TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969966.2.1
(1029 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated wit... 379 e-104
gb|DT475076.1|DT475076 WS0125.BR_O23 PT-GT-FL-A-3 Populus t... 278 2e-083
gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Librar... 248 3e-065
gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus ... 210 2e-053
gb|DT482117.1|DT482117 WS02533.BR_P08 PT-MB-N-A-15 Populus ... 161 4e-052
gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus... 100 7e-040
gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZA... 154 1e-036
gb|BI129107.1|BI129107 G086P05Y Populus cambium cDNA librar... 135 3e-035
gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus... 97 5e-035
gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA... 89 2e-034
gb|BI138876.1|BI138876 F118P18Y Populus flower cDNA library... 141 6e-033
gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library ... 84 2e-031
gb|CX177283.1|CX177283 B04_69-106_04.ab1 leaf inoculated wi... 136 3e-031
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 122 3e-031
gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichoca... 102 6e-028
gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA libr... 120 2e-026
gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library ... 57 6e-026
gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA libr... 96 1e-025
gb|CK102650.1|CK102650 G086P05.5pR Populus tension wood cDN... 114 8e-025
gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus... 84 7e-023
gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Popul... 101 6e-021
>gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 756
Score = 379 bits (821), Expect = e-104
Identities = 152/187 (81%), Positives = 167/187 (89%)
Frame = +3 / +2
Query: 36 FVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXX 215
FVSAKRL+AGDSVLFIWNEKNQLLLGI+ ATRPQTVMPSSVLSSDSMH+GLL
Sbjct: 11 FVSAKRLIAGDSVLFIWNEKNQLLLGIKRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAA 190
Query: 216 TNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITE 395
TNSRFTIFYNPRASP+EF+IPL+KY+KAV++TR+SVGMRFRMLFETEESSVRRYMGTIT
Sbjct: 191 TNSRFTIFYNPRASPSEFIIPLAKYLKAVYYTRVSVGMRFRMLFETEESSVRRYMGTITG 370
Query: 396 VSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWY 575
+SD D RWP+S WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPS FPLR+K PW
Sbjct: 371 ISDLDVARWPNSLWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWT 550
Query: 576 SGLAALH 596
GL++ H
Sbjct: 551 PGLSSFH 571
Score = 266 bits (575), Expect = 2e-070
Identities = 128/183 (69%), Positives = 137/183 (74%)
Frame = -3 / -1
Query: 583 SPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*ELGQRTGSA 404
SP G L+ GN DGYIGKVVSGSISHRETLG LSPAVDSSQPT T+ Q E G S
Sbjct: 558 SPGVHGRLSLRGNGDGYIGKVVSGSISHRETLGCLSPAVDSSQPTLTERQSEFGHLATSK 379
Query: 403 SLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKR 224
SL VIVPMY RTLDSSVSN+IL R+PTD RV* TAL Y G+ NS GLALGL* IVKR
Sbjct: 378 SLMPVIVPMYRRTLDSSVSNSILKRMPTDTRV**TALRYLANGMMNSDGLALGL*NIVKR 199
Query: 223 LFVXXXXXXXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLA 44
LFV AR P CMLSL++T+EGITV GRVA L+PS S FFSF M STESPA SLLA
Sbjct: 198 LFVAAA*AAAARRPKCMLSLDKTDEGITV*GRVARLMPSSS*FFSFQMKSTESPAISLLA 19
Query: 43 LTN 35
LTN
Sbjct: 18 LTN 10
Score = 150 bits (322), Expect = 1e-035
Identities = 76/183 (41%), Positives = 106/183 (57%)
Frame = +2 / +1
Query: 35 VCQC*ETCCWRFCAIHME*EKPAFAWNQTRYPATDCDALFCSFE*QHAHRTPCSSSSCCC 214
VC+C*+T CW F A H+E*++ A W+ Y ++CDA HA C SSC C
Sbjct: 10 VCEC*KTYCWGFSAFHLE*KESATTWH*ACYSTSNCDAFISLI*R*HALGPSCCCSSCSC 189
Query: 215 NKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQVHGDNNR 394
NK P +N L S G S RI +T I C ++ + W A+ D +*+* IKCP VHG +N
Sbjct: 190 NK*PFYNILQSKG*SIRIHHTVG*IS*SCLLYSSVCWHAL*DAV*N*RIKCPSVHGYDNW 369
Query: 395 SE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPVPTAS*ASLV 574
+* +A F L +S+GWLG*+ +AT SFS+G+* T+N VSI + + A++
Sbjct: 370 HK*LRCC*MAKFTLALSQGWLG*VYSWGEATKSFSMGD*TTNNFPNVSISISPKAQAAMD 549
Query: 575 FRT 583
RT
Sbjct: 550 TRT 558
Score = 143 bits (306), Expect = 2e-033
Identities = 68/168 (40%), Positives = 93/168 (55%)
Frame = -2 / -3
Query: 539 WIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITHFCYCPHVPADT* 360
WIH + C W N P RNS P IP NL *+P P+ + +T+ Y HVP DT*
Sbjct: 514 WIHWESC*WFNLP*RNSWLPLPSCRLIPANLD*APK*IWPSSNI*VTYASYRTHVPTDT* 335
Query: 359 FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAVXXXXXXXXCKESD 180
F S K HP++H N + + NS +F + Y++F WT P I++ C+ A+ K++
Sbjct: 334 FFSFKQHPKAHANRHSSIINSFKIFSQRYDEF*WTSPWIVKYCKTAICCSCMSCSSKKAQ 155
Query: 179 VHAVTRKNRRGHHSLWPGSVSDSKQKLVFLIPYE*HRISSNKSLSTDK 36
VHA+ R + HHSL S ++K L+ IP E H I SNKS ST K
Sbjct: 154 VHAIAR*D**RHHSLRSSSTLNAK**LILFIPDEKH*IPSNKSFSTHK 11
Score = 86.8 bits (183), Expect(2) = 7e-023
Identities = 46/106 (43%), Positives = 58/106 (54%)
Frame = +1 / +3
Query: 223 AASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK*V 402
A Q+ I G V QN Y + N +LF L C GC L+L+NQVS GTW +* *V
Sbjct: 198 AVLQYFTIQGLVHQNSSYRWLNILKLFIILECLLACALGCCLKLKNQVSVGTWVR*LA*V 377
Query: 403 MLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
G + G Q RL GM+ +G+ EFL G+L+H*Q CIH
Sbjct: 378 T*MLLDGQIHFGAQSRLAGMSLQLGRGNQEFLYGRLNH*QLSQCIH 515
Score = 40.9 bits (83), Expect(2) = 7e-023
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1 / +3
Query: 43 VLRDLLLEILCYSYGMRKTSFCLESDTLPGHRL*CPLLFFRVTACT 180
VL+DLLL I C+S GM++ S+ L L +L*C + ACT
Sbjct: 18 VLKDLLLGIQCFSSGMKRISYYLALSVLLDLKL*CLHQSYLAIACT 155
>gb|DT475076.1|DT475076 WS0125.BR_O23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_O23 5', mRNA sequence
Length = 578
Score = 278 bits (602), Expect(3) = 2e-083
Identities = 111/128 (86%), Positives = 119/128 (92%)
Frame = +3 / +3
Query: 216 TNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITE 395
TNS FT+FYNPRASP+EFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTIT
Sbjct: 12 TNSCFTVFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYMGTITG 191
Query: 396 VSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWY 575
+SD DPVRWP+S+WRSVKVGWDESTAGER PRVSLWEIEPLTTFPMYPSLFPLR+K PW+
Sbjct: 192 ISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWH 371
Query: 576 SGLAALHD 599
G +L D
Sbjct: 372 PGSPSLLD 395
Score = 197 bits (425), Expect(2) = 3e-054
Identities = 92/130 (70%), Positives = 101/130 (77%)
Frame = -3 / -2
Query: 604 LSS*RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*EL 425
L S + P QG +R GN DGY+GKVV GSISH +TLG LSPAVDSSQPT TD Q EL
Sbjct: 400 LLSSKDGDPGCQGRFSRRGNSDGYMGKVVKGSISHNDTLGCLSPAVDSSQPTLTDRQCEL 221
Query: 424 GQRTGSASLTSVIVPMYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALG 245
GQRTGS SL VIVPMYLRTLDSSVS +I RIPT++RV* TALMY +RGITNS GLALG
Sbjct: 220 GQRTGSRSLMPVIVPMYLRTLDSSVSKSIRKRIPTEMRV*NTALMYLDRGITNSDGLALG 41
Query: 244 L*KIVKRLFV 215
L* VK+L V
Sbjct: 40 L*NTVKQLLV 11
Score = 117 bits (250), Expect = 1e-025
Identities = 54/119 (45%), Positives = 70/119 (58%)
Frame = -2 / -1
Query: 575 IPRMLNSQWEQGWIHRKGCQWLNFPQRNSRWPFSCG*FIPTNLH*SPIGTRPTHWVSITH 396
+PR S+ + WIH + C LN P + P +C * IP NL SP+ RP + + IT+
Sbjct: 371 MPRPFQSEGK**WIHGESC*RLNLP**HPWLPLTCC*LIPANLDRSPVRIRPANRIQITY 192
Query: 395 FCYCPHVPADT*FLSLK*HPESHPN*YPRVKNSLDVFRKGYNKFCWTCPRIIENCEAAV 219
Y HVP DT*F SLK HPE+H N* VK +VF YNK WT P +IE+C+ A+
Sbjct: 191 ASYRTHVPTDT*FFSLKKHPEAHSN*NACVKYCFNVFG*RYNKLRWTSPWVIEHCKTAI 15
Score = 105 bits (224), Expect = 5e-022
Identities = 52/114 (45%), Positives = 69/114 (60%)
Frame = +2 / +2
Query: 206 CCCNKQPLHNFL*S*GKSNRICYTPFEIHQGCFSHADISWDAIQDVI*D*GIKCPQVHGD 385
CCCN ++ L* G S +CYT +IH SH SW+A+ D *D* IKCP VHG
Sbjct: 2 CCCN**LFYSVL*PKG*SI*VCYTSIQIH*SSISHTHFSWNALPDAF*D*RIKCP*VHGY 181
Query: 386 NNRSE*C*PSALA*FLLEISEGWLG*INRRRKAT*SFSVGN*ATDNLSYVSIPV 547
+N +* +LA*F L I +GWLG*+N R +A +G+*A +N +VSI +
Sbjct: 182 DNWHK*SGSCSLA*FALAICQGWLG*VNSR*EAAKGVIMGD*AFNNFPHVSITI 343
Score = 101 bits (215), Expect = 8e-021
Identities = 51/106 (48%), Positives = 64/106 (60%)
Frame = +1 / +1
Query: 223 AASQFSIILGQVQQNLLYPFRNTSRLFFTRGYQLGCDSGCYLRLRNQVSAGTWGQ*QK*V 402
A Q SI G V +LLY + NT + +FT +QL C SGC+LRL+NQVS GTW +* *V
Sbjct: 19 AVLQCSITQGLVHLSLLYLYPNTLKQYFTHAFQLECASGCFLRLKNQVSVGTWVR*LA*V 198
Query: 403 MLTQCVGLVPIGDQ*RLVGMNQPQEKGHLEFLCGKLSH*QPFLCIH 540
+ GL+ GD RL GM+Q Q +G G+LS *Q CIH
Sbjct: 199 IWILFAGLIRTGDLSRLAGMSQQQVRGSQGCHYGRLSL*QLSPCIH 336
Score = 37.7 bits (76), Expect(3) = 2e-083
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 603 SNALMWLRGVTGEGGFHSSNFQS 671
SN LMWLRG +GE G S NFQ+
Sbjct: 411 SNGLMWLRGGSGEPGLPSLNFQA 479
Score = 35.4 bits (71), Expect(2) = 3e-054
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3 / -2
Query: 664 KFEE*KPPSPVTPLSHIKALLSS 596
KF + +P SP+ PLSHIK LL+S
Sbjct: 472 KFRDGRPGSPLPPLSHIKPLLAS 404
Score = 33.1 bits (66), Expect(3) = 2e-083
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 687 WGQQRLHPSLLSNDHDQ 737
W QQRL P++L NDH+Q
Sbjct: 492 WMQQRLDPTMLGNDHNQ 542
>gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 582
Score = 248 bits (537), Expect = 3e-065
Identities = 105/120 (87%), Positives = 108/120 (90%)
Frame = +3 / -1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIR A RPQT MPSSVLSSDSMHIGLL
Sbjct: 360 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMHIGLLAAA 181
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGMRFRMLFETEESSVRRYM 380
TNSRFTIFYNPRASP+EFVIPL KYIKAV+HTR+SVGMRFRMLFETEESSVRRYM
Sbjct: 180 AHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYHTRVSVGMRFRMLFETEESSVRRYM 1
Score = 169 bits (363), Expect = 3e-041
Identities = 79/125 (63%), Positives = 90/125 (72%)
Frame = -3 / +2
Query: 379 MYLRTLDSSVSNNILNRIPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXX 200
MY RTLDSSVSN+ILN +PT+ V TAL+Y RG+TNS GLALGL* IVKRL V
Sbjct: 2 MYRRTLDSSVSNSILNLMPTETLVWYTALIYLTRGMTNSEGLALGL*NIVKRLLVAAA*A 181
Query: 199 XXARSPMCMLSLERTEEGITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPV 20
AR P+CMLSL++T+EG+ V GR A IP +WFFSF M TESPATSL ALT TL PV
Sbjct: 182 AAARRPICMLSLDKTDEGMKV*GRFARRIPKSNWFFSFQMKRTESPATSLFALTKTLHPV 361
Query: 19 SCRIL 5
R L
Sbjct: 362 VRRCL 376
>gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_B04 5', mRNA sequence
Length = 914
Score = 210 bits (452), Expect = 2e-053
Identities = 88/103 (85%), Positives = 91/103 (88%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIR A RPQT MPSSVLSSDSMHIGLL
Sbjct: 606 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMHIGLLAAA 785
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRISVGM 329
TNSRFTIFYNPRASP+EFVIPL KYIKAV+HTR+SVGM
Sbjct: 786 AHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYHTRVSVGM 914
Score = 139 bits (298), Expect = 3e-032
Identities = 65/108 (60%), Positives = 75/108 (69%)
Frame = -3 / -2
Query: 328 IPTDIRV*KTALMYFERGITNSVGLALGL*KIVKRLFVXXXXXXXARSPMCMLSLERTEE 149
+PT+ V TAL+Y RG+TNS GLALGL* IVKRL V AR P+CMLSL++T+E
Sbjct: 913 MPTETLVWYTALIYLTRGMTNSEGLALGL*NIVKRLLVAAA*AAAARRPICMLSLDKTDE 734
Query: 148 GITVCGRVACLIPSKSWFFSFHMNSTESPATSLLALTNTLQPVSCRIL 5
G+ V GR A IP +WFFSF M TESPATSL ALT TL PV R L
Sbjct: 733 GMKV*GRFARRIPKSNWFFSFQMKRTESPATSLFALTKTLHPVVRRCL 590
>gb|DT482117.1|DT482117 WS02533.BR_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_P08 5', mRNA sequence
Length = 662
Score = 161 bits (347), Expect(4) = 4e-052
Identities = 61/78 (78%), Positives = 69/78 (88%)
Frame = +3 / +3
Query: 366 VRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSL 545
+ RYMGTIT SD DPVRWP+S+WRSVKVGWDESTAGER PRVSLWEIEPLT+FPMYPSL
Sbjct: 60 ILRYMGTITGTSDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTSFPMYPSL 239
Query: 546 FPLRVKHPWYSGLAALHD 599
FPLR+K PW+ G ++L D
Sbjct: 240 FPLRLKRPWHPGSSSLLD 293
Score = 118 bits (253), Expect(2) = 1e-030
Identities = 53/79 (67%), Positives = 60/79 (75%)
Frame = -3 / -2
Query: 604 LSS*RAASPEYQGCLTRSGNRDGYIGKVVSGSISHRETLGGLSPAVDSSQPTFTDLQ*EL 425
L S + P QG +R GN DGY+GK+V GSISH++TLG LSPAVDSSQPT TD Q EL
Sbjct: 298 LLSSKDEDPGCQGRFSRRGNSDGYMGKLVKGSISHKDTLGCLSPAVDSSQPTLTDRQCEL 119
Query: 424 GQRTGSASLTSVIVPMYLR 368
GQRTGS SL VIVPMYL+
Sbjct: 118 GQRTGSRSLVPVIVPMYLK 62
Score = 35.9 bits (72), Expect(4) = 4e-052
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3 / +3
Query: 603 SNALMWLRGVTGEGGFHSSNFQS 671
SN L+WLRG +GE G S NFQ+
Sbjct: 309 SNGLIWLRGGSGEQGLPSLNFQA 377
Score = 35.0 bits (70), Expect(2) = 1e-030
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3 / -2
Query: 664 KFEE*KPPSPVTPLSHIKALLSS 596
KF + +P SP+ PLSHIK LL+S
Sbjct: 370 KFRDGRPCSPLPPLSHIKPLLAS 302
Score = 33.1 bits (66), Expect(4) = 4e-052
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3 / +3
Query: 687 WGQQRLHPSLLSNDHDQ 737
W QQRL P++L NDH+Q
Sbjct: 390 WMQQRLDPTMLGNDHNQ 440
Score = 31.3 bits (62), Expect(4) = 4e-052
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2 / +2
Query: 788 EAAIPTPSTTYAVPTGAVQSQSAVAATNTTASEPT 892
EAAI S +++P Q QS+VAA T+S T
Sbjct: 497 EAAIYAASAAFSIPPTV*QPQSSVAAAAATSSNAT 601
>gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_H09 3', mRNA sequence
Length = 716
Score = 99.6 bits (211), Expect(4) = 7e-040
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS FV++KRLVAGDS +F+ E +L +G+R R Q+ MPSSV+SS SMH+G+L
Sbjct: 51 TGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVARQQSSMPSSVISSQSMHLGVLATA 230
Query: 201 XXXXXTNSRFTIFYNPRAS 257
T + F ++Y PR S
Sbjct: 231 SHAVSTLTLFVVYYKPRTS 287
Score = 53.3 bits (110), Expect(4) = 7e-040
Identities = 20/32 (62%), Positives = 22/32 (68%)
Frame = +3 / +3
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEP 515
W S WRS+KV WDE + RP RVS WEIEP
Sbjct: 438 WNDSKWRSLKVQWDEPASISRPDRVSPWEIEP 533
Score = 45.1 bits (92), Expect(4) = 7e-040
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3 / +3
Query: 306 HTRISVGMRFRMLFETEESSVRRYMGTITEVSDADP 413
+ + +VGMRF+M FE E+S RR+ GTI V D P
Sbjct: 327 NNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP 434
Score = 22.6 bits (43), Expect(4) = 7e-040
Identities = 7/14 (50%), Positives = 13/14 (92%)
Frame = +3 / +3
Query: 261 TEFVIPLSKYIKAV 302
++F+I L+KY++AV
Sbjct: 285 SQFIISLNKYLEAV 326
>gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 520
Score = 154 bits (330), Expect = 1e-036
Identities = 63/100 (63%), Positives = 77/100 (77%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI NEK+ L++G+RHA R QT +PSSVLS+DSMHIG+L
Sbjct: 221 TGWSLFVGSKRLKAGDSVLFIRNEKSHLMVGVRHANRQQTTLPSSVLSADSMHIGVLAAA 400
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAVFHTRIS 320
S FTIFYNPRA P++FVIPL K+ K VF T++S
Sbjct: 401 AHAAGNRSPFTIFYNPRACPSDFVIPLIKFRKTVFGTQVS 520
>gb|BI129107.1|BI129107 G086P05Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 443
Score = 135 bits (290), Expect(2) = 3e-035
Identities = 52/69 (75%), Positives = 56/69 (81%)
Frame = +3 / +3
Query: 390 TEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHP 569
T +SD D VRWP+S WRSVKVGWDEST GER PRVSLWEIEPLTTFP YPS FPLR+K P
Sbjct: 3 TGISDLDVVRWPNSQWRSVKVGWDESTDGERQPRVSLWEIEPLTTFPTYPSPFPLRLKRP 182
Query: 570 WYSGLAALH 596
W GL + H
Sbjct: 183 WPPGLPSFH 209
Score = 33.6 bits (67), Expect(2) = 3e-035
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3 / +3
Query: 636 GEGGFHSSNFQSPGIGSWGQQRLHPSLLSNDHD 734
G+ G S NFQ G+ W Q R+ S+L +D
Sbjct: 267 GDCGIQSLNFQGTGVSPWVQPRVDASMLGLQND 365
>gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F07 3', mRNA sequence
Length = 434
Score = 97.3 bits (206), Expect(2) = 5e-035
Identities = 38/71 (53%), Positives = 49/71 (69%)
Frame = +3 / -2
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + DADP RW +S WR +KV WDE++ RP RVS
Sbjct: 247 SIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERVS 68
Query: 498 LWEIEPLTTFP 530
W+IEP P
Sbjct: 67 PWKIEPALAPP 35
Score = 71.2 bits (149), Expect(2) = 5e-035
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +3 / -2
Query: 129 RPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
R Q +PSSV+SS SMH+G+L T + FT++Y PR SP EF++P +Y+++V
Sbjct: 433 RQQGNVPSSVISSHSMHLGVLATAWHAVSTGTLFTVYYKPRTSPAEFIVPFDQYMESV 260
>gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q019A06 5', mRNA sequence
Length = 651
Score = 89.0 bits (188), Expect(3) = 2e-034
Identities = 37/94 (39%), Positives = 57/94 (60%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS FV+ K+LV+GD+VLF+ E +L LG+R A + + L + ++ L
Sbjct: 75 TGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAAQVKCGPTFPALWNQQLNHSSLADV 254
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
S F I+YNPRAS +EF+IP +K++K++
Sbjct: 255 ANAISMRSAFRIYYNPRASSSEFIIPFNKFLKSL 356
Score = 73.0 bits (153), Expect(3) = 2e-034
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTA 473
S GMR +M FETE+++ RRY G IT +S+ DP RWP S W+ + V WD+ A
Sbjct: 369 SSGMRVKMRFETEDAAERRYTGLITGISELDPTRWPGSKWKCLLVRWDDMEA 524
Score = 22.6 bits (43), Expect(3) = 2e-034
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3 / +3
Query: 480 RPPRVSLWEIEP 515
R RVS WE+EP
Sbjct: 528 RHSRVSPWEVEP 563
>gb|BI138876.1|BI138876 F118P18Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 289
Score = 141 bits (303), Expect = 6e-033
Identities = 60/93 (64%), Positives = 70/93 (75%)
Frame = +3 / -3
Query: 123 ATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
A R QT +PSSVLS+DSMHIG+L S FTIFYNPRA P++FVIPL K+ KAV
Sbjct: 284 ANRLQTTLPSSVLSADSMHIGVLAAAAHATANRSPFTIFYNPRACPSDFVIPLIKFRKAV 105
Query: 303 FHTRISVGMRFRMLFETEESSVRRYMGTITEVS 401
F T++SVGMRF M+FETEES RRYMGTI +S
Sbjct: 104 FGTQVSVGMRFGMMFETEESGKRRYMGTIVGIS 6
>gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 684
Score = 83.5 bits (176), Expect(2) = 2e-031
Identities = 36/94 (38%), Positives = 56/94 (59%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS V+ K+LV+GD+VLF+ E +L LG+R A + + L + ++ L
Sbjct: 51 TGWSASVNNKKLVSGDAVLFLRGEDGELRLGVRTAAQVKCGPTFPALWNQHLNQSSLADV 230
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
S F I+YNPRAS +EF+IP +K++K++
Sbjct: 231 ANAISMRSAFRIYYNPRASSSEFIIPFNKFLKSL 332
Score = 73.0 bits (153), Expect(2) = 2e-031
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTA 473
S GMR +M FETE+++ RRY G IT +S+ DP RWP S W+ + V WD+ A
Sbjct: 345 SSGMRVKMRFETEDAAERRYTGLITGISELDPTRWPGSKWKCLLVRWDDMEA 500
>gb|CX177283.1|CX177283 B04_69-106_04.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 588
Score = 136 bits (291), Expect = 3e-031
Identities = 52/70 (74%), Positives = 62/70 (88%)
Frame = +3 / +3
Query: 312 RISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPR 491
+IS+GMRFRM+FETEES RRYMGTIT +SD DPVRW +S WR+++VGWDESTAGER R
Sbjct: 12 QISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERRNR 191
Query: 492 VSLWEIEPLT 521
VS+WEIEP+T
Sbjct: 192 VSIWEIEPVT 221
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 122 bits (261), Expect(2) = 3e-031
Identities = 48/93 (51%), Positives = 67/93 (72%)
Frame = +3 / +2
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS+K+LVAGD+ +F+ E +L +G+R R QT MPSSV+SS SMH+G+L
Sbjct: 239 TGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQSMHLGVLATA 418
Query: 201 XXXXXTNSRFTIFYNPRASPTEFVIPLSKYIKA 299
T + F++FY PR S +EF++ L+KYI+A
Sbjct: 419 SHAIATGTLFSVFYKPRTSRSEFIVNLNKYIEA 517
Score = 33.1 bits (66), Expect(2) = 3e-031
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3 / +3
Query: 312 RISVGMRFRMLFETEESSVRRY 377
++SVGMRF+M FE EE RR+
Sbjct: 528 KLSVGMRFKMRFEGEEVPERRF 593
>gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_E05 5', mRNA sequence
Length = 779
Score = 102 bits (217), Expect(2) = 6e-028
Identities = 45/96 (46%), Positives = 59/96 (61%)
Frame = +3 / +3
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRVS 497
S+GMRF+M FE EE+ +R+ GTI + DADP RW +S WR +KV WDE++ RP RVS
Sbjct: 99 SIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERVS 278
Query: 498 LWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALHDDS 605
W+IEP P L R K P + + + DDS
Sbjct: 279 PWKIEPALAPPALNPLPLPRPKRPRANMMPSSPDDS 386
Score = 42.3 bits (86), Expect(2) = 6e-028
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3 / +3
Query: 228 FTIFYNPRASPTEFVIPLSKYIKAV 302
FT++Y PR SP EF++P +Y+++V
Sbjct: 12 FTVYYKPRTSPAEFIVPFDQYMESV 86
>gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P75 3', mRNA sequence
Length = 806
Score = 120 bits (256), Expect = 2e-026
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG+L
Sbjct: 570 TGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMHIGVLAAA 749
Query: 201 XXXXXTNSRFTIFYNPR 251
S FTIFYNPR
Sbjct: 750 AHATANRSPFTIFYNPR 800
>gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 503
Score = 57.4 bits (119), Expect(3) = 6e-026
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +3 / +1
Query: 99 QLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXXXXXXXTNSRFTIFYNPRAS 257
+L +G+R R Q+ +PSSV+SS SMH+G+L T + F ++Y PR +
Sbjct: 16 ELRVGVRRLARQQSSIPSSVISSQSMHLGVLATASHTVLTQTLFVVYYKPRTN 174
Score = 52.8 bits (109), Expect(3) = 6e-026
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 420 WPSSYWRSVKVGWDESTAGERPPRVSLWEIEP 515
W S WRS+K+ WDE +RP RVS W+IEP
Sbjct: 325 WSGSIWRSLKIQWDEPATIQRPERVSPWDIEP 420
Score = 45.5 bits (93), Expect(3) = 6e-026
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3 / +1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADP 413
SVGMRF+M FE E+S RR+ GTI V D P
Sbjct: 226 SVGMRFKMRFEGEDSPERRFTGTIVGVGDISP 321
>gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P27 3', mRNA sequence
Length = 860
Score = 96.4 bits (204), Expect(2) = 1e-025
Identities = 39/55 (70%), Positives = 48/55 (87%)
Frame = +3 / +3
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIG 185
TGWS+FV +KRL AGDSVLFI +EK+QL++G+R A R QT +PSSVLS+DSMHIG
Sbjct: 570 TGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMHIG 734
Score = 40.5 bits (82), Expect(2) = 1e-025
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3 / +1
Query: 180 IGLLXXXXXXXXTNSRFTIFYNPRASPTEFVIPL 281
+G+L S FYNPRA P++FVIPL
Sbjct: 730 LGVLAAAAHATANRSHSPFFYNPRACPSDFVIPL 831
>gb|CK102650.1|CK102650 G086P05.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G086P05 5', mRNA sequence
Length = 560
Score = 114 bits (244), Expect = 8e-025
Identities = 44/57 (77%), Positives = 47/57 (82%)
Frame = +3 / +2
Query: 426 SSYWRSVKVGWDESTAGERPPRVSLWEIEPLTTFPMYPSLFPLRVKHPWYSGLAALH 596
+S WRSVKVGWDEST GER PRVSLWEIEPLTTFP YPS FPLR+K PW GL + H
Sbjct: 2 NSQWRSVKVGWDESTDGERQPRVSLWEIEPLTTFPTYPSPFPLRLKRPWPPGLPSFH 172
>gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_P18 3', mRNA sequence
Length = 302
Score = 83.5 bits (176), Expect(2) = 7e-023
Identities = 32/59 (54%), Positives = 42/59 (71%)
Frame = +3 / -1
Query: 318 SVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWPSSYWRSVKVGWDESTAGERPPRV 494
S+GMRF+M FE EE+ +R+ GTI + DADP RW +S WR +KV WDE++ RP RV
Sbjct: 179 SIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERV 3
Score = 44.1 bits (90), Expect(2) = 7e-023
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3 / -1
Query: 216 TNSRFTIFYNPRASPTEFVIPLSKYIKAV 302
T + FT++Y PR SP EF++P +Y+++V
Sbjct: 278 TGTLFTVYYKPRTSPAEFIVPFDQYMESV 192
>gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_I14 3', mRNA sequence
Length = 898
Score = 101 bits (216), Expect = 6e-021
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +3 / +1
Query: 21 TGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRHATRPQTVMPSSVLSSDSMHIGLLXXX 200
TGWSVFVS+K+LVAGD+ +F+ E +L +G+R R QT MPSSV+SS SMH+G+L
Sbjct: 664 TGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQSMHLGVLATA 843
Query: 201 XXXXXTNSRFTIFYNPR 251
T + F++FY PR
Sbjct: 844 SHAIVTGTLFSVFYKPR 894
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 503,351,624
Number of Sequences: 369679
Number of extensions: 7410351
Number of successful extensions: 48968
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 13932661389
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)