TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3067375.2.1
(1829 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA li... 249 6e-073
gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDN... 202 2e-066
gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus... 201 1e-050
gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus... 181 7e-050
gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus... 184 1e-045
gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA librar... 107 1e-044
gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus ... 177 2e-043
gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed le... 107 2e-039
gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated wit... 107 2e-039
gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated wit... 107 2e-039
gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated wit... 106 3e-039
gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium ... 105 1e-038
gb|CX182313.1|CX182313 D02_45-83_08.ab1 leaf inoculated wit... 91 1e-037
gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus ... 139 4e-032
gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus... 139 4e-032
gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Popul... 133 3e-030
gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library P... 120 1e-029
gb|BU885401.1|BU885401 R030G01 Populus root cDNA library Po... 90 5e-029
gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cD... 117 1e-028
gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambiu... 120 3e-026
gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library ... 115 1e-024
gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus... 107 3e-022
>gb|BU835835.1|BU835835 T079C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 673
Score = 249 bits (539), Expect(2) = 6e-073
Identities = 98/176 (55%), Positives = 131/176 (74%)
Frame = -3 / +1
Query: 1203 FALDHNYRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQVIFEDSEHSSTYCLAFRVV 1024
F +D Y SHIEYRWGGEGLRK LV+WASSV +++ E++++ + SS YC AF V
Sbjct: 130 FVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKKAENEERIVTAAEQLSSDYCYAFTVK 309
Query: 1023 NPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNA 844
P +PP+K+LQK++RIQ+LRCH +Y TRL+VIP+ ASRSQALRYL +RWG+EL N
Sbjct: 310 KPGLVPPVKDLQKVLRIQALRCHVIYCQNGTRLNVIPVLASRSQALRYLYVRWGVELANM 489
Query: 843 VVIVGETGDSDYEELFGGLHKTVIVKGGFNTPANRIHTVRRYPLQDVVALDSSNII 676
VV GE GD+DYE L GGLHK+V++KG ++ +N++H R YPL DV+ +S NI+
Sbjct: 490 VVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQLHANRSYPLTDVMPSESPNIV 657
Score = 46.4 bits (95), Expect(2) = 6e-073
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = -3 / +1
Query: 1305 GMLPTDFDAFICNSGSDIYY 1246
G P+DFDAFICNSGSD+YY
Sbjct: 43 GFSPSDFDAFICNSGSDLYY 102
>gb|CK103107.1|CK103107 G103P72.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G103P72 5', mRNA sequence
Length = 597
Score = 202 bits (436), Expect(3) = 2e-066
Identities = 79/137 (57%), Positives = 102/137 (74%)
Frame = -3 / +1
Query: 1203 FALDHNYRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQVIFEDSEHSSTYCLAFRVV 1024
F +D Y SHIEYRWGGEGLRK LV+WASSV +++ E++++ + S+ YC AF V
Sbjct: 85 FVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKKAENEERIVTAAEQLSTDYCYAFTVK 264
Query: 1023 NPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNA 844
P +PP+KELQK++RIQ+LRCH +Y TRL+VIP+ ASRSQALRYL +RWG+EL N
Sbjct: 265 KPGLVPPVKELQKVLRIQALRCHVIYCQNGTRLNVIPVLASRSQALRYLYVRWGVELANM 444
Query: 843 VVIVGETGDSDYEELFG 793
VV GE GD+DYE + G
Sbjct: 445 VVFAGECGDTDYERIAG 495
Score = 46.0 bits (94), Expect(3) = 2e-066
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = -3 / +2
Query: 801 LFGGLHKTVIVKGGFNTPANRIHTVRRYPLQDVV 700
L GGLHK+VI+KG + +N++H R YPL DV+
Sbjct: 488 LLGGLHKSVILKGVCTSASNQLHGNRSYPLTDVL 589
Score = 44.6 bits (91), Expect(3) = 2e-066
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = -3 / +1
Query: 1296 PTDFDAFICNSGSDIYY 1246
P+DFDAFICNSGSD+YY
Sbjct: 7 PSDFDAFICNSGSDLYY 57
>gb|DT488170.1|DT488170 WS02535.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_L05 3', mRNA sequence
Length = 901
Score = 201 bits (433), Expect = 1e-050
Identities = 80/150 (53%), Positives = 109/150 (72%)
Frame = -3 / -2
Query: 1125 WASSVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALY 946
WA SV +++ EK+++ + S+ YC AF V P +PP+KELQK +RIQ+LRCHA+Y
Sbjct: 900 WAFSVSDKKAENEKRIVTAAEQLSTDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIY 721
Query: 945 NHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVK 766
TRL+VIP+ ASRSQALRYL +RWG+EL N VV GE GD+DYE L GGLHK+V++K
Sbjct: 720 CQNGTRLNVIPVLASRSQALRYLYVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLK 541
Query: 765 GGFNTPANRIHTVRRYPLQDVVALDSSNII 676
G ++ +N++H R YPL DV+ +S NI+
Sbjct: 540 GVCSSASNQLHANRSYPLTDVMPSESPNIV 451
>gb|DT483569.1|DT483569 WS02522.B21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 3', mRNA sequence
Length = 813
Score = 181 bits (389), Expect(2) = 7e-050
Identities = 76/161 (47%), Positives = 110/161 (68%)
Frame = -3 / +1
Query: 1158 GGEGLRKYLVKWASSVVERRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLM 979
G EGLRK L W SS+++ + ++++ + S+ YC AF V P +PP+KELQK++
Sbjct: 121 GAEGLRKTLFLWPSSLIDNKADDAQRIVSSP*QLSTDYCYAFTVKKPVSVPPVKELQKVL 300
Query: 978 RIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEEL 799
IQ+LRCHA+Y T ++VIP+ ASRSQALRYL + W +EL + VV VG GD+ YE L
Sbjct: 301 TIQALRCHAIY*RNGTTINVIPVLASRSQALRYLYVPWAVELASMVVFVG*CGDTYYEGL 480
Query: 798 FGGLHKTVIVKGGFNTPANRIHTVRRYPLQDVVALDSSNII 676
GLHK+VI+KG +T +++IH+ R YPL ++ L S N++
Sbjct: 481 LVGLHKSVILKGVCSTASSQIHSNRSYPLSHIMPL*SPNVV 603
Score = 38.2 bits (77), Expect(2) = 7e-050
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3 / +1
Query: 1290 DFDAFICNSGSDIYYPLQSSDVPSNSRVTFALDH 1189
DFDAFICN G D+YY + S +TF + H
Sbjct: 1 DFDAFICNLGRDLYYSTPNPLGWSPLSLTFIITH 102
>gb|DT492401.1|DT492401 WS02550.C21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_J20 3', mRNA sequence
Length = 852
Score = 184 bits (397), Expect = 1e-045
Identities = 74/127 (58%), Positives = 96/127 (75%)
Frame = -3 / -1
Query: 1056 SSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYL 877
S+ YC AF V P +PP+KELQK +RIQ+LRCHA+Y TRL+VIP+ ASRSQALRYL
Sbjct: 831 STDYCYAFTVKKPGLVPPVKELQKALRIQALRCHAIYCQNGTRLNVIPVLASRSQALRYL 652
Query: 876 SIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVKGGFNTPANRIHTVRRYPLQDVVA 697
+RWG+EL N VV GE GD+DYE L GGLHK+V++KG ++ +N++H R YPL DV+
Sbjct: 651 YVRWGVELANMVVFAGECGDTDYEGLLGGLHKSVVLKGVCSSASNQLHANRSYPLTDVMP 472
Query: 696 LDSSNII 676
+S NI+
Sbjct: 471 SESPNIV 451
>gb|BI130274.1|BI130274 G103P25Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 425
Score = 107 bits (229), Expect(3) = 1e-044
Identities = 42/80 (52%), Positives = 58/80 (72%)
Frame = -3 / +2
Query: 1104 RRGRTEKQVIFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRL 925
R+ E++++ + S+ YC AF V P +PP+KELQK++RIQ+LRCH +Y TRL
Sbjct: 185 RKAENEERIVTAAEQLSTDYCYAFTVKKPGLVPPVKELQKVLRIQALRCHVIYCQNGTRL 364
Query: 924 SVIPMHASRSQALRYLSIRW 865
+VIP+ ASRSQALRYL +RW
Sbjct: 365 NVIPVLASRSQALRYLYVRW 424
Score = 67.5 bits (141), Expect(3) = 1e-044
Identities = 25/36 (69%), Positives = 29/36 (80%)
Frame = -3 / +1
Query: 1203 FALDHNYRSHIEYRWGGEGLRKYLVKWASSVVERRG 1096
F +D Y SHIEYRWGGEGLRK LV+WASSV ++ G
Sbjct: 85 FVVDFYYHSHIEYRWGGEGLRKTLVRWASSVSDKEG 192
Score = 44.6 bits (91), Expect(3) = 1e-044
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = -3 / +1
Query: 1296 PTDFDAFICNSGSDIYY 1246
P+DFDAFICNSGSD+YY
Sbjct: 7 PSDFDAFICNSGSDLYY 57
>gb|DT478507.1|DT478507 WS02522.BR_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P13 5', mRNA sequence
Length = 788
Score = 177 bits (381), Expect = 2e-043
Identities = 70/123 (56%), Positives = 94/123 (76%)
Frame = -3 / -3
Query: 1044 CLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRW 865
C AF V P +PP KELQK +RIQ+LRCHA+Y R++VIP+ ASRSQALRYL +RW
Sbjct: 786 CYAFTVKKPGSVPPDKELQKALRIQALRCHAIYRQNGIRINVIPVCASRSQALRYLYVRW 607
Query: 864 GIELPNAVVIVGETGDSDYEELFGGLHKTVIVKGGFNTPANRIHTVRRYPLQDVVALDSS 685
G+EL + VV VGE GD+DYE L GGLHK+VI+KG ++ +++IH+ RRYPL D++ L+
Sbjct: 606 GVELASMVVFVGECGDTDYEGLLGGLHKSVILKGVCSSASSQIHSNRRYPLSDIMPLEIP 427
Query: 684 NII 676
N++
Sbjct: 426 NVV 418
>gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed leaves cDNA library Populus tremula
x Populus tremuloides cDNA clone UL69F06 5', mRNA
sequence
Length = 789
Score = 107 bits (229), Expect(2) = 2e-039
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = -2 / +1
Query: 1825 FCKCCYFEQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKM 1646
F + E FG+TLIEAA HGLP++ATKNG PV+I++VL+NGLLVDPHDQ +IADAL K+
Sbjct: 367 FINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKL 546
Query: 1645 LSEK 1634
++EK
Sbjct: 547 VAEK 558
Score = 78.5 bits (165), Expect(2) = 2e-024
Identities = 40/67 (59%), Positives = 44/67 (65%)
Frame = +3 / -2
Query: 1626 QNCFSESIL*RASAIAC*SWGSTRRPFSRT**ISTGAPFFVAITGKPCMAASIKVTPNCS 1805
Q CFS + RASA+ C*S GSTRRP S T +STG PFFVA G P AASIKV+PN S
Sbjct: 566 QRCFSATSFRRASAMDC*S*GSTRRPLSSTRCMSTGPPFFVATIGNP*AAASIKVSPNGS 387
Query: 1806 K*QHLQK 1826
L K
Sbjct: 386 MKAGLMK 366
Score = 76.7 bits (161), Expect(2) = 2e-039
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -3 / +1
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHPAFACKED 1498
++CR+NGLKNIH FSWPEHCK YLS+I+ PRHP + +D
Sbjct: 568 AKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDD 693
Score = 55.1 bits (114), Expect(2) = 2e-024
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2 / -2
Query: 1499 SSLHAKAGCLGPRLDILDK*FLQCSGQENWCIFFNPFSRH 1618
SSL GCLG + IL++* LQCSG E W +FF PF RH
Sbjct: 692 SSLFCHCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RH 573
>gb|CX171278.1|CX171278 G09_69-19_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 698
Score = 107 bits (229), Expect(2) = 2e-039
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = -2 / +3
Query: 1825 FCKCCYFEQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKM 1646
F + E FG+TLIEAA HGLP++ATKNG PV+I++VL+NGLLVDPHDQ +IADAL K+
Sbjct: 114 FINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKL 293
Query: 1645 LSEK 1634
++EK
Sbjct: 294 VAEK 305
Score = 76.7 bits (161), Expect(2) = 2e-039
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -3 / +3
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHPAFACKED 1498
++CR+NGLKNIH FSWPEHCK YLS+I+ PRHP + +D
Sbjct: 315 AKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDD 440
Score = 75.8 bits (159), Expect(2) = 1e-023
Identities = 39/67 (58%), Positives = 43/67 (64%)
Frame = +3 / -2
Query: 1626 QNCFSESIL*RASAIAC*SWGSTRRPFSRT**ISTGAPFFVAITGKPCMAASIKVTPNCS 1805
Q CFS + RASA+ C*S GSTRRP S T +STG PF VA G P AASIKV+PN S
Sbjct: 313 QRCFSATSFRRASAMDC*S*GSTRRPLSSTRCMSTGPPFLVATIGNP*AAASIKVSPNGS 134
Query: 1806 K*QHLQK 1826
L K
Sbjct: 133 MKAGLMK 113
Score = 55.1 bits (114), Expect(2) = 1e-023
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2 / -2
Query: 1499 SSLHAKAGCLGPRLDILDK*FLQCSGQENWCIFFNPFSRH 1618
SSL GCLG + IL++* LQCSG E W +FF PF RH
Sbjct: 439 SSLFCHCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RH 320
>gb|CX174846.1|CX174846 B10_69-89_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 680
Score = 107 bits (229), Expect(2) = 2e-039
Identities = 42/64 (65%), Positives = 54/64 (84%)
Frame = -2 / +3
Query: 1825 FCKCCYFEQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKM 1646
F + E FG+TLIEAA HGLP++ATKNG PV+I++VL+NGLLVDPHDQ +IADAL K+
Sbjct: 96 FINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKL 275
Query: 1645 LSEK 1634
++EK
Sbjct: 276 VAEK 287
Score = 76.7 bits (161), Expect(2) = 2e-039
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -3 / +3
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHPAFACKED 1498
++CR+NGLKNIH FSWPEHCK YLS+I+ PRHP + +D
Sbjct: 297 AKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDD 422
Score = 75.8 bits (159), Expect(2) = 1e-023
Identities = 39/67 (58%), Positives = 43/67 (64%)
Frame = +3 / -2
Query: 1626 QNCFSESIL*RASAIAC*SWGSTRRPFSRT**ISTGAPFFVAITGKPCMAASIKVTPNCS 1805
Q CFS + RASA+ C*S GSTRRP S T +STG PF VA G P AASIKV+PN S
Sbjct: 295 QRCFSATSFRRASAMDC*S*GSTRRPLSSTRCMSTGPPFLVATIGNP*AAASIKVSPNGS 116
Query: 1806 K*QHLQK 1826
L K
Sbjct: 115 MKAGLMK 95
Score = 55.1 bits (114), Expect(2) = 1e-023
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2 / -2
Query: 1499 SSLHAKAGCLGPRLDILDK*FLQCSGQENWCIFFNPFSRH 1618
SSL GCLG + IL++* LQCSG E W +FF PF RH
Sbjct: 421 SSLFCHCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RH 302
>gb|CX182697.1|CX182697 E08_45-55_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 647
Score = 106 bits (227), Expect(2) = 3e-039
Identities = 41/59 (69%), Positives = 53/59 (89%)
Frame = -2 / +1
Query: 1810 YFEQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKMLSEK 1634
+ E FG+TLIEAA HGLP++ATKNG PV+I++VL+NGLLVDPHDQ +IADAL K+++EK
Sbjct: 16 FIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQSIADALLKLVAEK 192
Score = 76.7 bits (161), Expect(2) = 3e-039
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -3 / +1
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHPAFACKED 1498
++CR+NGLKNIH FSWPEHCK YLS+I+ PRHP + +D
Sbjct: 202 AKCRQNGLKNIHHFSWPEHCKAYLSKIAGCKPRHPQWQKSDD 327
Score = 75.3 bits (158), Expect(2) = 2e-023
Identities = 37/60 (61%), Positives = 41/60 (68%)
Frame = +3 / -1
Query: 1626 QNCFSESIL*RASAIAC*SWGSTRRPFSRT**ISTGAPFFVAITGKPCMAASIKVTPNCS 1805
Q CFS + RASA+ C*S GSTRRP S T +STG PF VA G P AASIKV+PN S
Sbjct: 200 QRCFSATSFRRASAMDC*S*GSTRRPLSSTRCMSTGPPFLVATIGNP*AAASIKVSPNGS 21
Score = 55.1 bits (114), Expect(2) = 2e-023
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2 / -1
Query: 1499 SSLHAKAGCLGPRLDILDK*FLQCSGQENWCIFFNPFSRH 1618
SSL GCLG + IL++* LQCSG E W +FF PF RH
Sbjct: 326 SSLFCHCGCLGLQPAILER*ALQCSGHEKW*MFFKPF*RH 207
>gb|AJ778592.1|AJ778592 AJ778592 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600003C06F1, mRNA sequence
Length = 717
Score = 105 bits (224), Expect(2) = 1e-038
Identities = 41/64 (64%), Positives = 53/64 (82%)
Frame = -2 / +3
Query: 1825 FCKCCYFEQFGVTLIEAAMHGLPVIATKNGAPVEIYQVLENGLLVDPHDQHAIADALYKM 1646
F + E FG+TLIEAA HGLP++ATKNG PV+I++VL+NGLLVDPHDQ +IA AL K+
Sbjct: 150 FINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSIAGALLKL 329
Query: 1645 LSEK 1634
++EK
Sbjct: 330 VAEK 341
Score = 76.2 bits (160), Expect(2) = 4e-024
Identities = 39/67 (58%), Positives = 43/67 (64%)
Frame = +3 / -3
Query: 1626 QNCFSESIL*RASAIAC*SWGSTRRPFSRT**ISTGAPFFVAITGKPCMAASIKVTPNCS 1805
Q CFS + RA A+ C*S GSTRRP S T +STG PFFVA G P AASIKV+PN S
Sbjct: 349 QRCFSATSFRRAPAMDC*S*GSTRRPLSSTRCMSTGPPFFVATMGNP*AAASIKVSPNGS 170
Query: 1806 K*QHLQK 1826
L K
Sbjct: 169 MKAGLMK 149
Score = 76.2 bits (160), Expect(2) = 1e-038
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = -3 / +3
Query: 1623 SRCRENGLKNIHQFSWPEHCKNYLSRISSLGPRHPAFACKED 1498
++CR+NGLKNIH FSWPEHCK YLSRI+S RHP + +D
Sbjct: 351 AKCRQNGLKNIHLFSWPEHCKTYLSRIASCKSRHPQWQKSDD 476
Score = 56.5 bits (117), Expect(2) = 4e-024
Identities = 25/40 (62%), Positives = 28/40 (70%)
Frame = +2 / -3
Query: 1499 SSLHAKAGCLGPRLDILDK*FLQCSGQENWCIFFNPFSRH 1618
SSL GCL +L ILD+* LQCSG EN +FFNPF RH
Sbjct: 475 SSLFCHCGCLDLQLAILDR*VLQCSGHENK*MFFNPF*RH 356
>gb|CX182313.1|CX182313 D02_45-83_08.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 648
Score = 90.9 bits (192), Expect(2) = 1e-037
Identities = 31/67 (46%), Positives = 46/67 (68%)
Frame = -3 / +1
Query: 1203 FALDHNYRSHIEYRWGGEGLRKYLVKWASSVVERRGRTEKQVIFEDSEHSSTYCLAFRVV 1024
F +D Y SHIEYRWGGEGLRK L +W+SSV++++ +++++ + S+ YC AF V
Sbjct: 448 FVIDFYYHSHIEYRWGGEGLRKTLFRWSSSVIDKKAEDAERIVYSAEQLSTDYCYAFTVK 627
Query: 1023 NPNHLPP 1003
P +PP
Sbjct: 628 KPGSVPP 648
Score = 87.7 bits (185), Expect(2) = 1e-037
Identities = 38/77 (49%), Positives = 48/77 (62%)
Frame = -3 / +1
Query: 1476 RKHISIIAVDSVKKEDLIQIIRNSVEATRTGTMSGSTGFVLSTSLTIAELQSVIVRTGML 1297
RK I ++AVD L + R EA + GS GF+LSTSL I+E+ S + G
Sbjct: 190 RKQIFVVAVDFDNFASLAEATRKIFEAVEKERVEGSIGFILSTSLAISEICSFLASGGFS 369
Query: 1296 PTDFDAFICNSGSDIYY 1246
P+DFDAFICNSGSD+YY
Sbjct: 370 PSDFDAFICNSGSDLYY 420
>gb|DT477637.1|DT477637 WS02520.BR_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 5', mRNA sequence
Length = 751
Score = 139 bits (299), Expect = 4e-032
Identities = 54/95 (56%), Positives = 75/95 (78%)
Frame = -3 / +1
Query: 960 CHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHK 781
CHA+Y TR++VIP+ ASRSQALRYL +RWG+EL + VV VGE GD+DYE L GGLHK
Sbjct: 4 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 183
Query: 780 TVIVKGGFNTPANRIHTVRRYPLQDVVALDSSNII 676
+VI+KG ++ +++IH+ R YPL D++ L+S N++
Sbjct: 184 SVILKGVCSSASSQIHSNRSYPLSDIMPLESPNVV 288
>gb|DT482695.1|DT482695 WS02520.B21_I13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I13 3', mRNA sequence
Length = 751
Score = 139 bits (299), Expect = 4e-032
Identities = 54/95 (56%), Positives = 75/95 (78%)
Frame = -3 / -1
Query: 960 CHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHK 781
CHA+Y TR++VIP+ ASRSQALRYL +RWG+EL + VV VGE GD+DYE L GGLHK
Sbjct: 748 CHAIYCQNGTRINVIPVLASRSQALRYLYVRWGVELASMVVFVGECGDTDYEGLLGGLHK 569
Query: 780 TVIVKGGFNTPANRIHTVRRYPLQDVVALDSSNII 676
+VI+KG ++ +++IH+ R YPL D++ L+S N++
Sbjct: 568 SVILKGVCSSASSQIHSNRSYPLSDIMPLESPNVV 464
>gb|CV259899.1|CV259899 WS02012.B21_J06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_J06 3', mRNA sequence
Length = 770
Score = 133 bits (286), Expect = 3e-030
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = -3 / -2
Query: 1011 LPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIV 832
+PP+KEL+KLMRIQ+LRCH +Y +++VIP+ ASRSQALRYL +RWG +L N V+
Sbjct: 751 IPPVKELRKLMRIQALRCHVIYCQQGAKINVIPVLASRSQALRYLYVRWGTDLSNIVIFT 572
Query: 831 GETGDSDYEELFGGLHKTVIVKG 763
GE GD+DYE L GGLHK+V++KG
Sbjct: 571 GECGDTDYEGLLGGLHKSVVLKG 503
>gb|BI122326.1|BI122326 I005P20P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 486
Score = 120 bits (256), Expect(2) = 1e-029
Identities = 46/104 (44%), Positives = 73/104 (70%)
Frame = -3 / +3
Query: 1077 IFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASR 898
I ED + + +C+A+ V + + + + +L++ +R++ LRCH +Y +TRL +IP ASR
Sbjct: 108 IEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASR 287
Query: 897 SQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVK 766
+QALRYL +RW + + N VI+GE GD+DYEE+ G HKT+I+K
Sbjct: 288 AQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 419
Score = 31.3 bits (62), Expect(2) = 1e-029
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3 / +3
Query: 1179 SHIEYRWGGEGLRKYLVK 1126
+HI+YRWG +GL+K + K
Sbjct: 3 AHIDYRWGCDGLKKTIWK 56
>gb|BU885401.1|BU885401 R030G01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 589
Score = 89.5 bits (189), Expect(2) = 5e-029
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = -3 / +3
Query: 1476 RKHISIIAVDSVKKEDLIQIIRNSVEATRTGTMSGSTGFVLSTSLTIAELQSVIVRTGML 1297
RK I ++AVD L + IR EA + GS GF+LSTSL I+E+ S + G
Sbjct: 234 RKQIFVVAVDFDTFASLAEAIRKIFEAVEKERVEGSIGFILSTSLVISEICSFLASGGFS 413
Query: 1296 PTDFDAFICNSGSDIYY 1246
P+DFDAFICNSGSD+YY
Sbjct: 414 PSDFDAFICNSGSDLYY 464
Score = 59.7 bits (124), Expect(2) = 5e-029
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = -3 / +3
Query: 1203 FALDHNYRSHIEYRWGGEGLRKYLVKWASSVV 1108
F +D Y HIEYRWGGEGLRK L +W+SSV+
Sbjct: 492 FVIDFYYHPHIEYRWGGEGLRKTLFRWSSSVI 587
>gb|BU819039.1|BU819039 UA38BPF06 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 511
Score = 117 bits (251), Expect(2) = 1e-028
Identities = 45/104 (43%), Positives = 73/104 (70%)
Frame = -3 / +1
Query: 1077 IFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASR 898
I ED + + +C+A+ V + + + + +L++ +R++ LRCH +Y +TRL +IP ASR
Sbjct: 190 IEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASR 369
Query: 897 SQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVK 766
+QALRYL +RW + + N VI+GE GD+D+EE+ G HKT+I+K
Sbjct: 370 AQALRYLFVRWRLNVANMFVILGENGDTDHEEMISGAHKTIILK 501
Score = 30.4 bits (60), Expect(2) = 1e-028
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3 / +1
Query: 1194 DHNYRSHIEYRWGGEGLRKYLVK 1126
D +Y +HI+YR G +GL+K + K
Sbjct: 70 DPDYAAHIDYRGGCDGLKKTIWK 138
>gb|CK095962.1|CK095962 UA38BPF06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA38BPF06 3', mRNA sequence
Length = 764
Score = 120 bits (256), Expect = 3e-026
Identities = 46/104 (44%), Positives = 73/104 (70%)
Frame = -3 / -1
Query: 1077 IFEDSEHSSTYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASR 898
I ED + + +C+A+ V + + + + +L++ +R++ LRCH +Y +TRL +IP ASR
Sbjct: 665 IEEDKKSRNAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASR 486
Query: 897 SQALRYLSIRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVK 766
+QALRYL +RW + + N VI+GE GD+DYEE+ G HKT+I+K
Sbjct: 485 AQALRYLFVRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 354
>gb|BU873883.1|BU873883 Q061A02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 616
Score = 115 bits (245), Expect = 1e-024
Identities = 43/96 (44%), Positives = 69/96 (71%)
Frame = -3 / +1
Query: 1053 STYCLAFRVVNPNHLPPLKELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLS 874
+ +C+A+ V + + + + +L++ +R++ LRCH +Y +TRL +IP ASR+QALRYL
Sbjct: 31 NAHCIAYFVKDRSKVKRVDDLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRYLF 210
Query: 873 IRWGIELPNAVVIVGETGDSDYEELFGGLHKTVIVK 766
+RW + + N VI+GE GD+DYEE+ G HKT+I+K
Sbjct: 211 VRWRLNVANMFVILGENGDTDYEEMISGAHKTIILK 318
>gb|CV283626.1|CV283626 WS0187.B21_N13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_N13 3', mRNA sequence
Length = 607
Score = 107 bits (228), Expect = 3e-022
Identities = 40/77 (51%), Positives = 58/77 (75%)
Frame = -3 / -1
Query: 996 ELQKLMRIQSLRCHALYNHGATRLSVIPMHASRSQALRYLSIRWGIELPNAVVIVGETGD 817
+L++ +R++ LRCH +Y +TRL +IP ASR+QALRYL +RW + + N VI+GE GD
Sbjct: 595 DLRQKLRMRGLRCHLMYCRNSTRLQIIPHLASRAQALRYLFVRWRLNVANMFVILGENGD 416
Query: 816 SDYEELFGGLHKTVIVK 766
+DYEE+ G HKT+I+K
Sbjct: 415 TDYEEMISGAHKTIILK 365
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 953,566,204
Number of Sequences: 369679
Number of extensions: 14521360
Number of successful extensions: 63281
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 26551323210
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)