TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3106160.2.1
(788 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV273173.1|CV273173 WS0171.B21_O12 PTxD-NR-A-8 Populus t... 226 3e-059
gb|CV277808.1|CV277808 WS0144.B21_K01 PTxD-IL-A-5 Populus t... 226 3e-059
gb|DT484580.1|DT484580 WS02525.B21_N02 PT-MB-N-A-15 Populus... 214 1e-055
gb|CX181624.1|CX181624 F11_45-64_11.ab1 leaf inoculated wit... 209 2e-054
gb|CK102745.1|CK102745 G089P89.5pR Populus tension wood cDN... 208 7e-054
gb|CK091141.1|CK091141 F051P02.3pR Populus flower cDNA libr... 209 2e-053
gb|CX181689.1|CX181689 B02_45-51_04.ab1 leaf inoculated wit... 191 3e-053
gb|CX179313.1|CX179313 D03_45-72_07.ab1 leaf inoculated wit... 188 2e-048
gb|BI129375.1|BI129375 G089P89Y Populus cambium cDNA librar... 190 1e-047
gb|DN491968.1|DN491968 V037F03.3pR Populus male catkins cDN... 155 7e-038
gb|DT519937.1|DT519937 WS02446.B21.1_B16 PTxD-ICC-N-A-14 Po... 139 1e-033
gb|CK096215.1|CK096215 UA52DPC06.3pR Populus dormant cambiu... 109 3e-024
>gb|CV273173.1|CV273173 WS0171.B21_O12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0171_O12 3', mRNA sequence
Length = 811
Score = 226 bits (487), Expect(2) = 3e-059
Identities = 91/111 (81%), Positives = 100/111 (90%)
Frame = +3 / -2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY KFSDLTSRRDRCGCKPTKEDVKRCFML+FDRAAFIIASTA+EEEML WY E
Sbjct: 804 AAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLHWYRE 625
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNA 335
R+VWTDK LNLKLLRKG+LTRIY PM IVQ LRE+GVFTS IA+ Q +++
Sbjct: 624 RIVWTDKALNLKLLRKGILTRIYAPMVIVQRLRETGVFTSVIASAQKVLSS 472
Score = 166 bits (357), Expect = 2e-040
Identities = 77/103 (74%), Positives = 85/103 (82%)
Frame = -2 / +2
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP S L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 497 AITEVKTPVSLSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 676
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
AALS SNMKHLLTSSFVGLHP RSRL+VKSENL YV*CRTAA
Sbjct: 677 NAALSNSNMKHLLTSSFVGLHPHRSRLEVKSENLGYV*CRTAA 805
Score = 109 bits (233), Expect = 2e-023
Identities = 48/106 (45%), Positives = 64/106 (60%)
Frame = -1 / +1
Query: 320 LASCNGGSEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS* 141
L C ++T F ++L N H + A Q +F Q+ VQ + PH++F VP KHF + *
Sbjct: 487 LCRCYHRGKNTSFPKSLYNNHGSIDAGQDAFSQEFQVQCFVSPHNAFPVPVKHFLLSCC* 666
Query: 140 CNYKSCSVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
NY+ SV+ HE S +I CRLAST +TS QI KF VC+MQN S
Sbjct: 667 SNYECSSVEFQHEASFDILLCRLASTPVTS*SQIRKFRVCVMQNSS 804
Score = 25.8 bits (50), Expect(2) = 3e-059
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 357 SAIPPLSPPGLE 322
>gb|CV277808.1|CV277808 WS0144.B21_K01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_K01 3', mRNA sequence
Length = 863
Score = 226 bits (487), Expect(2) = 3e-059
Identities = 91/111 (81%), Positives = 100/111 (90%)
Frame = +3 / -2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY KFSDLTSRRDRCGCKPTKEDVKRCFML+FDRAAFIIASTA+EEEML WY E
Sbjct: 802 AAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLHWYRE 623
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNA 335
R+VWTDK LNLKLLRKG+LTRIY PM IVQ LRE+GVFTS IA+ Q +++
Sbjct: 622 RIVWTDKALNLKLLRKGILTRIYAPMVIVQRLRETGVFTSVIASAQKVLSS 470
Score = 166 bits (357), Expect = 2e-040
Identities = 77/103 (74%), Positives = 85/103 (82%)
Frame = -2 / +3
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP S L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 495 AITEVKTPVSLSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 674
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
AALS SNMKHLLTSSFVGLHP RSRL+VKSENL YV*CRTAA
Sbjct: 675 NAALSNSNMKHLLTSSFVGLHPHRSRLEVKSENLGYV*CRTAA 803
Score = 109 bits (233), Expect = 2e-023
Identities = 48/106 (45%), Positives = 64/106 (60%)
Frame = -1 / +2
Query: 320 LASCNGGSEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS* 141
L C ++T F ++L N H + A Q +F Q+ VQ + PH++F VP KHF + *
Sbjct: 485 LCRCYHRGKNTSFPKSLYNNHGSIDAGQDAFSQEFQVQCFVSPHNAFPVPVKHFLLSCC* 664
Query: 140 CNYKSCSVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
NY+ SV+ HE S +I CRLAST +TS QI KF VC+MQN S
Sbjct: 665 SNYECSSVEFQHEASFDILLCRLASTPVTS*SQIRKFRVCVMQNSS 802
Score = 25.8 bits (50), Expect(2) = 3e-059
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / -2
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 355 SAIPPLSPPGLE 320
>gb|DT484580.1|DT484580 WS02525.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_N02 3', mRNA sequence
Length = 920
Score = 214 bits (462), Expect(2) = 1e-055
Identities = 86/102 (84%), Positives = 93/102 (91%)
Frame = +3 / -2
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA+EEEML WY E
Sbjct: 859 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATEEEMLNWYRE 680
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAI 308
VVW DK L LKLLRKG+LTRIY+PM I+Q LRESGVF+S I
Sbjct: 679 HVVWGDKDLKLKLLRKGILTRIYSPMVIIQGLRESGVFSSVI 554
Score = 159 bits (342), Expect = 2e-038
Identities = 73/103 (70%), Positives = 83/103 (80%)
Frame = -2 / +3
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
++ E+KTPDS + * + +G YMRV PFLRSF F LS HTT S YQ SISSS+AVDAI+
Sbjct: 552 SITELKTPDSLKP*IMTMGEYMRVKMPFLRSFNFKSLSPHTTCSRYQFSISSSVAVDAIM 731
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
KA LSKSN+KHLLTSS VGL P RSRL+VKSENL YV*CRTAA
Sbjct: 732 KADLSKSNIKHLLTSSLVGLQPHRSRLEVKSENLEYV*CRTAA 860
Score = 24.9 bits (48), Expect(2) = 1e-055
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 486 AVPPLSPPSL 515
AVPPLSPP L
Sbjct: 373 AVPPLSPPGL 344
>gb|CX181624.1|CX181624 F11_45-64_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 690
Score = 209 bits (451), Expect(2) = 2e-054
Identities = 84/104 (80%), Positives = 93/104 (89%)
Frame = +3 / +2
Query: 24 YTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDK 203
Y KFSDLTSRRDRCGCKPTKEDVKRCFML+FDRAAFIIASTA+EEEML WY ER+VWTDK
Sbjct: 17 YPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLHWYRERIVWTDK 196
Query: 204 QLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNA 335
LNLKLLRKG+LTRIY PM IVQ LRE+GVFTS IA+ Q +++
Sbjct: 197 ALNLKLLRKGILTRIYAPMVIVQRLRETGVFTSVIASAQKVLSS 328
Score = 155 bits (332), Expect = 4e-037
Identities = 71/96 (73%), Positives = 79/96 (82%)
Frame = -2 / -1
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP SR L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 303 AITEVKTPVSRSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 124
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVY 23
AALS SNMKHLLTSSFVGLHP RSRL+VKSENL Y
Sbjct: 123 NAALSNSNMKHLLTSSFVGLHPHRSRLEVKSENLGY 16
Score = 25.8 bits (50), Expect(2) = 2e-054
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / +2
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 443 SAIPPLSPPGLE 478
>gb|CK102745.1|CK102745 G089P89.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G089P89 5', mRNA sequence
Length = 583
Score = 208 bits (448), Expect(2) = 7e-054
Identities = 84/102 (82%), Positives = 91/102 (89%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPT EDVKRCFMLDFDR+AFIIASTA+EEEML WY E
Sbjct: 10 AAVLHYTYSKFSDLTSRRDRCGCKPTTEDVKRCFMLDFDRSAFIIASTATEEEMLNWYRE 189
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAI 308
VVW DK L LKLLRKG+LTRIY+PM I+Q LRESGV +S I
Sbjct: 190 HVVWGDKDLRLKLLRKGILTRIYSPMVIIQGLRESGVCSSVI 315
Score = 154 bits (331), Expect = 6e-037
Identities = 71/103 (68%), Positives = 82/103 (79%)
Frame = -2 / -3
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
++ E++TPDS + * + +G YMRV PFLRSF LS HTT S YQ SISSS+AVDAI+
Sbjct: 317 SITELQTPDSLKP*IMTMGEYMRVKMPFLRSFNLKSLSPHTTCSRYQFSISSSVAVDAIM 138
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
KA LSKSN+KHLLTSS VGL P RSRL+VKSENL YV*CRTAA
Sbjct: 137 KADLSKSNIKHLLTSSVVGLQPHRSRLEVKSENLEYV*CRTAA 9
Score = 24.9 bits (48), Expect(2) = 7e-054
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / +1
Query: 486 AVPPLSPPSL 515
AVPPLSPP L
Sbjct: 496 AVPPLSPPGL 525
>gb|CK091141.1|CK091141 F051P02.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F051P02 3', mRNA sequence
Length = 681
Score = 209 bits (450), Expect = 2e-053
Identities = 84/102 (82%), Positives = 91/102 (89%)
Frame = +3 / +1
Query: 3 AAVLHYTYTKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNE 182
AAVLHYTY+KFSDLTSRRDRCGCKPTKEDVKRCFMLDFDR+AFIIASTA+EEEM WY E
Sbjct: 79 AAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATEEEMRNWYRE 258
Query: 183 RVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAI 308
VVW DK L LKLLRK +LTRIY+PM I+Q LRESGVF+S I
Sbjct: 259 HVVWGDKDLKLKLLRKSILTRIYSPMAIIQGLRESGVFSSVI 384
Score = 154 bits (330), Expect = 8e-037
Identities = 72/102 (70%), Positives = 80/102 (78%)
Frame = -2 / -2
Query: 307 MAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAIIK 128
+ E+KTPDS + * + IG YMRV FLRSF F LS HTT S YQ ISSS+AVDAI+
Sbjct: 383 ITELKTPDSLKP*IMAIGEYMRVKMLFLRSFNFKSLSPHTTCSRYQFRISSSVAVDAIMN 204
Query: 127 AALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLVYV*CRTAA 2
A LSKSN+KHLLTSSFVGL P RSRL+VKSENL YV*CRTAA
Sbjct: 203 ADLSKSNIKHLLTSSFVGLQPHRSRLEVKSENLEYV*CRTAA 78
Score = 105 bits (224), Expect = 3e-022
Identities = 47/102 (46%), Positives = 64/102 (62%)
Frame = -1 / -1
Query: 308 NGGSEDTGFAQTLNNCHWGVYASQHSFPQKL*VQLLIGPHDSFIVPAKHFFFTSS*CNYK 129
N +EDT + LN H +YAS ++ PQ+L Q+ + P+D F +P HF S*CNY+
Sbjct: 384 NNRAEDTRLS*ALNYGHRRIYAS*NALPQELQFQVFVTPYDMFPIPVSHFLLGCS*CNYE 205
Query: 128 SCSVKI*HETSLNIFFCRLASTAITSRCQI*KFSVCIMQNCS 3
SVKI H+ S +I CRLA+T ITSR Q+ KF + +M N S
Sbjct: 204 CRSVKIQHKASFDILLCRLAATPITSRSQVRKFGIRVM*NSS 79
>gb|CX181689.1|CX181689 B02_45-51_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 712
Score = 191 bits (411), Expect(3) = 3e-053
Identities = 76/95 (80%), Positives = 85/95 (89%)
Frame = +3 / +3
Query: 51 RRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRK 230
RRDRCGCKPTKEDVKRCFML+FDRAAFIIASTA+EEEML WY ER+VWTDK LNLKLLRK
Sbjct: 51 RRDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLHWYRERIVWTDKALNLKLLRK 230
Query: 231 GVLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNA 335
G+LTRIY PM IVQ LRE+GVFTS IA+ Q +++
Sbjct: 231 GILTRIYAPMVIVQRLRETGVFTSVIASAQKVLSS 335
Score = 136 bits (291), Expect(2) = 3e-034
Identities = 63/87 (72%), Positives = 70/87 (80%)
Frame = -2 / -1
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP S L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 310 AITEVKTPVSLSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 131
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRL 50
AALS SNMKHLLTSSFVGLHP RSRL
Sbjct: 130 NAALSNSNMKHLLTSSFVGLHPHRSRL 50
Score = 34.1 bits (68), Expect(3) = 3e-053
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3 / +1
Query: 9 VLHYTYTKFSDLTS 50
VLHYTY KFSDLTS
Sbjct: 10 VLHYTYPKFSDLTS 51
Score = 29.5 bits (58), Expect(2) = 3e-034
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = -2 / -3
Query: 49 DVKSENLVYV*CRT 8
+VKSENL YV*CRT
Sbjct: 50 EVKSENLGYV*CRT 9
Score = 25.8 bits (50), Expect(3) = 3e-053
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 450 SAIPPLSPPGLE 485
>gb|CX179313.1|CX179313 D03_45-72_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 634
Score = 188 bits (406), Expect(2) = 2e-048
Identities = 75/94 (79%), Positives = 84/94 (89%)
Frame = +3 / +3
Query: 54 RDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKG 233
RDRCGCKPTKEDVKRCFML+FDRAAFIIASTA+EEEML WY ER+VWTDK LNLKLLRKG
Sbjct: 3 RDRCGCKPTKEDVKRCFMLEFDRAAFIIASTATEEEMLHWYRERIVWTDKALNLKLLRKG 182
Query: 234 VLTRIYTPMTIVQSLRESGVFTSAIAAGQPAVNA 335
+LTRIY PM IVQ LRE+GVFTS IA+ Q +++
Sbjct: 183 ILTRIYAPMVIVQRLRETGVFTSVIASAQKVLSS 284
Score = 134 bits (287), Expect = 7e-031
Identities = 62/86 (72%), Positives = 69/86 (80%)
Frame = -2 / -1
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP S L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 259 AITEVKTPVSLSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 80
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSR 53
AALS SNMKHLLTSSFVGLHP RSR
Sbjct: 79 NAALSNSNMKHLLTSSFVGLHPHRSR 2
Score = 25.8 bits (50), Expect(2) = 2e-048
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 399 SAIPPLSPPGLE 434
>gb|BI129375.1|BI129375 G089P89Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 496
Score = 190 bits (409), Expect = 1e-047
Identities = 77/94 (81%), Positives = 83/94 (88%)
Frame = +3 / +3
Query: 27 TKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQ 206
TKFSDLTSRRDRCGCKPT EDVKRCFMLDFDR+AFIIASTA+EEEML WY E VVW DK
Sbjct: 33 TKFSDLTSRRDRCGCKPTTEDVKRCFMLDFDRSAFIIASTATEEEMLNWYREHVVWGDKD 212
Query: 207 LNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSAI 308
L LKLLRKG+LTRIY+PM I+Q LRESGV +S I
Sbjct: 213 LRLKLLRKGILTRIYSPMVIIQGLRESGVCSSVI 314
Score = 139 bits (298), Expect = 2e-032
Identities = 64/95 (67%), Positives = 75/95 (78%)
Frame = -2 / -1
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
++ E++TPDS + * + +G YMRV PFLRSF LS HTT S YQ SISSS+AVDAI+
Sbjct: 316 SITELQTPDSLKP*IMTMGEYMRVKMPFLRSFNLKSLSPHTTCSRYQFSISSSVAVDAIM 137
Query: 130 KAALSKSNMKHLLTSSFVGLHPQRSRLDVKSENLV 26
KA LSKSN+KHLLTSS VGL P RSRL+VKSENLV
Sbjct: 136 KADLSKSNIKHLLTSSVVGLQPHRSRLEVKSENLV 32
>gb|DN491968.1|DN491968 V037F03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V037F03 3', mRNA sequence
Length = 727
Score = 155 bits (332), Expect(2) = 7e-038
Identities = 62/78 (79%), Positives = 69/78 (88%)
Frame = +3 / -1
Query: 75 PTKEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYT 254
PTKEDVKRCFMLDFDR+AFIIASTA+EEEM+ WY E VVW DK L LKLLRKG+LTRIY+
Sbjct: 727 PTKEDVKRCFMLDFDRSAFIIASTATEEEMMNWYREHVVWGDKDLKLKLLRKGILTRIYS 548
Query: 255 PMTIVQSLRESGVFTSAI 308
PM I+Q LRESGVF+S I
Sbjct: 547 PMVIIQGLRESGVFSSVI 494
Score = 110 bits (234), Expect = 1e-023
Identities = 51/78 (65%), Positives = 60/78 (76%)
Frame = -2 / +3
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
++ E+KTPDS + * + +G YMRV PFLRSF F LS HTT S YQ ISSS+AVDAI+
Sbjct: 492 SITELKTPDSLKP*IMTMGEYMRVKMPFLRSFNFKSLSPHTTCSRYQFIISSSVAVDAIM 671
Query: 130 KAALSKSNMKHLLTSSFV 77
KA LSKSN+KHLLTSS V
Sbjct: 672 KADLSKSNIKHLLTSSLV 725
Score = 24.9 bits (48), Expect(2) = 7e-038
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -1
Query: 486 AVPPLSPPSL 515
AVPPLSPP L
Sbjct: 313 AVPPLSPPGL 284
>gb|DT519937.1|DT519937 WS02446.B21.1_B16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_B16 3', mRNA sequence
Length = 910
Score = 139 bits (299), Expect(2) = 1e-033
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +3 / -3
Query: 81 KEDVKRCFMLDFDRAAFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPM 260
K ++ ++FDRAAFIIASTA+EEEML WY ER+VWTDK LNLKLLRKG+LTRIY PM
Sbjct: 869 KRGCQKMLHVEFDRAAFIIASTATEEEMLHWYRERIVWTDKALNLKLLRKGILTRIYAPM 690
Query: 261 TIVQSLRESGVFTSAIAAGQPAVNA 335
IVQ LRE+GVFTS IA+ Q +++
Sbjct: 689 VIVQRLRETGVFTSVIASAQKVLSS 615
Score = 91.3 bits (193), Expect(2) = 3e-027
Identities = 44/67 (65%), Positives = 51/67 (76%)
Frame = -2 / +1
Query: 310 AMAEVKTPDSRRL*TIVIGVYMRVSTPFLRSFKFSCLSVHTTRSLYQRSISSSLAVDAII 131
A+ EVKTP S L TI +G MRV PFL+SF+FS LSVHT RS YQ SISSS+AV+AI+
Sbjct: 640 AITEVKTPVSLSLCTITMGA*MRVRMPFLKSFRFSALSVHTMRSRYQ*SISSSVAVEAIM 819
Query: 130 KAALSKS 110
AALS S
Sbjct: 820 NAALSNS 840
Score = 50.6 bits (104), Expect(2) = 3e-027
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = -2 / +3
Query: 109 NMKHLLTSSFVGLHPQRSRLDVK 41
+MKHLLTSSFVGLHP RSRL+VK
Sbjct: 840 HMKHLLTSSFVGLHPHRSRLEVK 908
Score = 25.8 bits (50), Expect(2) = 1e-033
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / -3
Query: 483 TAVPPLSPPSLD 518
+A+PPLSPP L+
Sbjct: 500 SAIPPLSPPGLE 465
>gb|CK096215.1|CK096215 UA52DPC06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA52DPC06 3', mRNA sequence
Length = 678
Score = 109 bits (232), Expect(2) = 3e-024
Identities = 45/61 (73%), Positives = 50/61 (81%)
Frame = +3 / -2
Query: 126 AFIIASTASEEEMLRWYNERVVWTDKQLNLKLLRKGVLTRIYTPMTIVQSLRESGVFTSA 305
AFIIASTA+EEEM WY E VVW DK L LKLLRK +LTRIY+PM I+Q LRESGVF+S
Sbjct: 677 AFIIASTATEEEMRNWYREHVVWGDKDLKLKLLRKSILTRIYSPMAIIQGLRESGVFSSV 498
Query: 306 I 308
I
Sbjct: 497 I 495
Score = 24.9 bits (48), Expect(2) = 3e-024
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3 / -2
Query: 486 AVPPLSPPSL 515
AVPPLSPP L
Sbjct: 314 AVPPLSPPGL 285
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 389,972,645
Number of Sequences: 369679
Number of extensions: 5362847
Number of successful extensions: 40091
Number of sequences better than 1.0e-020: 12
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10201711800
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)