TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.1
(689 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 111 1e-053
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 105 6e-043
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 105 6e-043
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 105 6e-043
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 105 6e-043
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 105 6e-043
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 105 6e-043
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 105 6e-043
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 105 6e-043
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 100 1e-041
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 100 4e-041
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 103 7e-041
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 103 1e-039
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 84 4e-039
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 84 4e-039
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 69 7e-039
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 74 1e-038
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 102 6e-036
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 94 2e-034
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 79 2e-034
gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated wit... 69 3e-032
gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichoca... 62 7e-032
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 92 8e-031
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 92 8e-031
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 102 5e-028
gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA librar... 67 7e-027
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 92 2e-025
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 62 4e-024
gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library ... 67 4e-024
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 58 2e-021
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 111 bits (237), Expect(3) = 1e-053
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = +2 / -3
Query: 14 WAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
WAYGMN+FDL W++QNIT+VYHTWQKLN +R LWKLGTLP GL+TFW R L
Sbjct: 738 WAYGMNIFDLKEWKRQNITDVYHTWQKLNHDRQLWKLGTLPPGLITFWKRTHPL 577
Score = 81.3 bits (171), Expect(3) = 3e-026
Identities = 33/50 (66%), Positives = 37/50 (74%)
Frame = -3 / +2
Query: 165 MRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLHPDKSNMFMPYA 16
+RFQKV RP GRVP+FHN L F+FC V TSVMFC H KS MF+PYA
Sbjct: 587 VRFQKVMRPGGRVPNFHNCLS*FSFCHV*YTSVMFCLFHSFKSKMFIPYA 736
Score = 74.4 bits (156), Expect(3) = 1e-053
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGYNPNV++++I RA VIH+NGN+K
Sbjct: 588 THPLDRRWHVLGLGYNPNVSQREIERAAVIHYNGNMK 478
Score = 62.9 bits (131), Expect(3) = 1e-053
Identities = 21/32 (65%), Positives = 27/32 (84%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP* 376
WLEIG+PKYR W+ +V+YD +L+ECNINP*
Sbjct: 474 WLEIGIPKYRSNWAKYVDYDHAYLRECNINP* 379
Score = 40.0 bits (81), Expect(3) = 3e-026
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = -1 / +2
Query: 284 ARSFKFPLKWMTVARLISFSLTFGLYPSPS*CHERSRG 171
+ F PL +T AR IS LT GL P P C RSRG
Sbjct: 470 SHGFMLPL*CITAARSISLWLTLGL*PRPRTCQRRSRG 583
Score = 35.0 bits (70), Expect(3) = 3e-026
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = -3 / +2
Query: 375 HGFILHSCRNTWS*LTCADQYLRYLGNPISS 283
+G ILHS + S* T Q LRYLG PISS
Sbjct: 380 YGLILHSRKYA*S*STYFAQLLRYLGMPISS 472
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 646 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 476
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 487 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 377
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 373 WLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 646 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 476
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 487 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 377
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 373 WLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 577 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 407
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 418 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 308
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 304 WLDIAMTQFKPLWTKHVDYELEFVQACN 221
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 636 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 466
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 477 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 367
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 363 WLDIAMTQFKPLWTKHVDYELEFVQACN 280
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / +1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 103 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 273
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 262 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 372
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 376 WLDIAMTQFKPLWTKHVDYELEFVQACN 459
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 647 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 477
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 488 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 378
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 374 WLDIAMTQFKPLWTKHVDYELEFVQACN 291
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 20 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 190
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 179 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 289
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 293 WLDIAMTQFKPLWTKHVDYELEFVQACN 376
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 105 bits (224), Expect(3) = 6e-043
Identities = 37/57 (64%), Positives = 43/57 (75%)
Frame = +2 / -2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 646 ACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 476
Score = 67.0 bits (140), Expect(3) = 6e-043
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 487 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 377
Score = 40.0 bits (81), Expect(3) = 6e-043
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 373 WLDIAMTQFKPLWTKHVDYELEFVQACN 290
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 100 bits (214), Expect(3) = 1e-041
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +2 / +1
Query: 2 HACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
+ACGWA+ MNMFDL W+ NIT +YH WQ LNE+R LWKLG+LP GL+TF+N
Sbjct: 346 NACGWAFDMNMFDLKQWKISNITGIYHHWQDLNEDRTLWKLGSLPPGLITFYN 504
Score = 68.0 bits (142), Expect(3) = 1e-041
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T+PLDRSWH LGLGY+P +N+ +I A V+H+NGN K
Sbjct: 508 TYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYK 618
Score = 39.1 bits (79), Expect(3) = 1e-041
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2 / +1
Query: 284 LEIGLPKYRKYWSAHVNYDQVFLQECNI 367
L++ + KY+ YWS V YD +L +C+I
Sbjct: 625 LDLAVAKYKPYWSRFVQYDNPYLHQCDI 708
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 99.6 bits (211), Expect(3) = 4e-041
Identities = 35/54 (64%), Positives = 41/54 (75%)
Frame = +2 / +3
Query: 14 WAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
WAYGMN FDL WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 3 WAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 164
Score = 67.0 bits (140), Expect(3) = 4e-041
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 153 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 263
Score = 40.0 bits (81), Expect(3) = 4e-041
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 267 WLDIAMTQFKPLWTKHVDYELEFVQACN 350
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 103 bits (220), Expect(3) = 7e-041
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +2 / -3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WA+GMN+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ +SL
Sbjct: 575 ACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSL 405
Score = 62.0 bits (129), Expect(3) = 7e-041
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T LD+SWH LGLGYNP+++ +I A VIH+NGN+K
Sbjct: 416 TKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMK 306
Score = 40.0 bits (81), Expect(3) = 7e-041
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*TANSGVCLIYR 409
WL+I + +Y+ W+ +V+ D F+Q CN *T + L+ R
Sbjct: 302 WLDIAMNQYKNLWTKYVDNDMEFVQMCNFGL*TNTAPAPLLAR 174
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 103 bits (220), Expect(3) = 1e-039
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +2 / -3
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WA+GMN+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ +SL
Sbjct: 650 ACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTTKSL 480
Score = 57.4 bits (119), Expect(3) = 1e-039
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNL 273
T LD+SWH LGLGYNP+++ +I A VIH+NG++
Sbjct: 491 TKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGHM 384
Score = 40.0 bits (81), Expect(3) = 1e-039
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*T 379
WL+I + +Y+ W+ +V+ D F+Q CN+ *T
Sbjct: 377 WLDIAMTQYKNLWTKYVDNDMEFVQMCNLGL*T 279
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 84.0 bits (177), Expect(3) = 4e-039
Identities = 28/44 (63%), Positives = 38/44 (86%)
Frame = +2 / -3
Query: 29 NMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
N+FDL W+K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N
Sbjct: 740 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYN 609
Score = 65.2 bits (136), Expect(3) = 4e-039
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL +SWH LGLGYNP+++ +I A V+H+NGN+K
Sbjct: 605 THPLQKSWHVLGLGYNPSIDRSEIENAAVVHYNGNMK 495
Score = 50.6 bits (104), Expect(3) = 4e-039
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*T 379
WLE+ + KYR YW+ ++ YD +L+ CN++ *T
Sbjct: 491 WLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 393
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 84.0 bits (177), Expect(3) = 4e-039
Identities = 28/44 (63%), Positives = 38/44 (86%)
Frame = +2 / -3
Query: 29 NMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
N+FDL W+K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N
Sbjct: 741 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYN 610
Score = 65.2 bits (136), Expect(3) = 4e-039
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL +SWH LGLGYNP+++ +I A V+H+NGN+K
Sbjct: 606 THPLQKSWHVLGLGYNPSIDRSEIENAAVVHYNGNMK 496
Score = 50.6 bits (104), Expect(3) = 4e-039
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*T 379
WLE+ + KYR YW+ ++ YD +L+ CN++ *T
Sbjct: 492 WLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 394
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 68.9 bits (144), Expect(4) = 7e-039
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2 / -2
Query: 56 KQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWN 160
K++IT +YH WQ +NE+R+LWKLGTLP GL+TF+N
Sbjct: 688 KKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYN 584
Score = 65.7 bits (137), Expect(4) = 7e-039
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL +SWH LGLGYNP+V+ +I A V+H+NGN+K
Sbjct: 580 THPLQKSWHVLGLGYNPSVDRSEIENAAVVHYNGNMK 470
Score = 50.6 bits (104), Expect(4) = 7e-039
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*T 379
WLE+ + KYR YW+ ++ YD +L+ CN++ *T
Sbjct: 466 WLELAMTKYRPYWTKYIKYDHPYLRNCNLSE*T 368
Score = 31.3 bits (62), Expect(4) = 7e-039
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +2 / -1
Query: 11 GWAYGMNMFDL 43
GWAYGMN+FDL
Sbjct: 731 GWAYGMNIFDL 699
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 74.4 bits (156), Expect(4) = 1e-038
Identities = 26/42 (61%), Positives = 32/42 (76%)
Frame = +2 / -2
Query: 50 WRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
WR++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 617 WRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 492
Score = 67.0 bits (140), Expect(4) = 1e-038
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 503 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 393
Score = 40.0 bits (81), Expect(4) = 1e-038
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 389 WLDIAMTQFKPLWTKHVDYELEFVQACN 306
Score = 34.1 bits (68), Expect(4) = 1e-038
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2 / -3
Query: 5 ACGWAYGMNMFDL 43
AC WAYGMN FDL
Sbjct: 661 ACAWAYGMNFFDL 623
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 102 bits (217), Expect(4) = 6e-036
Identities = 35/51 (68%), Positives = 44/51 (86%)
Frame = +2 / -2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL WRK+N+TE+YH WQ+ N +R LWKLGTLP GL+TF+
Sbjct: 549 ACGWAFGMNVFDLVEWRKRNVTEIYHYWQEKNVDRTLWKLGTLPPGLLTFY 397
Score = 44.6 bits (91), Expect(4) = 6e-036
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2 / -2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL+IG+ KY+ W +V+Y LQ+CN++
Sbjct: 279 WLKIGMEKYKSLWEKYVDYSHPLLQQCNLH 190
Score = 32.7 bits (65), Expect(4) = 6e-036
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1 / -2
Query: 166 TFPLDRSWHQLGLGY 210
T PLD SWH LGLGY
Sbjct: 390 TEPLDPSWHVLGLGY 346
Score = 26.7 bits (52), Expect(4) = 6e-036
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1 / -2
Query: 217 NVNEKDIRRATVIHFNGNLK 276
NV+ I + V+HFNGN K
Sbjct: 342 NVDPHLIEKGAVLHFNGNSK 283
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 93.6 bits (198), Expect(3) = 2e-034
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +2 / -1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
ACGWA+GMN+FDL WRK+N+T YH WQ+ N +++LWKLGTLP L+ F+ +L
Sbjct: 739 ACGWAFGMNVFDLIAWRKENVTARYHYWQEQNGDQMLWKLGTLPPALLAFYGLTETL 569
Score = 57.9 bits (120), Expect(3) = 2e-034
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +1 / -1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T LDR WH LGLGY+ N++++ I A VIHFNGN+K
Sbjct: 580 TETLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMK 470
Score = 32.7 bits (65), Expect(3) = 2e-034
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2 / -1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNIN 370
WL++ + +Y+ W ++N + Q+C I+
Sbjct: 466 WLKLAIGRYKPLWERYINQSHPYYQDCVIS 377
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 79.0 bits (166), Expect(3) = 2e-034
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2 / +1
Query: 35 FDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
FDL WR++ TE YH WQ LNENR LWKLGTLP GL+ F++ + L
Sbjct: 1 FDLDAWRREKCTEKYHYWQNLNENRTLWKLGTLPPGLIKFYSTTKPL 141
Score = 64.8 bits (135), Expect(3) = 2e-034
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PL++SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 130 TKPLNKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 240
Score = 40.0 bits (81), Expect(3) = 2e-034
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 244 WLDIAMTQFKPLWTKHVDYELEFVQACN 327
>gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 488
Score = 69.3 bits (145), Expect(3) = 3e-032
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +2 / -3
Query: 53 RKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
R++ TE YH WQ LNENR LWKLGTLP GL+TF++ + L
Sbjct: 480 RREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPL 358
Score = 67.0 bits (140), Expect(3) = 3e-032
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / -3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 369 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 259
Score = 40.0 bits (81), Expect(3) = 3e-032
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / -3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 255 WLDIAMTQFKPLWTKHVDYELEFVQACN 172
>gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_D18 5', mRNA sequence
Length = 689
Score = 61.6 bits (128), Expect(4) = 7e-032
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = +2 / +1
Query: 8 CGWAYGMNMFDLSGWRKQNITEVYHTWQKLN 100
C WAYGMN+FDL WR NI E YH+W K N
Sbjct: 157 CAWAYGMNIFDLHAWRNTNIRETYHSWMKEN 249
Score = 56.5 bits (117), Expect(4) = 7e-032
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1 / +1
Query: 163 HTFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
H P+D WH LGLGY N N + +++A VIH+NG K
Sbjct: 316 HVHPIDPFWHMLGLGYQNNTNIESVKKAAVIHYNGQSK 429
Score = 41.4 bits (84), Expect(4) = 7e-032
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2 / +1
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNI 367
WLEIG R +W+ +VNY F++ C+I
Sbjct: 433 WLEIGFEHLRPFWTKYVNYSNDFIRNCHI 519
Score = 33.1 bits (66), Expect(4) = 7e-032
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2 / +1
Query: 89 QKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
+ L N +WKLGTLP L+ F + +
Sbjct: 244 ENLKSNLTMWKLGTLPPSLIAFKGHVHPI 330
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 92.3 bits (195), Expect(2) = 8e-031
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2 / +1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+
Sbjct: 232 ACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFY 384
Score = 61.6 bits (128), Expect(2) = 8e-031
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGY+ N++++ I A VIHFNGN+K
Sbjct: 391 TEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMK 501
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 92.3 bits (195), Expect(2) = 8e-031
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2 / +1
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+
Sbjct: 232 ACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFY 384
Score = 61.6 bits (128), Expect(2) = 8e-031
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1 / +1
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLDR WH LGLGY+ N++++ I A VIHFNGN+K
Sbjct: 391 TEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHFNGNMK 501
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 102 bits (218), Expect(2) = 5e-028
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
AC WA+GMN+FDL WR++ TE YH WQ LNE+R LWKLGTLP GL+TF++ +SL
Sbjct: 53 ACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGLITFYSTKKSL 223
Score = 40.9 bits (83), Expect(2) = 5e-028
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1 / +2
Query: 175 LDRSWHQLGLGYNPNVNEKDIRRA 246
LD+SWH LGLGYNP++ +I A
Sbjct: 221 LDKSWHVLGLGYNPSITMDEISNA 292
>gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 67.0 bits (140), Expect(3) = 7e-027
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 78 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 188
Score = 51.0 bits (105), Expect(3) = 7e-027
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2 / +3
Query: 89 QKLNENRLLWKLGTLPAGLVTFWNRIRSL 175
Q LNENR LWKLGTLP GL+TF++ + L
Sbjct: 3 QNLNENRTLWKLGTLPPGLITFYSTTKPL 89
Score = 40.0 bits (81), Expect(3) = 7e-027
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 192 WLDIAMTQFKPLWTKHVDYELEFVQACN 275
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 92.3 bits (195), Expect(2) = 2e-025
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +2 / +2
Query: 5 ACGWAYGMNMFDLSGWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFW 157
ACGWA+GMN+FDL WRK+N+T YH WQ+ N ++ LWKLGTLP L+ F+
Sbjct: 224 ACGWAFGMNIFDLIAWRKENVTAQYHYWQEQNADQTLWKLGTLPPALLAFY 376
Score = 43.7 bits (89), Expect(2) = 2e-025
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVI 255
T PLDR WH LGLGY+ N++++ I A VI
Sbjct: 383 TEPLDRRWHVLGLGYDMNIDDRLIDSAAVI 472
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 62.0 bits (129), Expect(4) = 4e-024
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1 / +3
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T LD+SWH LGLGYNP+++ +I A VIH+NGN+K
Sbjct: 108 TKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMK 218
Score = 39.6 bits (80), Expect(4) = 4e-024
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2 / +3
Query: 113 LWKLGTLPAGLVTFWNRIRSL 175
LWKLGTLP GL+TF++ +SL
Sbjct: 57 LWKLGTLPPGLITFYSTTKSL 119
Score = 39.1 bits (79), Expect(4) = 4e-024
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2 / +3
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECNINP*T 379
WL+I + +Y+ W+ +V+ D F+Q CN *T
Sbjct: 222 WLDIAMNQYKNLWTKYVDNDMEFVQTCNFGL*T 320
Score = 25.4 bits (49), Expect(4) = 4e-024
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2 / +1
Query: 71 EVYHTWQKLNENRL 112
E YH WQ LNE L
Sbjct: 16 EQYHYWQSLNEEPL 57
>gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 490
Score = 67.0 bits (140), Expect(3) = 4e-024
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1 / +2
Query: 166 TFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
T PLD+SWH LGLGYNP+++ +I+ A V+HFNGN+K
Sbjct: 62 TKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMK 172
Score = 41.8 bits (85), Expect(3) = 4e-024
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2 / +2
Query: 104 NRLLWKLGTLPAGLVTFWNRIRSL 175
NR LWKLGTLP GL+TF++ + L
Sbjct: 2 NRTLWKLGTLPPGLITFYSTTKPL 73
Score = 40.0 bits (81), Expect(3) = 4e-024
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2 / +2
Query: 281 WLEIGLPKYRKYWSAHVNYDQVFLQECN 364
WL+I + +++ W+ HV+Y+ F+Q CN
Sbjct: 176 WLDIAMTQFKPLWTKHVDYELEFVQACN 259
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 58.3 bits (121), Expect(3) = 2e-021
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +2 / +3
Query: 8 CGWAYGMNMFDLSGWRKQNITEVYHTWQKLN 100
C WAYGMN+FDL WRK NI+ YH W + N
Sbjct: 267 CAWAYGMNIFDLEAWRKTNISTTYHHWVEEN 359
Score = 49.2 bits (101), Expect(3) = 2e-021
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = +1 / +3
Query: 163 HTFPLDRSWHQLGLGYNPNVNEKDIRRATVIHFNGNLK 276
H +D WH LGLGY N + D A VIHFNG K
Sbjct: 426 HVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAK 539
Score = 32.2 bits (64), Expect(3) = 2e-021
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2 / +3
Query: 89 QKLNENRLLWKLGTLPAGLVTFWNRI 166
+ L + LW+LGTLP GL+ F +
Sbjct: 354 ENLKSDLSLWQLGTLPPGLIAFHGHV 431
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 339,529,562
Number of Sequences: 369679
Number of extensions: 4669684
Number of successful extensions: 42226
Number of sequences better than 1.0e-020: 33
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8598585660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)