TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067450.2.1
(724 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populu... 127 1e-041
gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populu... 127 1e-041
gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Popul... 126 2e-041
gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus... 124 2e-041
gb|DN488662.1|DN488662 S021B06.3pR Populus imbibed seed cDN... 103 4e-039
gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium... 118 4e-037
gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus... 108 1e-036
gb|CA932779.1|CA932779 MTU5CS.P17.C10 Aspen stem cDNA Libra... 102 1e-032
gb|DT493173.1|DT493173 WS02553.C21_J21 PT-MB-N-A-15 Populus... 100 2e-030
gb|CV239394.1|CV239394 WS0232.B21_E06 PT-MB-A-13 Populus tr... 100 2e-030
gb|DT489174.1|DT489174 WS02538.B21_H23 PT-MB-N-A-15 Populus... 100 2e-030
gb|CV234439.1|CV234439 WS01214.B21_O21 PT-GT-FL-A-3 Populus... 100 2e-030
gb|DN490332.1|DN490332 UK116TF06.3pR Populus apical shoot c... 101 3e-030
gb|CV240212.1|CV240212 WS0234.B21_M02 PT-MB-A-13 Populus tr... 98 4e-030
gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus... 85 1e-029
gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6... 80 4e-029
gb|DT503437.1|DT503437 WS0136.BR_J20 PTxD-IL-FL-A-4 Populus... 127 1e-028
gb|DT503659.1|DT503659 WS0137.BR_G07 PTxD-IL-FL-A-4 Populus... 127 1e-028
gb|CV225757.1|CV225757 WS0162.B21_E24 PT-DX-A-7 Populus tri... 104 2e-028
gb|CX659487.1|CX659487 PO01031C05 Poplar SC cDNA library Po... 94 1e-027
gb|CX659497.1|CX659497 PO01031D04 Poplar SC cDNA library Po... 94 1e-027
gb|CX659511.1|CX659511 PO01031E10 Poplar SC cDNA library Po... 94 1e-027
gb|CA933451.1|CA933451 MTU5CS.P8.C02 Aspen stem cDNA Librar... 85 2e-027
gb|DT505641.1|DT505641 WS01811.C21_H13 PTxD-IL-N-A-9 Populu... 82 1e-026
gb|CA932285.1|CA932285 MTU5CS.P11.A06 Aspen stem cDNA Libra... 82 2e-026
emb|AJ698925.1| Populus deltoides x Populus maximowiczii pa... 74 4e-025
gb|DV465820.1|DV465820 MTUNUL1.P43.E12 NUL Populus fremonti... 113 1e-024
gb|DN484751.1|DN484751 K015P23.3pR Populus apical shoot cDN... 62 2e-024
gb|CK099728.1|CK099728 A082P19.5pR Hybrid aspen plasmid lib... 105 3e-022
gb|CN523142.1|CN523142 GQ015M01.B3_G24 GQ015 Populus tricho... 104 6e-022
gb|DT502488.1|DT502488 WS0133.BR_C08 PTxD-IL-FL-A-4 Populus... 104 8e-022
gb|CN524481.1|CN524481 GQ015M13.T3_B02 GQ015 Populus tricho... 99 1e-021
gb|M73431.1|POPOME Populus x generosa tissue-type leaf O-me... 99 4e-021
emb|A26484.1| Poplar pPLC4 99 4e-021
gb|CV227518.1|CV227518 WS0167.B21_G15 PT-DX-A-7 Populus tri... 99 4e-021
gb|CK318925.1|CK318925 X9P04h05 Populus stem seasonal libra... 99 4e-021
gb|DT510407.1|DT510407 WS02426.BR_H09 PTxD-ICC-N-A-14 Popul... 100 7e-021
>gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 3', mRNA sequence
Length = 919
Score = 127 bits (271), Expect(2) = 1e-041
Identities = 48/99 (48%), Positives = 62/99 (62%)
Frame = -2 / -2
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 696 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFV 517
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKWI+H+W D +CV ILK CK+AI
Sbjct: 516 AGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAI 400
Score = 62.9 bits (131), Expect(2) = 1e-041
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = -2 / -2
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++ G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 282 VVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 157
>gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 3', mRNA sequence
Length = 893
Score = 127 bits (271), Expect(2) = 1e-041
Identities = 48/99 (48%), Positives = 62/99 (62%)
Frame = -2 / -2
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 688 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFV 509
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKWI+H+W D +CV ILK CK+AI
Sbjct: 508 AGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAI 392
Score = 62.9 bits (131), Expect(2) = 1e-041
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = -2 / -2
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++ G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 274 VVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 149
>gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_L07 3', mRNA sequence
Length = 822
Score = 126 bits (270), Expect(2) = 2e-041
Identities = 48/99 (48%), Positives = 62/99 (62%)
Frame = -2 / -1
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 717 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPPMDCTVLDLPHVVSDLQGCKNLKFV 538
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKWI+H+W D +CV ILK CK+AI
Sbjct: 537 AGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAI 421
Score = 62.9 bits (131), Expect(2) = 2e-041
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = -2 / -1
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++ G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 303 VVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 178
>gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_E11 3', mRNA sequence
Length = 887
Score = 124 bits (265), Expect(2) = 2e-041
Identities = 46/99 (46%), Positives = 62/99 (62%)
Frame = -2 / -2
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L +V
Sbjct: 763 LVVNKCKGIFEGVSSLVDVGGGIGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKYV 584
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKW++H+W D +CV ILK CK+AI
Sbjct: 583 AGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAI 467
Score = 64.8 bits (135), Expect(2) = 2e-041
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -2 / -2
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++V G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 349 VVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP* 224
>gb|DN488662.1|DN488662 S021B06.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S021B06 3', mRNA sequence
Length = 568
Score = 103 bits (220), Expect(3) = 4e-039
Identities = 40/74 (54%), Positives = 49/74 (66%)
Frame = -2 / -3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
+ CTV DL HVVA L ++ GDMFEAIP A+A+ LKWI+HDW + ECV ILK CK
Sbjct: 503 LDCTVFDLPHVVAGLEGSENLKYLGGDMFEAIPQADAILLKWILHDWNEEECVKILKQCK 324
Query: 423 KAIPPRDAGGKVII 382
+ I R G +II
Sbjct: 323 EEIKGRGGGKVIII 282
Score = 62.9 bits (131), Expect(3) = 4e-039
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
L ++V G ER+E+EW + +AGFS Y I PVLG+RS+IE+YP*
Sbjct: 215 LMMILVTGKERNEKEWAKLFTDAGFSHYKINPVLGLRSLIEVYP* 81
Score = 33.1 bits (66), Expect(3) = 4e-039
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2 / -3
Query: 399 GGKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIV 298
GGKVII+D VV + ETQ+ D+ MI+
Sbjct: 302 GGKVIIIDMVVENNKEEEGSTETQLFFDMLMMIL 201
>gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPH11 3', mRNA sequence
Length = 882
Score = 118 bits (252), Expect(2) = 4e-037
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = -2 / -2
Query: 699 ECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDM 520
+C +F+G+ SLVDV + CTV DL HVV+ C L +V GDM
Sbjct: 710 KCKGIFEGVSSLVDVGGGLGTMAKGIAEAFPHMDCTVFDLPHVVSDLQGCKNLKYVGGDM 531
Query: 519 FEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
F+ +PPA A+ LKWI+HDW D +CV ILK C++AI
Sbjct: 530 FQGVPPAEAILLKWILHDWSDEDCVKILKRCRQAI 426
Score = 58.8 bits (122), Expect(2) = 4e-037
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2 / -2
Query: 297 NGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+G+ER+E+EW + F+AGF +Y I PVL R++IELYP*
Sbjct: 299 DGMERNEKEWAKLFFDAGFLNYKIHPVLATRALIELYP* 183
>gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_E23 3', mRNA sequence
Length = 714
Score = 108 bits (231), Expect(2) = 1e-036
Identities = 42/85 (49%), Positives = 52/85 (61%)
Frame = -2 / -1
Query: 669 SLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAV 490
SLVDV + CTVLDL HVV C L +VAGDMF+A+PPA A+
Sbjct: 711 SLVDVGGGIGTMAKGITEAFPTMDCTVLDLPHVVFDLQGCKNLKYVAGDMFQAVPPAEAI 532
Query: 489 FLKWIMHDWGDSECVTILKNCKKAI 415
LKW++H+W D +CV ILK CK+AI
Sbjct: 531 LLKWMLHNWSDEDCVKILKRCKQAI 457
Score = 64.8 bits (135), Expect(2) = 1e-036
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -2 / -1
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++V G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 339 VVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP* 214
>gb|CA932779.1|CA932779 MTU5CS.P17.C10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 624
Score = 102 bits (218), Expect(2) = 1e-032
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = -2 / -1
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
+ CTV +L HVV+ C L +VAGDMF+ +PPA A+ LKW++HDW D +CV ILK CK
Sbjct: 612 MDCTVFELPHVVSDLQGCKNLKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKILKRCK 433
Query: 423 KAI 415
+AI
Sbjct: 432 QAI 424
Score = 58.8 bits (122), Expect(2) = 1e-032
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2 / -1
Query: 297 NGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+G+ER+E+EW + F+AGF +Y I PVL R++IELYP*
Sbjct: 297 SGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>gb|DT493173.1|DT493173 WS02553.C21_J21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_J21 3', mRNA sequence
Length = 822
Score = 99.6 bits (211), Expect(2) = 2e-030
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = -2 / -1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVATAP G+S VAG+MFEAIP A+A+F++ I+HDW D CV IL+NCKKAIP +
Sbjct: 594 DLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCVEILRNCKKAIPEK 415
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2 / -1
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ E GFS Y II + + SIIE YP
Sbjct: 324 MFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 193
>gb|CV239394.1|CV239394 WS0232.B21_E06 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_E06
3', mRNA sequence
Length = 709
Score = 99.6 bits (211), Expect(2) = 2e-030
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVATAP G+S VAG+MFEAIP A+A+F++ I+HDW D CV IL+NCKKAIP +
Sbjct: 602 DLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCVEILRNCKKAIPEK 423
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ E GFS Y II + + SIIE YP
Sbjct: 332 MFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 201
>gb|DT489174.1|DT489174 WS02538.B21_H23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_H23 3', mRNA sequence
Length = 707
Score = 99.6 bits (211), Expect(2) = 2e-030
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVATAP G+S VAG+MFEAIP A+A+F++ I+HDW D CV IL+NCKKAIP +
Sbjct: 600 DLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFMQRILHDWTDESCVEILRNCKKAIPEK 421
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ E GFS Y II + + SIIE YP
Sbjct: 330 MFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 199
>gb|CV234439.1|CV234439 WS01214.B21_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_O21 3', mRNA sequence
Length = 702
Score = 99.6 bits (211), Expect(2) = 2e-030
Identities = 39/60 (65%), Positives = 48/60 (80%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVATAP G+S VAG+MFEAIP A+A+F++ I+HDW D CV IL+NCKKAIP +
Sbjct: 595 DLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFMQRILHDWTDESCVEILRNCKKAIPEK 416
Score = 53.3 bits (110), Expect(2) = 2e-030
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ E GFS Y II + + SIIE YP
Sbjct: 325 MFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 194
>gb|DN490332.1|DN490332 UK116TF06.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK116TF06 3', mRNA
sequence
Length = 805
Score = 101 bits (216), Expect(2) = 3e-030
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = -2 / -3
Query: 588 LDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPP 409
LDL HVVATAP G+S VAG+MF+AIP A+A+F+K I+HDW D CV IL+NCKKAIP
Sbjct: 635 LDLPHVVATAPKYEGVSHVAGNMFDAIPNADAIFMKRILHDWTDESCVEILRNCKKAIPE 456
Query: 408 R 406
+
Sbjct: 455 K 453
Score = 50.1 bits (103), Expect(2) = 3e-030
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ + GF+ Y II + + SIIE YP
Sbjct: 362 MFAVTTGGKERTEQEWKKLLEDGGFARYKIIKIPALESIIEAYP 231
>gb|CV240212.1|CV240212 WS0234.B21_M02 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M02
3', mRNA sequence
Length = 673
Score = 98.2 bits (208), Expect(2) = 4e-030
Identities = 38/61 (62%), Positives = 48/61 (78%)
Frame = -2 / -2
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVATAP G+S VAG+MFEAIP A+A+F++ I+HDW D C IL+NCKKAIP +
Sbjct: 564 DLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCAEILRNCKKAIPEK 385
Query: 405 D 403
+
Sbjct: 384 N 382
Score = 53.3 bits (110), Expect(2) = 4e-030
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -2 / -3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ E GFS Y II + + SIIE YP
Sbjct: 293 MFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 162
>gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_E17 3', mRNA sequence
Length = 633
Score = 84.9 bits (179), Expect(2) = 1e-029
Identities = 28/46 (60%), Positives = 37/46 (80%)
Frame = -2 / -1
Query: 552 CAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
C L +VAGDMF+A+PPA A+ LKW++H+W D +CV ILK CK+AI
Sbjct: 594 CKNLKYVAGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAI 457
Score = 64.8 bits (135), Expect(2) = 1e-029
Identities = 24/42 (57%), Positives = 34/42 (80%)
Frame = -2 / -1
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++V G+ER+E+EW + F+AGF +Y I PVLG R++IELYP*
Sbjct: 339 VVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP* 214
>gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200003B11F1, mRNA sequence
Length = 597
Score = 79.9 bits (168), Expect(3) = 4e-029
Identities = 27/43 (62%), Positives = 33/43 (76%)
Frame = -2 / +2
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
L +V GDMFEA+PPA+ + LKW +HDW D +CV ILK CK AI
Sbjct: 284 LKYVGGDMFEAVPPADVILLKWTLHDWNDEDCVKILKQCKHAI 412
Score = 47.8 bits (98), Expect(3) = 4e-029
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = -2 / +2
Query: 396 GKVIIVDTVVGAGPPNLKNKETQVMSDLFFMIVNGLERDEQEWRNIIFEAGF 241
GKVII+D V G+ + N+ + + V GLER+E EW + F+AGF
Sbjct: 437 GKVIIIDIVRGSQNGDESNETQLLWDLEMMVTVTGLERNEMEWAKLFFDAGF 592
Score = 38.2 bits (77), Expect(3) = 4e-029
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2 / +2
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVV 568
+ V +C +F+G+ SLVDV + CTV DL VV
Sbjct: 113 LVVSKCQGIFEGVNSLVDVGGGSGTMAKGIAEAFPHMDCTVFDLPRVV 256
>gb|DT503437.1|DT503437 WS0136.BR_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 5', mRNA sequence
Length = 864
Score = 127 bits (271), Expect = 1e-028
Identities = 48/99 (48%), Positives = 62/99 (62%)
Frame = -2 / +3
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 555 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFV 734
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKWI+H+W D +CV ILK CK+AI
Sbjct: 735 AGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAI 851
>gb|DT503659.1|DT503659 WS0137.BR_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 5', mRNA sequence
Length = 905
Score = 127 bits (271), Expect = 1e-028
Identities = 48/99 (48%), Positives = 62/99 (62%)
Frame = -2 / +3
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 558 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFV 737
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LKWI+H+W D +CV ILK CK+AI
Sbjct: 738 AGDMFQAVPPAEAILLKWILHNWSDEDCVKILKRCKQAI 854
>gb|CV225757.1|CV225757 WS0162.B21_E24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_E24
3', mRNA sequence
Length = 920
Score = 104 bits (222), Expect(2) = 2e-028
Identities = 37/60 (61%), Positives = 49/60 (81%)
Frame = -2 / +3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVA APA G+S V G+ FEAIP A+++F+KW++HDWGD +CV ILKNC+KA+P +
Sbjct: 516 DLPHVVAAAPAYNGVSHVGGNFFEAIPNADSIFMKWVLHDWGDEDCVKILKNCRKAMPEK 695
Score = 40.9 bits (83), Expect(2) = 2e-028
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2 / +3
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELY 187
+F G ER E EW+ ++ E GF Y II + + SIIE Y
Sbjct: 783 MFAHSTGGKERTELEWKKLLEEGGFPRYKIINIPALPSIIEAY 911
>gb|CX659487.1|CX659487 PO01031C05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031C05 5', mRNA sequence
Length = 621
Score = 94.1 bits (199), Expect(3) = 1e-027
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -2 / +3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
IQ DL HVV+ AP G+ V GD F+++P A+A FL W++HDW D EC+ ILKNCK
Sbjct: 60 IQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLHDWNDEECIQILKNCK 239
Query: 423 KAI 415
+AI
Sbjct: 240 EAI 248
Score = 44.1 bits (90), Expect(3) = 1e-027
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
G ER +EW ++ EAGFS Y I P+ V+S+I P*+
Sbjct: 366 GKERTSKEWEYVLKEAGFSSYTIKPIRAVQSVIVASP*S 482
Score = 22.6 bits (43), Expect(3) = 1e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVG 364
GKVIIV+ VVG
Sbjct: 261 GKVIIVEAVVG 293
>gb|CX659497.1|CX659497 PO01031D04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031D04 5', mRNA sequence
Length = 621
Score = 94.1 bits (199), Expect(3) = 1e-027
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -2 / +3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
IQ DL HVV+ AP G+ V GD F+++P A+A FL W++HDW D EC+ ILKNCK
Sbjct: 60 IQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLHDWNDEECIQILKNCK 239
Query: 423 KAI 415
+AI
Sbjct: 240 EAI 248
Score = 44.1 bits (90), Expect(3) = 1e-027
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
G ER +EW ++ EAGFS Y I P+ V+S+I P*+
Sbjct: 366 GKERTSKEWEYVLKEAGFSSYTIKPIRAVQSVIVASP*S 482
Score = 22.6 bits (43), Expect(3) = 1e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVG 364
GKVIIV+ VVG
Sbjct: 261 GKVIIVEAVVG 293
>gb|CX659511.1|CX659511 PO01031E10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031E10 5', mRNA sequence
Length = 621
Score = 94.1 bits (199), Expect(3) = 1e-027
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -2 / +3
Query: 603 IQCTVLDLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCK 424
IQ DL HVV+ AP G+ V GD F+++P A+A FL W++HDW D EC+ ILKNCK
Sbjct: 60 IQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLHDWNDEECIQILKNCK 239
Query: 423 KAI 415
+AI
Sbjct: 240 EAI 248
Score = 44.1 bits (90), Expect(3) = 1e-027
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -2 / +3
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP*N 178
G ER +EW ++ EAGFS Y I P+ V+S+I P*+
Sbjct: 366 GKERTSKEWEYVLKEAGFSSYTIKPIRAVQSVIVASP*S 482
Score = 22.6 bits (43), Expect(3) = 1e-027
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +3
Query: 396 GKVIIVDTVVG 364
GKVIIV+ VVG
Sbjct: 261 GKVIIVEAVVG 293
>gb|CA933451.1|CA933451 MTU5CS.P8.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 614
Score = 85.4 bits (180), Expect(2) = 2e-027
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = -2 / -3
Query: 552 CAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
C L +VAGDMF+ +PPA A+ LKW++HDW D +CV ILK CK+AI
Sbjct: 561 CKNLKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKILKRCKQAI 424
Score = 58.8 bits (122), Expect(2) = 2e-027
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2 / -3
Query: 297 NGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+G+ER+E+EW + F+AGF +Y I PVL R++IELYP*
Sbjct: 297 SGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>gb|DT505641.1|DT505641 WS01811.C21_H13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01811_H13 3', mRNA sequence
Length = 876
Score = 82.2 bits (173), Expect(3) = 1e-026
Identities = 29/58 (50%), Positives = 42/58 (72%)
Frame = -2 / -3
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HVV+ A C G+ V GDMF+++P A+AV++ ++ DW + +CV ILK CK+AIP
Sbjct: 535 DLPHVVSVAAECEGVKQVGGDMFDSVPKADAVYIMKVLQDWNNDDCVRILKKCKEAIP 362
Score = 51.0 bits (105), Expect(3) = 1e-026
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = -2 / -3
Query: 297 NGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+G ER +EW ++ EAGFS Y IIP+ V+S+IE +P*
Sbjct: 250 SGKERTSEEWDCVLKEAGFSSYNIIPIRAVQSVIEAFP* 134
Score = 24.4 bits (47), Expect(3) = 1e-026
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = -2 / -3
Query: 396 GKVIIVDTVVG 364
GKVIIV+TV+G
Sbjct: 352 GKVIIVETVIG 320
>gb|CA932285.1|CA932285 MTU5CS.P11.A06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 560
Score = 81.7 bits (172), Expect(2) = 2e-026
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = -2 / -3
Query: 543 LSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
L +VAGDMF+ +PPA A+ LKW++HDW D +CV ILK CK+AI
Sbjct: 552 LKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKILKRCKQAI 424
Score = 58.8 bits (122), Expect(2) = 2e-026
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = -2 / -3
Query: 297 NGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
+G+ER+E+EW + F+AGF +Y I PVL R++IELYP*
Sbjct: 297 SGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>emb|AJ698925.1| Populus deltoides x Populus maximowiczii partial mRNA for putative
O-methyltransferase
Length = 453
Score = 73.9 bits (155), Expect(2) = 4e-025
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = -2 / +1
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAI 415
AGDMF+A+PPA A+ LK I+HDW D +CV ILK CK+AI
Sbjct: 1 AGDMFQAVPPAEAILLKCILHDWSDEDCVKILKRCKQAI 117
Score = 60.6 bits (126), Expect(2) = 4e-025
Identities = 22/42 (52%), Positives = 34/42 (80%)
Frame = -2 / +1
Query: 306 MIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP* 181
++V+G+ER+E+EW + F++GF +Y I PV G R++IELYP*
Sbjct: 235 VVVSGVERNEKEWAKLFFDSGFLNYKIHPVPGTRAVIELYP* 360
>gb|DV465820.1|DV465820 MTUNUL1.P43.E12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 850
Score = 113 bits (242), Expect = 1e-024
Identities = 42/93 (45%), Positives = 57/93 (61%)
Frame = -2 / +1
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L +V
Sbjct: 568 LVVNKCKGIFEGVSSLVDVGGGIGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKYV 747
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGDSECVTILK 433
AGDMF+A+PPA A+ LKW++H+W D +CV ILK
Sbjct: 748 AGDMFQAVPPAEAILLKWMLHNWSDEDCVKILK 846
>gb|DN484751.1|DN484751 K015P23.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K015P23 3', mRNA sequence
Length = 612
Score = 62.0 bits (129), Expect(3) = 2e-024
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = -2 / -2
Query: 510 IPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
IP A+A+F+K I+HDW D CV IL+NCKKAIP +
Sbjct: 521 IPNADAIFMKRILHDWTDESCVEILRNCKKAIPEK 417
Score = 50.1 bits (103), Expect(3) = 2e-024
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -2 / -2
Query: 315 LFFMIVNGLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIELYP 184
+F + G ER EQEW+ ++ + GF+ Y II + + SIIE YP
Sbjct: 326 MFAVTTGGKERTEQEWKKLLEDGGFARYKIIKIPALESIIEAYP 195
Score = 38.2 bits (77), Expect(3) = 2e-024
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -2 / -1
Query: 582 LAHVVATAPACAGLSFVAGDMFEA 511
L HVVATAP G+S VAG+MF+A
Sbjct: 594 LPHVVATAPKYEGVSHVAGNMFDA 523
>gb|CK099728.1|CK099728 A082P19.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A082P19 5', mRNA sequence
Length = 374
Score = 105 bits (224), Expect = 3e-022
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = -2 / +1
Query: 699 ECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDM 520
+C +F+G+ SLVDV + CTV DL +VV+ C L +V GDM
Sbjct: 103 KCKGIFEGVSSLVDVGGGLGTMAKGIAEAFPHMDCTVFDLPNVVSDLQGCKNLKYVGGDM 282
Query: 519 FEAIPPANAVFLKWIMHDWGDSECVTILK 433
F+ +PPA A+ LKW++HDW D +CV ILK
Sbjct: 283 FQGVPPAEAILLKWVLHDWSDEDCVKILK 369
>gb|CN523142.1|CN523142 GQ015M01.B3_G24 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_G24 5', mRNA sequence
Length = 728
Score = 104 bits (222), Expect = 6e-022
Identities = 37/60 (61%), Positives = 49/60 (81%)
Frame = -2 / +1
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIPPR 406
DL HVVA APA G+S V G+ FEAIP A+++F+KW++HDWGD +CV ILKNC+KA+P +
Sbjct: 418 DLPHVVAAAPAYNGVSHVGGNFFEAIPNADSIFMKWVLHDWGDEDCVKILKNCRKAMPEK 597
>gb|DT502488.1|DT502488 WS0133.BR_C08 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0133_C08 5', mRNA sequence
Length = 812
Score = 104 bits (221), Expect = 8e-022
Identities = 39/85 (45%), Positives = 51/85 (60%)
Frame = -2 / +3
Query: 711 IAVRECGDVFQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFV 532
+ V +C +F+G+ SLVDV + CTVLDL HVV+ C L FV
Sbjct: 558 LVVNKCKGIFEGVSSLVDVGGGLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFV 737
Query: 531 AGDMFEAIPPANAVFLKWIMHDWGD 457
AGDMF+A+PPA A+ LKWI+H+W D
Sbjct: 738 AGDMFQAVPPAEAILLKWILHNWSD 812
>gb|CN524481.1|CN524481 GQ015M13.T3_B02 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M13_B02 5', mRNA sequence
Length = 812
Score = 98.7 bits (209), Expect(2) = 1e-021
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -2 / +1
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F+G+ SLVDV +I+ DL HV+ AP+ G+ V GDMF ++P
Sbjct: 280 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 459
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+AVF+KWI HDW D+ C+ LKNC A+P
Sbjct: 460 KADAVFMKWICHDWSDAHCLKFLKNCYDALP 552
Score = 24.0 bits (46), Expect(2) = 1e-021
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIEL 190
G ER E+E+ + AGF + ++ +IEL
Sbjct: 667 GKERTEKEFEGLAXXAGFQGFEVMCCAFNTHVIEL 771
>gb|M73431.1|POPOME Populus x generosa tissue-type leaf O-methyltransferase mRNA,
complete cds
Length = 1375
Score = 98.7 bits (209), Expect(2) = 4e-021
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -2 / +2
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F+G+ SLVDV +I+ DL HV+ AP+ G+ V GDMF ++P
Sbjct: 647 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 826
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+AVF+KWI HDW D+ C+ LKNC A+P
Sbjct: 827 KADAVFMKWICHDWSDAHCLKFLKNCYDALP 919
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIEL 190
G ER E+E+ + AGF + ++ +IEL
Sbjct: 1034 GKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEL 1138
>emb|A26484.1| Poplar pPLC4
Length = 1368
Score = 98.7 bits (209), Expect(2) = 4e-021
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -2 / +1
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F+G+ SLVDV +I+ DL HV+ AP+ G+ V GDMF ++P
Sbjct: 640 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 819
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+AVF+KWI HDW D+ C+ LKNC A+P
Sbjct: 820 KADAVFMKWICHDWSDAHCLKFLKNCYDALP 912
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2 / +1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIEL 190
G ER E+E+ + AGF + ++ +IEL
Sbjct: 1027 GKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEL 1131
>gb|CV227518.1|CV227518 WS0167.B21_G15 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_G15
3', mRNA sequence
Length = 899
Score = 98.7 bits (209), Expect(2) = 4e-021
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -2 / -1
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F+G+ SLVDV +I+ DL HV+ AP+ G+ V GDMF ++P
Sbjct: 752 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 573
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+AVF+KWI HDW D+ C+ LKNC A+P
Sbjct: 572 KADAVFMKWICHDWSDAHCLKFLKNCYDALP 480
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2 / -1
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIEL 190
G ER E+E+ + AGF + ++ +IEL
Sbjct: 365 GKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEL 261
>gb|CK318925.1|CK318925 X9P04h05 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 574
Score = 98.7 bits (209), Expect(2) = 4e-021
Identities = 39/91 (42%), Positives = 53/91 (58%)
Frame = -2 / +2
Query: 684 FQGIRSLVDVXXXXXXXXXXXXXXXXAIQCTVLDLAHVVATAPACAGLSFVAGDMFEAIP 505
F+G+ SLVDV +I+ DL HV+ AP+ G+ V GDMF ++P
Sbjct: 68 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 247
Query: 504 PANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
A+AVF+KWI HDW D+ C+ LKNC A+P
Sbjct: 248 KADAVFMKWICHDWSDAHCLKFLKNCYDALP 340
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2 / +2
Query: 294 GLERDEQEWRNIIFEAGFSDYIIIPVLGVRSIIEL 190
G ER E+E+ + AGF + ++ +IEL
Sbjct: 455 GKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEL 559
>gb|DT510407.1|DT510407 WS02426.BR_H09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_H09 5', mRNA sequence
Length = 884
Score = 100 bits (214), Expect = 7e-021
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -2 / +2
Query: 585 DLAHVVATAPACAGLSFVAGDMFEAIPPANAVFLKWIMHDWGDSECVTILKNCKKAIP 412
DL HV+ AP+C G+ V GDMFE++P +A+FLKWI+HDW D C+ +LKNC KAIP
Sbjct: 710 DLPHVIEHAPSCPGVEHVGGDMFESVPKGDAIFLKWILHDWSDDHCLKVLKNCYKAIP 883
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 365,145,401
Number of Sequences: 369679
Number of extensions: 5334119
Number of successful extensions: 49423
Number of sequences better than 1.0e-020: 41
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9132961040
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)