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_A24 3', mRNA sequence
Length = 538
Score = 249 bits (539), Expect = 7e-066
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = +2 / -2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 435 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 256
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 255 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 76
>gb|DT508385.1|DT508385 WS02420.BR_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 5', mRNA sequence
Length = 566
Score = 249 bits (539), Expect = 7e-066
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = +2 / +3
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 57 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 236
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 237 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 416
>gb|DT512995.1|DT512995 WS02420.B21_N08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_N08 3', mRNA sequence
Length = 566
Score = 249 bits (539), Expect = 7e-066
Identities = 95/120 (79%), Positives = 107/120 (89%)
Frame = +2 / -3
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 510 TSMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 331
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 330 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 151
>gb|CN522880.1|CN522880 GQ0122.B3_M23 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_M23 5', mRNA sequence
Length = 562
Score = 240 bits (519), Expect = 4e-063
Identities = 94/120 (78%), Positives = 104/120 (86%)
Frame = +2 / -1
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM REEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI
Sbjct: 484 TSMXXXREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISNDPERCDRVAKAFRAGI 305
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+WVNCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT YIS+EPWGWY++PSKL*
Sbjct: 304 VWVNCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTRYISEEPWGWYQAPSKL* 125
>gb|BU897901.1|BU897901 X071F05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 709
Score = 226 bits (488), Expect(2) = 6e-060
Identities = 86/109 (78%), Positives = 97/109 (88%)
Frame = +2 / +2
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
SM+IWREEVFGPVLCVK FSTEDEAI+LANDT YGL AVIS D ERC R+++ AGI+
Sbjct: 254 SMQIWREEVFGPVLCVKTFSTEDEAIDLANDTHYGLGAAVISDDPERCDRVAKAFRAGIV 433
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YIS+EPW
Sbjct: 434 WINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISEEPW 580
Score = 24.4 bits (47), Expect(2) = 6e-060
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +2 / +3
Query: 335 GWYRSPSKL* 364
GWY++PSKL*
Sbjct: 582 GWYQAPSKL* 611
>gb|DR448910.1|DR448910 qi3 Populus simonii Carr Populus simonii cDNA similar to betaine
aldehyde dehydrogenase (BADH) of Populus simonii Carr,
mRNA sequence
Length = 1491
Score = 225 bits (486), Expect = 2e-058
Identities = 85/116 (73%), Positives = 98/116 (84%)
Frame = +2 / +1
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IW EEVFGPVL VK F+TEDEA+ELANDT YGLA AVIS D +RC+R+++ G
Sbjct: 1141 TSMQIWIEEVFGPVLWVKTFATEDEAVELANDTHYGLAAAVISKDLDRCERMAKAFQVGA 1320
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSP 352
+WVNCSQPCF QAPWGG KRSGFGRELGE G+D YL+VKQVT Y+S EPWGWY+SP
Sbjct: 1321 VWVNCSQPCFYQAPWGGKKRSGFGRELGERGLDIYLNVKQVTRYVSSEPWGWYKSP 1488
>gb|CK102426.1|CK102426 G077P24.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G077P24 5', mRNA sequence
Length = 501
Score = 195 bits (420), Expect(2) = 1e-055
Identities = 74/95 (77%), Positives = 83/95 (87%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 140 TSMQIWREEVFGPVLCVKTFSSEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 319
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNY 289
+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NY
Sbjct: 320 VWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENY 424
Score = 41.4 bits (84), Expect(2) = 1e-055
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2 / +3
Query: 272 GGIDNYLSVKQVTEYISDEPWG 337
G + LSVKQVT+YISDEPWG
Sbjct: 408 GDLKITLSVKQVTQYISDEPWG 473
>gb|CK087727.1|CK087727 A019P11.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A019P11 3', mRNA sequence
Length = 608
Score = 201 bits (434), Expect = 2e-051
Identities = 76/98 (77%), Positives = 87/98 (88%)
Frame = +2 / -1
Query: 71 EDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQPCFCQAPWGGNKRSG 250
EDEAIELAN+T YGL AVIS D ERC R+++ AGI+W+NCSQPCFCQAPWGG KRSG
Sbjct: 599 EDEAIELANNTHYGLGAAVISNDLERCDRVTKAFRAGIVWINCSQPCFCQAPWGGIKRSG 420
Query: 251 FGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
FGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 419 FGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 306
>gb|BU865374.1|BU865374 S052H04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 433
Score = 183 bits (395), Expect = 5e-046
Identities = 71/91 (78%), Positives = 78/91 (85%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 161 TSMQIWREEVFGPVLCVKTFSSEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 340
Query: 185 IWVNCSQPCFCQAPWGGNKRSGFGRELGEGG 277
+W+NCSQPCFCQAPWGG KRSGFGREL E G
Sbjct: 341 VWINCSQPCFCQAPWGGIKRSGFGRELREWG 433
>gb|CX658497.1|CX658497 PO01035G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01035G05 5', mRNA sequence
Length = 504
Score = 162 bits (349), Expect = 1e-039
Identities = 58/76 (76%), Positives = 69/76 (90%)
Frame = +2 / +3
Query: 137 DRERCQRLSEEIDAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEY 316
D ERC R+++ AGI+W+NCSQPCFCQAPWGG KRSGFGRELGE G++NYL+VKQVT+Y
Sbjct: 6 DLERCDRVTKAFRAGIVWINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLNVKQVTQY 185
Query: 317 ISDEPWGWYRSPSKL* 364
ISDEPWGWY+SP+KL*
Sbjct: 186 ISDEPWGWYQSPAKL* 233
>gb|CX656688.1|CX656688 PO02022C11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02022C11 5', mRNA sequence
Length = 366
Score = 161 bits (346), Expect = 3e-039
Identities = 59/78 (75%), Positives = 69/78 (88%)
Frame = +2 / +3
Query: 131 SGDRERCQRLSEEIDAGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVT 310
S D ERC R+++ AGI+W+NCSQPCFCQAPWGG KRSG GRELGE G++NYLSVKQVT
Sbjct: 3 SNDLERCDRVTKASRAGIVWINCSQPCFCQAPWGGIKRSGSGRELGEWGLENYLSVKQVT 182
Query: 311 EYISDEPWGWYRSPSKL* 364
+YISDEPWGWY+SP+KL*
Sbjct: 183 QYISDEPWGWYQSPAKL* 236
>gb|BU862883.1|BU862883 S021B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 422
Score = 157 bits (337), Expect = 5e-038
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGI 184
TSM+IWREEVFGPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+++ AGI
Sbjct: 191 TSMQIWREEVFGPVLCVKTFSSEDEAIELANDTHYGLGAAVISNDLERCDRVTKAFRAGI 370
Query: 185 IWVNCSQPCFCQAPWGG 235
+W+NCSQ CFCQAPWGG
Sbjct: 371 VWINCSQACFCQAPWGG 421
>gb|BU885984.1|BU885984 R038H11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 351
Score = 137 bits (294), Expect(2) = 6e-036
Identities = 49/59 (83%), Positives = 57/59 (96%)
Frame = +2 / +1
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
++NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YIS+EPWGWY++PSKL*
Sbjct: 46 YINCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISEEPWGWYQAPSKL* 222
Score = 32.2 bits (64), Expect(2) = 6e-036
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +2 / +2
Query: 83 IELANDTQYGLAGAVIS 133
I+LANDT YGL AVIS
Sbjct: 2 IDLANDTHYGLGAAVIS 52
>gb|BU884373.1|BU884373 R009G07 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 388
Score = 147 bits (315), Expect = 6e-035
Identities = 52/63 (82%), Positives = 60/63 (95%)
Frame = +2 / +1
Query: 176 AGIIWVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPS 355
AGI+W+NC QPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YIS+EPWGWY++PS
Sbjct: 13 AGIVWINCPQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISEEPWGWYQAPS 192
Query: 356 KL* 364
KL*
Sbjct: 193 KL* 201
>gb|CX182528.1|CX182528 H02_45-85_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 478
Score = 138 bits (296), Expect = 2e-032
Identities = 50/58 (86%), Positives = 56/58 (96%)
Frame = +2 / +1
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
+NCSQPCFCQAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 31 INCSQPCFCQAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 204
>gb|CV272891.1|CV272891 WS0171.B21_A11 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_A11 3', mRNA sequence
Length = 464
Score = 111 bits (238), Expect = 2e-024
Identities = 42/49 (85%), Positives = 47/49 (95%)
Frame = +2 / +3
Query: 218 QAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPWGWYRSPSKL* 364
QAPWGG KRSGFGRELGE G++NYLSVKQVT+YISDEPWGWY+SP+KL*
Sbjct: 3 QAPWGGIKRSGFGRELGEWGLENYLSVKQVTQYISDEPWGWYQSPAKL* 149
>gb|AJ774952.1|AJ774952 AJ774952 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300026B08F1, mRNA sequence
Length = 566
Score = 105 bits (225), Expect = 2e-022
Identities = 45/108 (41%), Positives = 64/108 (59%)
Frame = +2 / +3
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M I +E+FGPV+ + +F T DEAI+ AN+T+YGLA +++ + + +S I AG IW
Sbjct: 42 MMIATDEIFGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIW 221
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC +GG K SGFGR LG + +L VK V I + PW
Sbjct: 222 INCYFAFDNDCSYGGYKMSGFGRHLGMEALHKFLQVKSVVTPIYNSPW 365
>gb|CV265001.1|CV265001 WS02026.B21_B01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_B01 3', mRNA sequence
Length = 907
Score = 105 bits (225), Expect = 2e-022
Identities = 45/108 (41%), Positives = 64/108 (59%)
Frame = +2 / -1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M I +E+FGPV+ + +F T DEAI+ AN+T+YGLA +++ + + +S I AG IW
Sbjct: 586 MMIATDEIFGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIW 407
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC +GG K SGFGR LG + +L VK V I + PW
Sbjct: 406 INCYFAFDNDCSYGGYKMSGFGRHLGMEALHKFLQVKSVVTPIYNSPW 263
>gb|DT523819.1|DT523819 WS02040.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_L16 3', mRNA sequence
Length = 843
Score = 105 bits (225), Expect = 2e-022
Identities = 45/108 (41%), Positives = 64/108 (59%)
Frame = +2 / -1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M I +E+FGPV+ + +F T DEAI+ AN+T+YGLA +++ + + +S I AG IW
Sbjct: 504 MMIATDEIFGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIW 325
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC +GG K SGFGR LG + +L VK V I + PW
Sbjct: 324 INCYFAFDNDCSYGGYKMSGFGRHLGMEALHKFLQVKSVVTPIYNSPW 181
>gb|CV276058.1|CV276058 WS0178.B21.1_H22 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0178_H22 3', mRNA sequence
Length = 831
Score = 105 bits (224), Expect = 2e-022
Identities = 45/108 (41%), Positives = 64/108 (59%)
Frame = +2 / -2
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M I +E+FGPV+ + +F T DEAI+ AN+T+YGLA +++ + + +S I AG IW
Sbjct: 611 MMIATDEIFGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIW 432
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC +GG K SGFGR LG + +L VK V I + PW
Sbjct: 431 INCYFAFDNDCSYGGYKMSGFGRHLGIEALHKFLQVKSVVTPIYNSPW 288
>gb|CN524579.1|CN524579 GQ015M13.T3_C09 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_C09 5', mRNA sequence
Length = 510
Score = 104 bits (222), Expect = 4e-022
Identities = 43/103 (41%), Positives = 62/103 (60%)
Frame = +2 / +3
Query: 26 EEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIWVNCSQ 205
+E+FGPV+ + +F T DEAI+ AN+T+YGLA +++ + + +S I AG IW+NC
Sbjct: 6 DEIFGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIWINCYF 185
Query: 206 PCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+GG K SGFGR LG + +L VK V I + PW
Sbjct: 186 AFDNDCSYGGYKMSGFGRHLGMEALHKFLQVKSVVTPIYNSPW 314
>gb|CA926209.1|CA926209 MTU6CR.P11.C07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 550
Score = 101 bits (216), Expect = 3e-021
Identities = 43/108 (39%), Positives = 63/108 (58%)
Frame = +2 / +1
Query: 11 MEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGIIW 190
M I +E+FGPV+ + +F T +EAI+ AN+T+YGLA +++ + + +S I AG IW
Sbjct: 109 MMIATDEIFGPVMSLMKFKTIEEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIW 288
Query: 191 VNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVTEYISDEPW 334
+NC +GG K SGFGR LG + +L K V I + PW
Sbjct: 289 INCYFAFDHDCSYGGYKMSGFGRHLGIEALHKFLQAKSVVTPIYNSPW 432
>gb|DT484480.1|DT484480 WS02525.B21_I14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_I14 3', mRNA sequence
Length = 761
Score = 101 bits (216), Expect = 3e-021
Identities = 43/101 (42%), Positives = 62/101 (61%)
Frame = +2 / -3
Query: 8 SMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRLSEEIDAGII 187
+M I +E+FGPV + +F T DE IE AN+T YGLA +++ + + S ++AG +
Sbjct: 456 NMSICTDEIFGPVQSILKFKTLDEIIERANNTSYGLAAGILTKNIDNALVFSNAVEAGSV 277
Query: 188 WVNCSQPCFCQAPWGGNKRSGFGRELGEGGIDNYLSVKQVT 310
WVNC QAP+GG K+SG GRE GE ++ Y K V+
Sbjct: 276 WVNCYLAITLQAPFGGYKQSGLGREGGEEVLELYQETKTVS 154
>gb|CX657151.1|CX657151 PO02030H12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030H12 5', mRNA sequence
Length = 352
Score = 101 bits (215), Expect = 4e-021
Identities = 41/52 (78%), Positives = 44/52 (84%)
Frame = +2 / +2
Query: 5 TSMEIWREEVFGPVLCVKEFSTEDEAIELANDTQYGLAGAVISGDRERCQRL 160
TSM+IWREEV GPVLCVK FS+EDEAIELANDT YGL AVIS D ERC R+
Sbjct: 197 TSMQIWREEVLGPVLCVKTFSSEDEAIELANDTHYGLGAAVISNDLERCDRV 352
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 261,096,872
Number of Sequences: 369679
Number of extensions: 3413903
Number of successful extensions: 57704
Number of sequences better than 1.0e-020: 38
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6167606634
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)