TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 146 2e-034
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 146 2e-034
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 146 2e-034
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 145 2e-034
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 143 1e-033
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 125 4e-028
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 125 4e-028
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 125 4e-028
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 125 4e-028
gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated wit... 125 4e-028
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 125 4e-028
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 125 4e-028
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 125 4e-028
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 125 4e-028
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 125 4e-028
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 125 4e-028
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 124 7e-028
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 122 2e-027
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 122 3e-027
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 117 6e-026
gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA librar... 115 3e-025
gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library ... 113 1e-024
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 112 2e-024
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 71 6e-023
gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus ... 103 1e-021
gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Popul... 101 5e-021
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 146 bits (313), Expect = 2e-034
Identities = 50/97 (51%), Positives = 72/97 (74%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W +L + WK +LP G + F+ RT PLD RWHVLGLG++ ++ + E+E A+VIH
Sbjct: 675 YHTWQKLNHDRQLWKLGTLPPGLITFWKRTHPLDRRWHVLGLGYNPNVSQREIERAAVIH 496
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
Y+G +KPWLEI IPKYR W +Y++YD+ +L++CNI+
Sbjct: 495 YNGNMKPWLEIGIPKYRSNWAKYVDYDHAYLRECNIN 385
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 146 bits (313), Expect = 2e-034
Identities = 48/96 (50%), Positives = 70/96 (72%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FYN T PL WHVLGLG++ SI R E+E+A+V+H
Sbjct: 692 YHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYNPSIDRSEIENAAVVH 513
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW +Y+ YD+P+L+ CN+
Sbjct: 512 YNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 405
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 146 bits (313), Expect = 2e-034
Identities = 48/96 (50%), Positives = 70/96 (72%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FYN T PL WHVLGLG++ SI R E+E+A+V+H
Sbjct: 693 YHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYNPSIDRSEIENAAVVH 514
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW +Y+ YD+P+L+ CN+
Sbjct: 513 YNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 406
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 145 bits (312), Expect = 2e-034
Identities = 47/96 (48%), Positives = 70/96 (72%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH+W + + WK +LP G + FYN T PL WHVLGLG++ S+ R E+E+A+V+H
Sbjct: 667 YHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYNPSVDRSEIENAAVVH 488
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G +KPWLE+++ KYR YW +Y+ YD+P+L+ CN+
Sbjct: 487 YNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 380
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 143 bits (307), Expect = 1e-033
Identities = 48/96 (50%), Positives = 69/96 (71%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + WK SLP G + FYN T PLD WHVLGLG+D ++ + E+E+A+V+H
Sbjct: 421 YHHWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVH 600
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G KP L++++ KY+ YW+R++ YDNP+L QC+I
Sbjct: 601 YNGNYKPXLDLAVAKYKPYWSRFVQYDNPYLHQCDI 708
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 590 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 411
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 410 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 306
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 505 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 326
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 325 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 221
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 564 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 385
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 384 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 280
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 575 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 396
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 395 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 291
>gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 488
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 456 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 277
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 276 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 172
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / +3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 66 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 245
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 246 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 350
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 175 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 354
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 355 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 459
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / +2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 92 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 271
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 272 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 376
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 574 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 395
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 394 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 574 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 395
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 394 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 125 bits (267), Expect = 4e-028
Identities = 41/95 (43%), Positives = 67/95 (70%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H
Sbjct: 574 YHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVH 395
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 394 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 124 bits (265), Expect = 7e-028
Identities = 43/95 (45%), Positives = 63/95 (66%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + WK +LP G + FY+ T LD WHVLGLG++ SI DE+ +A+VIH
Sbjct: 503 YHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIH 324
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
Y+G +KPWL+I++ +Y+ W +Y++ D +Q CN
Sbjct: 323 YNGNMKPWLDIAMNQYKNLWTKYVDNDMEFVQMCN 219
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 122 bits (261), Expect = 2e-027
Identities = 42/96 (43%), Positives = 63/96 (65%)
Frame = -3 / -3
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L + WK +LP G + FY+ T LD WHVLGLG++ SI DE+ +A+VIH
Sbjct: 578 YHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIH 399
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
Y+G + PWL+I++ +Y+ W +Y++ D +Q CN+
Sbjct: 398 YNGHMTPWLDIAMTQYKNLWTKYVDNDMEFVQMCNL 291
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 122 bits (260), Expect = 3e-027
Identities = 40/95 (42%), Positives = 67/95 (70%)
Frame = -3 / +1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W L ++ WK +LP G + FY+ T PL+ WHVLGLG++ SI DE++SA+V+H
Sbjct: 43 YHYWQNLNENRTLWKLGTLPPGLIKFYSTTKPLNKSWHVLGLGYNPSISMDEIQSAAVVH 222
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
++G +KPWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 223 FNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 327
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 117 bits (251), Expect = 6e-026
Identities = 42/96 (43%), Positives = 62/96 (64%)
Frame = -3 / -1
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIH 506
YH W + + WK +LP + FY T LD RWHVLGLG+D +I ++SA+VIH
Sbjct: 667 YHYWQEQNGDQMLWKLGTLPPALLAFYGLTETLDRRWHVLGLGYDMNIDDRLIDSAAVIH 488
Query: 505 YSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNI 398
++G +KPWL+++I +Y+ W RY+N +P+ Q C I
Sbjct: 487 FNGNMKPWLKLAIGRYKPLWERYINQSHPYYQDCVI 380
>gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 115 bits (246), Expect = 3e-025
Identities = 38/89 (42%), Positives = 64/89 (71%)
Frame = -3 / +3
Query: 667 LGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLK 488
L ++ WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H++G +K
Sbjct: 9 LNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 188
Query: 487 PWLEISIPKYRGYWNRYLNYDNPHLQQCN 401
PWL+I++ +++ W ++++Y+ +Q CN
Sbjct: 189 PWLDIAMTQFKPLWTKHVDYELEFVQACN 275
>gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 490
Score = 113 bits (242), Expect = 1e-024
Identities = 37/82 (45%), Positives = 61/82 (74%)
Frame = -3 / +2
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H++G +KPWL+I++
Sbjct: 14 WKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAM 193
Query: 466 PKYRGYWNRYLNYDNPHLQQCN 401
+++ W ++++Y+ +Q CN
Sbjct: 194 TQFKPLWTKHVDYELEFVQACN 259
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 112 bits (240), Expect = 2e-024
Identities = 39/82 (47%), Positives = 58/82 (70%)
Frame = -3 / +3
Query: 646 WKAXSLPLGQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISI 467
WK +LP G + FY+ T LD WHVLGLG++ SI DE+ +A+VIHY+G +KPWL+I++
Sbjct: 60 WKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIAM 239
Query: 466 PKYRGYWNRYLNYDNPHLQQCN 401
+Y+ W +Y++ D +Q CN
Sbjct: 240 NQYKNLWTKYVDNDMEFVQTCN 305
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 70.7 bits (148), Expect(2) = 6e-023
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = -3 / -2
Query: 529 LESASVIHYSGKLKPWLEISIPKYRGYWNRYLNYDNPHLQQCNIH 395
+E +V+H++G KPWL+I + KY+ W +Y++Y +P LQQCN+H
Sbjct: 324 IEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNLH 190
Score = 56.5 bits (117), Expect(2) = 6e-023
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = -3 / -2
Query: 685 YHRWFQLGKSEKXWKAXSLPLGQVVFYNRTLPLDHRWHVLGLGH 554
YH W + WK +LP G + FY T PLD WHVLGLG+
Sbjct: 477 YHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGLGY 346
>gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_F18 3', mRNA sequence
Length = 531
Score = 103 bits (219), Expect = 1e-021
Identities = 33/74 (44%), Positives = 56/74 (75%)
Frame = -3 / -3
Query: 622 GQVVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWN 443
G + FY+ T PLD WHVLGLG++ SI DE++SA+V+H++G +KPWL+I++ +++ W
Sbjct: 526 GLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWT 347
Query: 442 RYLNYDNPHLQQCN 401
++++Y+ +Q CN
Sbjct: 346 KHVDYELEFVQACN 305
>gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_L19 3', mRNA sequence
Length = 510
Score = 101 bits (215), Expect = 5e-021
Identities = 32/72 (44%), Positives = 55/72 (76%)
Frame = -3 / -2
Query: 616 VVFYNRTLPLDHRWHVLGLGHDSSIGRDELESASVIHYSGKLKPWLEISIPKYRGYWNRY 437
+ FY+ T PLD WHVLGLG++ SI DE++SA+V+H++G +KPWL+I++ +++ W ++
Sbjct: 509 ITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKH 330
Query: 436 LNYDNPHLQQCN 401
++Y+ +Q CN
Sbjct: 329 VDYELEFVQACN 294
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 292,814,189
Number of Sequences: 369679
Number of extensions: 3459117
Number of successful extensions: 30588
Number of sequences better than 1.0e-020: 27
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8938642720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)