TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3067516.2.1
         (605 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DT517336.1|DT517336  WS02434.B21_A14 PTxD-ICC-N-A-14 Popu...   116   6e-034

>gb|DT517336.1|DT517336 WS02434.B21_A14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02434_A14 3', mRNA sequence
          Length = 847

 Score =  116 bits (248), Expect(2) = 6e-034
 Identities = 49/78 (62%), Positives = 63/78 (80%)
 Frame = -2 / -3

                                                                       
Query: 601 NASIEERLKSIHPDVVKQMREEVINLIPKVIYADPRSKLETLKDAFDVSIEAIINKVTKL 422
           N SIEERL  I P+ VK MR+ VINLIP +IYADPRSKLETLKDAFDV+++A+I+KVT+L
Sbjct: 704 NVSIEERLSQISPEQVKIMRDNVINLIPSLIYADPRSKLETLKDAFDVAVQAVIDKVTRL 525

                             
Query: 421 RRDIIAGQEDKDFIEENS 368
           R++II G+ + D   E +
Sbjct: 524 RKNIIEGRTEYDNFVEEN 471




 Score = 90.9 bits (192), Expect(2) = 5e-026
 Identities = 35/63 (55%), Positives = 45/63 (71%)
 Frame = -2 / -3

                                                                       
Query: 397 EDKDFIEENSWKYSLLDDGQQAIGPHKWDPFFXXXXXXXXXXXXXSAEAAKNSWKSEQRG 218
           E  +F+EENSWKY+LLD+GQ+ +G H+WDPFF             SAEAAKNSW++E+RG
Sbjct: 497 EYDNFVEENSWKYALLDEGQREVGGHEWDPFFSKPKDGNADSGGSSAEAAKNSWENERRG 318

              
Query: 217 QD* 209
           Q *
Sbjct: 317 QS* 309




 Score = 77.6 bits (163), Expect(2) = 1e-024
 Identities = 36/56 (64%), Positives = 38/56 (67%)
 Frame = +3 / +1

                                                                   
Query: 219 PLCSLFQEFLAASADEPLESPPLSLGFEKNGSHL*GPIACCPSSNRLYFQLFSSIK 386
           PL S   EF AASADEP ES   S GFEK GSH * P + CPSS+  YFQLFSS K
Sbjct: 319 PLRSFSHEFFAASADEPPESALPSFGFEKKGSHS*PPTSRCPSSSNAYFQLFSSTK 486




 Score = 55.1 bits (114), Expect(2) = 1e-024
 Identities = 29/78 (37%), Positives = 40/78 (51%)
 Frame = +2 / +3

                                                                       
Query: 371 ILFDKIFVFLACDDISSQLCHFVNDRLYGNIKCIFQCLQFRSWIGIYHLWYQIXXXXXXX 550
           +L   I    A +++  Q C+FVND LYG+IK IF+ LQF + I IY  W ++       
Sbjct: 474 LLHKIIIFCTAFNNVLPQPCNFVNDCLYGDIKSIFKSLQF*ARICIYKRWNEVYNIIPHD 653

                             
Query: 551 XXXIWVNTL*PLLNAGIS 604
              +  N   P  NA IS
Sbjct: 654 LDLLRRNLTKPFFNANIS 707




 Score = 47.3 bits (97), Expect(2) = 6e-034
 Identities = 23/56 (41%), Positives = 38/56 (67%)
 Frame = -3 / -1

                                                                   
Query: 387 ILSKRIAGSIVC*TMDSRQLDLTNGIHSSRSLKIKVEILVVHLQKLPRILGKVNRE 220
           IL +R  G++ C*  DS +  + +GI SS++ ++ + ILVVHL KL +I G+++ E
Sbjct: 487 ILWRRTVGNMHC*MKDSVRWGVMSGILSSQNQRMAMLILVVHLLKLQKIHGRMSEE 320




 Score = 46.4 bits (95), Expect(2) = 5e-026
 Identities = 26/62 (41%), Positives = 33/62 (53%)
 Frame = -1 / -2

                                                                       
Query: 602 KCQH*GEAKEYSPRCGQANERGGHQSDTKGDICRSKIETGDIERCI*CFHRGDH*QSDKV 423
           KC H*  A       GQ +E   ++  +   ICRS ++ GD  RC *C   G H*QS KV
Sbjct: 705 KC*H*RTA*SNFS*AGQDHEG*CYKPHSIAYICRSSLKIGDS*RCF*CRRTGSH*QSYKV 526

             
Query: 422 EK 417
           E+
Sbjct: 525 EE 520



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 286,235,265
Number of Sequences: 369679
Number of extensions: 3570992
Number of successful extensions: 41342
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7342388850
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)