TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 234 3e-061
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 199 1e-050
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 199 1e-050
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 186 1e-046
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 185 2e-046
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 185 2e-046
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 185 2e-046
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 185 2e-046
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 185 2e-046
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 185 2e-046
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 185 2e-046
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 185 2e-046
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 185 2e-046
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 185 2e-046
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 180 6e-045
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 178 3e-044
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 177 4e-044
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 177 7e-044
gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated wit... 171 2e-042
gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA librar... 160 7e-039
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 110 8e-039
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 152 2e-036
gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichoca... 131 2e-036
gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library ... 144 5e-034
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 137 2e-033
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 136 1e-031
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 136 1e-031
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 112 1e-029
gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus ... 119 2e-026
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 117 5e-026
gb|CV231091.1|CV231091 WS0193.B21_I08 PT-DX-N-A-10 Populus ... 116 2e-025
gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Popul... 114 4e-025
gb|BP936699.1|BP936699 BP936699 full-length enriched poplar... 111 4e-024
gb|CK089177.1|CK089177 B004P07.3pR Hybrid aspen plasmid lib... 109 2e-023
gb|CV235910.1|CV235910 WS01222.B21_B08 PT-GT-FL-A-3 Populus... 70 2e-023
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 107 5e-023
gb|CV265387.1|CV265387 WS02027.B21_B17 PTxN-IB-N-A-11 Popul... 107 7e-023
gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid lib... 102 2e-021
gb|CV252639.1|CV252639 PX0015.B21_H22 PT-X-FL-A-1 Populus t... 100 8e-021
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 234 bits (506), Expect = 3e-061
Identities = 84/115 (73%), Positives = 100/115 (86%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +W++QNIT+VYHTWQKLN +R LWKLGTLP GL+TFW RT PLDR WH LGLGY
Sbjct: 723 NIFDLKEWKRQNITDVYHTWQKLNHDRQLWKLGTLPPGLITFWKRTHPLDRRWHVLGLGY 544
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
NPNV+ ++I RAAVIHYNGN+KPWLEIG+PKYR W+ +V+YD +LRECNINP*
Sbjct: 543 NPNVSQREIERAAVIHYNGNMKPWLEIGIPKYRSNWAKYVDYDHAYLRECNINP* 379
Score = 150 bits (322), Expect = 7e-036
Identities = 72/114 (63%), Positives = 77/114 (67%)
Frame = -1 / +2
Query: 343 GFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN* 164
G +LHSR+ *S* T Q LRY G PISS GF PL* +TAAR ISL LT GL P P
Sbjct: 383 GLILHSRKYA*S*STYFAQLLRYLGMPISSHGFMLPL*CITAARSISLWLTLGL*PRPRT 562
Query: 163 CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
C RSRG VRFQKV RP GRVP+FHN L F+FC V TSVMFC S KS MF
Sbjct: 563 CQRRSRG*VRFQKVMRPGGRVPNFHNCLS*FSFCHV*YTSVMFCLFHSFKSKMF 724
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 199 bits (429), Expect = 1e-050
Identities = 68/116 (58%), Positives = 93/116 (80%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N T PL +SWH LGLGY
Sbjct: 740 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGY 561
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*T 350
NP+++ +I AAV+HYNGN+KPWLE+ + KYR YW+ ++ YD +LR CN++ *T
Sbjct: 560 NPSIDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 393
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 199 bits (429), Expect = 1e-050
Identities = 68/116 (58%), Positives = 93/116 (80%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL W+K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N T PL +SWH LGLGY
Sbjct: 741 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGY 562
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*T 350
NP+++ +I AAV+HYNGN+KPWLE+ + KYR YW+ ++ YD +LR CN++ *T
Sbjct: 561 NPSIDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 394
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 186 bits (400), Expect = 1e-046
Identities = 67/112 (59%), Positives = 85/112 (75%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
NMFDL W+ NIT +YH WQ LNE+R LWKLG+LP GL+TF+N T+PLDRSWH LGLGY
Sbjct: 373 NMFDLKQWKISNITGIYHHWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGY 552
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
+P +N +I AAV+HYNGN KP L++ + KY+ YWS V YD +L +C+I
Sbjct: 553 DPALNQTEIENAAVVHYNGNYKPXLDLAVAKYKPYWSRFVQYDNPYLHQCDI 708
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 553 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 374
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 373 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 221
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 612 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 433
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 432 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 280
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 623 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 444
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 443 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 291
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 18 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 197
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 198 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 350
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 185 bits (399), Expect = 2e-046
Identities = 64/107 (59%), Positives = 86/107 (80%)
Frame = +3 / -2
Query: 30 KQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDI 209
K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N T PL +SWH LGLGYNP+V+ +I
Sbjct: 688 KKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYNPSVDRSEI 509
Query: 210 RRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*T 350
AAV+HYNGN+KPWLE+ + KYR YW+ ++ YD +LR CN++ *T
Sbjct: 508 ENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 368
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 127 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 306
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 307 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 459
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 44 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 223
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 224 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 376
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 622 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 443
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 442 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 622 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 443
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 442 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 185 bits (399), Expect = 2e-046
Identities = 63/111 (56%), Positives = 88/111 (79%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGY
Sbjct: 622 NFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGY 443
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
NP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 442 NPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 180 bits (388), Expect = 6e-045
Identities = 66/121 (54%), Positives = 90/121 (74%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ T LD+SWH LGLGY
Sbjct: 551 NIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSLDKSWHVLGLGY 372
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +I AAVIHYNGN+KPWL+I + +Y+ W+ +V+ D F++ CN *T +
Sbjct: 371 NPSISMDEISNAAVIHYNGNMKPWLDIAMNQYKNLWTKYVDNDMEFVQMCNFGL*TNTAP 192
Query: 363 A 365
A
Sbjct: 191 A 189
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 178 bits (383), Expect = 3e-044
Identities = 60/106 (56%), Positives = 85/106 (80%)
Frame = +3 / -2
Query: 18 GDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVN 197
G WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGYNP+++
Sbjct: 623 GCWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSIS 444
Query: 198 VKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
+ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 443 MDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 306
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 177 bits (382), Expect = 4e-044
Identities = 60/109 (55%), Positives = 86/109 (78%)
Frame = +3 / +1
Query: 9 FDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNP 188
FDL WR++ TE YH WQ LNENR LWKLGTLP GL+ F++ T PL++SWH LGLGYNP
Sbjct: 1 FDLDAWRREKCTEKYHYWQNLNENRTLWKLGTLPPGLIKFYSTTKPLNKSWHVLGLGYNP 180
Query: 189 NVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 181 SISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 327
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 177 bits (380), Expect = 7e-044
Identities = 64/121 (52%), Positives = 90/121 (74%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ T LD+SWH LGLGY
Sbjct: 626 NIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSLDKSWHVLGLGY 447
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSG 362
NP++++ +I AAVIHYNG++ PWL+I + +Y+ W+ +V+ D F++ CN+ *T +
Sbjct: 446 NPSISMDEISNAAVIHYNGHMTPWLDIAMTQYKNLWTKYVDNDMEFVQMCNLGL*TNTAP 267
Query: 363 A 365
A
Sbjct: 266 A 264
>gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 488
Score = 171 bits (369), Expect = 2e-042
Identities = 58/103 (56%), Positives = 83/103 (80%)
Frame = +3 / -3
Query: 27 RKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKD 206
R++ TE YH WQ LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++ +
Sbjct: 480 RREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDE 301
Query: 207 IRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++ CN
Sbjct: 300 IQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQACN 172
>gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 160 bits (344), Expect = 7e-039
Identities = 59/119 (49%), Positives = 86/119 (72%)
Frame = +3 / +3
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
Q LNENR LWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++ +I+ AAV+H+NGN
Sbjct: 3 QNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGN 182
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP*TANSGAWFISFSFQ*FLRPILCAL 419
+KPWL+I + +++ W+ HV+Y+ F++ CN * G F++ ++PI C L
Sbjct: 183 MKPWLDIAMTQFKPLWTKHVDYELEFVQACNFGL*IPLHG*SFLAVDLPSPVKPISCVL 359
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 110 bits (235), Expect(2) = 8e-039
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +3 / -2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +WRK+N+TE+YH WQ+ N +R LWKLGTLP GL+TF+ T PLD SWH LGLGY
Sbjct: 525 NVFDLVEWRKRNVTEIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGLGY 346
Score = 69.8 bits (146), Expect(2) = 8e-039
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +3 / -2
Query: 189 NVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NV+ I + AV+H+NGN KPWL+IG+ KY+ W +V+Y L++CN++
Sbjct: 342 NVDPHLIEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNLH 190
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 152 bits (326), Expect = 2e-036
Identities = 54/113 (47%), Positives = 80/113 (70%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N+T YH WQ+ N +++LWKLGTLP L+ F+ T LDR WH LGLGY
Sbjct: 715 NVFDLIAWRKENVTARYHYWQEQNGDQMLWKLGTLPPALLAFYGLTETLDRRWHVLGLGY 536
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+ N++ + I AAVIH+NGN+KPWL++ + +Y+ W ++N + ++C I+
Sbjct: 535 DMNIDDRLIDSAAVIHFNGNMKPWLKLAIGRYKPLWERYINQSHPYYQDCVIS 377
>gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_D18 5', mRNA sequence
Length = 689
Score = 131 bits (280), Expect(2) = 2e-036
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +3 / +1
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
+ L N +WKLGTLP L+ F P+D WH LGLGY N N++ +++AAVIHYNG
Sbjct: 244 ENLKSNLTMWKLGTLPPSLIAFKGHVHPIDPFWHMLGLGYQNNTNIESVKKAAVIHYNGQ 423
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
KPWLEIG R +W+ +VNY F+R C+I
Sbjct: 424 SKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHI 519
Score = 40.9 bits (83), Expect(2) = 2e-036
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLN 74
N+FDL WR NI E YH+W K N
Sbjct: 178 NIFDLHAWRNTNIRETYHSWMKEN 249
>gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 490
Score = 144 bits (309), Expect = 5e-034
Identities = 48/86 (55%), Positives = 71/86 (82%)
Frame = +3 / +2
Query: 78 NRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWL 257
NR LWKLGTLP GL+TF++ T PLD+SWH LGLGYNP++++ +I+ AAV+H+NGN+KPWL
Sbjct: 2 NRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWL 181
Query: 258 EIGLPKYRKYWSAHVNYDQVFLRECN 335
+I + +++ W+ HV+Y+ F++ CN
Sbjct: 182 DIAMTQFKPLWTKHVDYELEFVQACN 259
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 137 bits (293), Expect(2) = 2e-033
Identities = 49/88 (55%), Positives = 68/88 (77%)
Frame = +3 / +3
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
LWKLGTLP GL+TF++ T LD+SWH LGLGYNP++++ +I AAVIHYNGN+KPWL+I
Sbjct: 57 LWKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIA 236
Query: 267 LPKYRKYWSAHVNYDQVFLRECNINP*T 350
+ +Y+ W+ +V+ D F++ CN *T
Sbjct: 237 MNQYKNLWTKYVDNDMEFVQTCNFGL*T 320
Score = 25.4 bits (49), Expect(2) = 2e-033
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3 / +1
Query: 45 EVYHTWQKLNENRL 86
E YH WQ LNE L
Sbjct: 16 EQYHYWQSLNEEPL 57
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 136 bits (292), Expect = 1e-031
Identities = 50/89 (56%), Positives = 67/89 (75%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+ T PLDR WH LGLGY
Sbjct: 256 NIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGY 435
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGL 269
+ N++ + I AAVIH+NGN+KPWL++ +
Sbjct: 436 DMNIDDRLIDSAAVIHFNGNMKPWLKLAI 522
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 136 bits (292), Expect = 1e-031
Identities = 50/89 (56%), Positives = 67/89 (75%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+ T PLDR WH LGLGY
Sbjct: 256 NIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGY 435
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGL 269
+ N++ + I AAVIH+NGN+KPWL++ +
Sbjct: 436 DMNIDDRLIDSAAVIHFNGNMKPWLKLAI 522
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 112 bits (239), Expect(2) = 1e-029
Identities = 39/91 (42%), Positives = 55/91 (60%)
Frame = +3 / +3
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
+ L + LW+LGTLP GL+ F +D WH LGLGY N ++ D A VIH+NG
Sbjct: 354 ENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGR 533
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECN 335
KPWL+I P+ R W+ ++N+ F+R C+
Sbjct: 534 AKPWLDIAFPQLRPLWAKYINFSDKFIRGCH 626
Score = 37.3 bits (75), Expect(2) = 1e-029
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLN 74
N+FDL WRK NI+ YH W + N
Sbjct: 288 NIFDLEAWRKTNISTTYHHWVEEN 359
>gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_F18 3', mRNA sequence
Length = 531
Score = 119 bits (254), Expect = 2e-026
Identities = 38/74 (51%), Positives = 61/74 (82%)
Frame = +3 / -3
Query: 114 GLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWS 293
GL+TF++ T PLD+SWH LGLGYNP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+
Sbjct: 526 GLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWT 347
Query: 294 AHVNYDQVFLRECN 335
HV+Y+ F++ CN
Sbjct: 346 KHVDYELEFVQACN 305
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 117 bits (251), Expect = 5e-026
Identities = 43/73 (58%), Positives = 55/73 (75%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ LD+SWH LGLGY
Sbjct: 77 NIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTKKSLDKSWHVLGLGY 256
Query: 183 NPNVNVKDIRRAA 221
NP++ + +I AA
Sbjct: 257 NPSITMDEISNAA 295
>gb|CV231091.1|CV231091 WS0193.B21_I08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_I08 3', mRNA sequence
Length = 557
Score = 116 bits (247), Expect = 2e-025
Identities = 40/94 (42%), Positives = 57/94 (60%)
Frame = +3 / +2
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
+ L + LW+LGTLP GL+ F +D WH LGLGY N ++ D A VIH+NG
Sbjct: 17 ENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGR 196
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
KPWL+I P+ R W+ ++N+ F++ C+I P
Sbjct: 197 AKPWLDIAFPQLRPLWAKYINFSDKFIKGCHIRP 298
>gb|CV267435.1|CV267435 WS02031.B21_L19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_L19 3', mRNA sequence
Length = 510
Score = 114 bits (244), Expect = 4e-025
Identities = 36/72 (50%), Positives = 59/72 (81%)
Frame = +3 / -2
Query: 120 VTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAH 299
+TF++ T PLD+SWH LGLGYNP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ H
Sbjct: 509 ITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKH 330
Query: 300 VNYDQVFLRECN 335
V+Y+ F++ CN
Sbjct: 329 VDYELEFVQACN 294
>gb|BP936699.1|BP936699 BP936699 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-095_F13.r 3', mRNA sequence
Length = 641
Score = 111 bits (237), Expect = 4e-024
Identities = 41/101 (40%), Positives = 58/101 (57%)
Frame = +3 / -1
Query: 36 NITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRR 215
+IT+ + + L LW+LGTLP GL+ F +D WH LGLGY N ++ D
Sbjct: 614 SITDHHWVEENLKSGLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAET 435
Query: 216 AAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
A VIH+NG KPWL+I P+ R W+ ++N F+ C+I
Sbjct: 434 AGVIHFNGRAKPWLDIAFPQLRPLWAKYINSSDKFITGCHI 312
>gb|CK089177.1|CK089177 B004P07.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B004P07 3', mRNA sequence
Length = 697
Score = 109 bits (232), Expect = 2e-023
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +3 / -1
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
L +LGTLP+GL+ F +D WH LGLGY N ++ D A VIH+NG KPWL+I
Sbjct: 520 LVQLGTLPSGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAKPWLDIA 341
Query: 267 LPKYRKYWSAHVNYDQVFLRECNINP 344
P+ R W+ ++N+ F++ C+I P
Sbjct: 340 FPQLRPLWAKYINFSDKFIKGCHIRP 263
>gb|CV235910.1|CV235910 WS01222.B21_B08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01222_B08 3', mRNA sequence
Length = 437
Score = 69.8 bits (146), Expect(2) = 2e-023
Identities = 23/51 (45%), Positives = 36/51 (70%)
Frame = +3 / -2
Query: 189 NVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NV+ I + AV+H+NGN KPWL+IG+ KY+ W +V+Y L++CN++
Sbjct: 340 NVDPHLIEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNLH 188
Score = 58.8 bits (122), Expect(2) = 2e-023
Identities = 22/31 (70%), Positives = 24/31 (77%)
Frame = +3 / -2
Query: 90 WKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
WKLGTLP GL+TF+ T PLD SWH LG GY
Sbjct: 436 WKLGTLPPGLLTFYGLTEPLDPSWHVLGWGY 344
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 107 bits (229), Expect = 5e-023
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+ T PLDR WH LGLGY
Sbjct: 248 NIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGY 427
Query: 183 NPNVNVKDIRRAAVI 227
+ N++ + I AAVI
Sbjct: 428 DMNIDDRLIDSAAVI 472
>gb|CV265387.1|CV265387 WS02027.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02027_B17 3', mRNA sequence
Length = 899
Score = 107 bits (228), Expect = 7e-023
Identities = 37/84 (44%), Positives = 51/84 (60%)
Frame = +3 / +3
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
LW+LGTLP GL+ F +D WH LGLGY N ++ D A +IH+NG KPWL+I
Sbjct: 579 LWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGIIHFNGRAKPWLDIA 758
Query: 267 LPKYRKYWSAHVNYDQVFLRECNI 338
P+ R W+ ++N F+ C+I
Sbjct: 759 FPQLRPLWAKYINSSDKFITGCHI 830
>gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 3', mRNA sequence
Length = 684
Score = 102 bits (217), Expect = 2e-021
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = +3 / -2
Query: 150 DRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRE 329
D+SWH LGLGYNP++++ +I AAVIHYNGN+KPWL+I + +Y+ W+ +V+ D F++
Sbjct: 452 DKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIAMNQYKNLWTKYVDNDMEFVQT 273
Query: 330 CNINP*T 350
CN *T
Sbjct: 272 CNFGL*T 252
>gb|CV252639.1|CV252639 PX0015.B21_H22 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_H22 3', mRNA sequence
Length = 472
Score = 100 bits (213), Expect = 8e-021
Identities = 31/63 (49%), Positives = 51/63 (80%)
Frame = +3 / -2
Query: 147 LDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLR 326
LD+SWH GLGYNP++++ +I+ AAV+H+NGN+KPWL+I + +++ W+ HV+Y+ F++
Sbjct: 471 LDKSWHVWGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQ 292
Query: 327 ECN 335
CN
Sbjct: 291 ACN 283
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 311,649,298
Number of Sequences: 369679
Number of extensions: 4422198
Number of successful extensions: 49749
Number of sequences better than 1.0e-020: 42
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7146591814
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)