TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950290.2.2
(867 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV272774.1|CV272774 WS0158.B21_K18 PTxN-IB-A-6 Populus t... 162 2e-056
gb|DN490325.1|DN490325 UK116TA12.3pR Populus apical shoot c... 153 4e-054
gb|CV237258.1|CV237258 WS01227.B21.1_B22 PT-GT-FL-A-3 Popul... 148 2e-051
gb|DT472794.1|DT472794 WS01227.BR_B22 PT-GT-FL-A-3 Populus ... 148 2e-051
gb|CK092521.1|CK092521 G086P30.3pR Populus tension wood cDN... 148 2e-051
gb|CK092698.1|CK092698 G092P18.3pR Populus tension wood cDN... 148 2e-051
gb|DT514453.1|DT514453 WS02424.B21_N19 PTxD-ICC-N-A-14 Popu... 148 2e-051
gb|CV273574.1|CV273574 WS01711.B21_H14 PTxD-NR-A-8 Populus ... 148 2e-051
gb|DT521801.1|DT521801 WS02035.B21_E06 PTxN-IB-N-A-11 Popul... 147 3e-051
gb|DT524557.1|DT524557 WS02042.C21.1_P19 PTxN-IB-N-A-11 Pop... 147 3e-051
gb|CV277660.1|CV277660 WS0144.B21_D08 PTxD-IL-A-5 Populus t... 147 4e-051
gb|CV238073.1|CV238073 WS0125.B21_D08 PT-GT-FL-A-3 Populus ... 142 1e-049
gb|BU832841.1|BU832841 T038H03 Populus apical shoot cDNA li... 143 2e-049
gb|AJ777718.1|AJ777718 AJ777718 Populus euphratica root 3-6... 109 7e-040
gb|BP936171.1|BP936171 BP936171 full-length enriched poplar... 101 2e-037
gb|CA924182.1|CA924182 MTU7CL.P2.F12 Aspen leaf cDNA Librar... 148 4e-035
gb|CA929296.1|CA929296 MTU2CA.P11.G03 Aspen apex cDNA Libra... 148 4e-035
gb|CA930110.1|CA930110 MTU2CA.P7.C01 Aspen apex cDNA Librar... 148 4e-035
gb|CA934471.1|CA934471 MTU3TS.P8.A12 Aspen stem cDNA Librar... 148 4e-035
gb|BU896314.1|BU896314 X038H03 Populus wood cDNA library Po... 148 6e-035
gb|CA929159.1|CA929159 MTU2CA.P8.G03 Aspen apex cDNA Librar... 144 5e-034
gb|CV235875.1|CV235875 WS01221.B21_P02 PT-GT-FL-A-3 Populus... 87 5e-033
gb|CA934697.1|CA934697 MTU5TS.P22.E08 Aspen stem cDNA Libra... 116 2e-029
gb|CV226419.1|CV226419 WS0164.B21_D12 PT-DX-A-7 Populus tri... 75 4e-028
gb|CN517839.1|CN517839 GQ0092.B3_A09 GQ009 Populus trichoca... 75 1e-027
gb|CV278815.1|CV278815 WS0147.B21_I02 PTxD-IL-A-5 Populus t... 75 8e-026
gb|CN518351.1|CN518351 GQ0093.B3_J12 GQ009 Populus trichoca... 108 4e-023
gb|CA923493.1|CA923493 MTU7CL.P11.B09 Aspen leaf cDNA Libra... 107 1e-022
>gb|CV272774.1|CV272774 WS0158.B21_K18 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_K18 3', mRNA sequence
Length = 945
Score = 162 bits (348), Expect(2) = 2e-056
Identities = 67/87 (77%), Positives = 77/87 (88%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA +YGL++L E IQDD DN+TRF++LAREPIIP TD+P KTSIVF+LEEGPG LFKALA
Sbjct: 788 AADIYGLNILLEKIQDDDDNITRFLILAREPIIPGTDRPHKTSIVFTLEEGPGMLFKALA 609
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
VFA RDINLTKIESRP ++RPLRV DD
Sbjct: 608 VFASRDINLTKIESRPQRKRPLRVVDD 528
Score = 111 bits (238), Expect(2) = 3e-027
Identities = 58/84 (69%), Positives = 61/84 (72%)
Frame = +3 / +1
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
T G LCGRLSIFV+LMSL ANTASAL S PGPSS KTMLVL GLSV G++GS ASI
Sbjct: 538 TLNGRFLCGRLSIFVKLMSLEANTASALNSMPGPSSRVKTMLVLWGLSVPGIIGSLASIK 717
Query: 759 KRVTLSLSS*IFSARTSNPYSLAA 830
KRV LS SS IFS R P AA
Sbjct: 718 KRVILSSSSWIFSNRMLRP*MSAA 789
Score = 77.6 bits (163), Expect(2) = 2e-056
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = -3 / -2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTD 425
V D + FDYLFY+D EASMA+P+ Q+AL +L+EFA+FLRVLG Y TD
Sbjct: 536 VDDSNKGSARYFDYLFYIDFEASMAEPRAQHALAHLQEFASFLRVLGCYATD 381
Score = 29.9 bits (59), Expect(2) = 3e-027
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3 / +1
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
SV * PRT + +ANS + +A * GSA++A
Sbjct: 382 SVA*QPRTRRKLANSCKCAKAC*ARGSAMEA 474
>gb|DN490325.1|DN490325 UK116TA12.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK116TA12 3', mRNA
sequence
Length = 748
Score = 153 bits (328), Expect(2) = 4e-054
Identities = 63/87 (72%), Positives = 76/87 (87%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA +YGL +L E IQDD DN+TRF++LAREP+IP +++P KTSIVF+LEEG G LFKALA
Sbjct: 713 AADIYGLSILLEKIQDDDDNITRFLILAREPMIPASNRPHKTSIVFTLEEGRGMLFKALA 534
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
VFALRDI+LTKIESRP ++RPLRV DD
Sbjct: 533 VFALRDIHLTKIESRPQRKRPLRVVDD 453
Score = 94.1 bits (199), Expect(2) = 8e-023
Identities = 52/84 (61%), Positives = 57/84 (67%)
Frame = +3 / +1
Query: 579 TRRGLSLCGRLSIFVRLMSLNANTASALKSCPGPSSSEKTMLVLNGLSVRGMMGSRASII 758
T G L GRLSIFV+ MSL ANTA AL S P PSS KTMLVL GL + G++GS ASI
Sbjct: 463 TLNGRFL*GRLSIFVKWMSLKANTARALNSMPRPSSRVKTMLVLWGLLLAGIIGSLASIK 642
Query: 759 KRVTLSLSS*IFSARTSNPYSLAA 830
KRV LS SS IFS R +P AA
Sbjct: 643 KRVILSSSSWIFSNRMLSP*MSAA 714
Score = 79.0 bits (166), Expect(2) = 4e-054
Identities = 31/52 (59%), Positives = 39/52 (75%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTD 425
V D + FDYLFY+D +ASMA+P+ Q+AL +L+EFA FLRVLG YPTD
Sbjct: 461 VDDSNKGSARYFDYLFYIDFDASMAEPRAQHALAHLQEFARFLRVLGCYPTD 306
Score = 33.1 bits (66), Expect(2) = 8e-023
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3 / +1
Query: 426 SVG*LPRTLKNVANSFRFPRAF*VFGSAIDA 518
SVG* PRT +N+ANS + +A GSA++A
Sbjct: 307 SVG*QPRTRRNLANSCKCAKACWARGSAMEA 399
>gb|CV237258.1|CV237258 WS01227.B21.1_B22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_B22 3', mRNA sequence
Length = 825
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 628 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 449
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 448 AFAFRNISLTKIESRPHRNRPIRLVDD 368
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 376 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 218
>gb|DT472794.1|DT472794 WS01227.BR_B22 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_B22 5', mRNA sequence
Length = 802
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / +1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 175 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 354
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 355 AFAFRNISLTKIESRPHRNRPIRLVDD 435
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 427 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 585
>gb|CK092521.1|CK092521 G086P30.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G086P30 3', mRNA sequence
Length = 798
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 663 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 484
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 483 AFAFRNISLTKIESRPHRNRPIRLVDD 403
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 411 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 253
>gb|CK092698.1|CK092698 G092P18.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P18 3', mRNA sequence
Length = 766
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/89 (67%), Positives = 75/89 (84%)
Frame = -3 / -1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYGL VLA+ IQDD NVTRF+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+
Sbjct: 679 AAELYGLQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLS 500
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCS 563
FA R+I+LTKIESRPH+ RP+R+ DD +
Sbjct: 499 AFAFRNISLTKIESRPHRNRPIRLVDDAN 413
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -3 / -1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 427 VDDANVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 269
>gb|DT514453.1|DT514453 WS02424.B21_N19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_N19 3', mRNA sequence
Length = 738
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 655 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 476
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 475 AFAFRNISLTKIESRPHRNRPIRLVDD 395
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 403 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 245
>gb|CV273574.1|CV273574 WS01711.B21_H14 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01711_H14 3', mRNA sequence
Length = 694
Score = 148 bits (318), Expect(2) = 2e-051
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 519 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 340
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 339 AFAFRNISLTKIESRPHRNRPIRLVDD 259
Score = 74.8 bits (157), Expect(2) = 2e-051
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 267 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 109
>gb|DT521801.1|DT521801 WS02035.B21_E06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02035_E06 3', mRNA sequence
Length = 873
Score = 147 bits (316), Expect(2) = 3e-051
Identities = 59/89 (66%), Positives = 75/89 (84%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+
Sbjct: 680 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLS 501
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCS 563
FA R+I+LTKIESRPH+ RP+R+ DD +
Sbjct: 500 AFAFRNISLTKIESRPHRNRPIRLVDDAN 414
Score = 74.8 bits (157), Expect(2) = 3e-051
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -3 / -2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 428 VDDANVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 270
>gb|DT524557.1|DT524557 WS02042.C21.1_P19 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_P19 3', mRNA sequence
Length = 844
Score = 147 bits (316), Expect(2) = 3e-051
Identities = 59/89 (66%), Positives = 75/89 (84%)
Frame = -3 / -1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+
Sbjct: 697 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLS 518
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCS 563
FA R+I+LTKIESRPH+ RP+R+ DD +
Sbjct: 517 AFAFRNISLTKIESRPHRNRPIRLVDDAN 431
Score = 74.8 bits (157), Expect(2) = 3e-051
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -3 / -1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 445 VDDANVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 287
>gb|CV277660.1|CV277660 WS0144.B21_D08 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0144_D08 3', mRNA sequence
Length = 872
Score = 147 bits (315), Expect(2) = 4e-051
Identities = 59/89 (66%), Positives = 75/89 (84%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+
Sbjct: 697 AAELYGMQVLADGIQDDSGNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLS 518
Query: 649 VFALRDINLTKIESRPHKERPLRVSDDCS 563
FA R+I+LTKIESRPH+ RP+R+ DD +
Sbjct: 517 AFAFRNISLTKIESRPHRNRPIRLVDDAN 431
Score = 74.8 bits (157), Expect(2) = 4e-051
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -3 / -2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 445 VDDANVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 287
>gb|CV238073.1|CV238073 WS0125.B21_D08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_D08 3', mRNA sequence
Length = 642
Score = 142 bits (305), Expect(2) = 1e-049
Identities = 57/83 (68%), Positives = 70/83 (84%)
Frame = -3 / -3
Query: 817 YGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFAL 638
YG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+ FA
Sbjct: 640 YGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 461
Query: 637 RDINLTKIESRPHKERPLRVSDD 569
R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 460 RNISLTKIESRPHRNRPIRLVDD 392
Score = 74.8 bits (157), Expect(2) = 1e-049
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 400 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 242
>gb|BU832841.1|BU832841 T038H03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 667
Score = 143 bits (307), Expect(2) = 2e-049
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = -3 / +1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+L G+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 175 AAEL*GMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 354
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 355 AFAFRNISLTKIESRPHRNRPIRLVDD 435
Score = 73.0 bits (153), Expect(2) = 2e-049
Identities = 28/53 (52%), Positives = 39/53 (73%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EAS+A+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 427 VDDGNVGTAKHFEYMFYIDFEASVAEVRAQNALAEVQEFTSFLRVLGSYPMDM 585
>gb|AJ777718.1|AJ777718 AJ777718 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400034B04F1, mRNA sequence
Length = 596
Score = 109 bits (233), Expect(2) = 7e-040
Identities = 43/66 (65%), Positives = 56/66 (84%)
Frame = -3 / +1
Query: 760 FMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLR 581
F+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+ FA R+I+LTKIESRPH+ RP+R
Sbjct: 1 FVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIR 180
Query: 580 VSDDCS 563
+ DD +
Sbjct: 181 LVDDAN 198
Score = 74.8 bits (157), Expect(2) = 7e-040
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = -3 / +1
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FYVD EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 184 VDDANVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 342
>gb|BP936171.1|BP936171 BP936171 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-087_B06.r 3', mRNA sequence
Length = 545
Score = 101 bits (215), Expect(2) = 2e-037
Identities = 40/59 (67%), Positives = 50/59 (84%)
Frame = -3 / -2
Query: 745 REPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
REPIIPRTD+PFKTSIVF+ ++G LFK L+ FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 544 REPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDD 368
Score = 74.8 bits (157), Expect(2) = 2e-037
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 376 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 218
>gb|CA924182.1|CA924182 MTU7CL.P2.F12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 680
Score = 148 bits (318), Expect = 4e-035
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / +1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 415 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 594
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 595 AFAFRNISLTKIESRPHRNRPIRLVDD 675
>gb|CA929296.1|CA929296 MTU2CA.P11.G03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 627
Score = 148 bits (318), Expect = 4e-035
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 290 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 111
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 110 AFAFRNISLTKIESRPHRNRPIRLVDD 30
>gb|CA930110.1|CA930110 MTU2CA.P7.C01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 367
Score = 148 bits (318), Expect = 4e-035
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 290 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 111
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 110 AFAFRNISLTKIESRPHRNRPIRLVDD 30
>gb|CA934471.1|CA934471 MTU3TS.P8.A12 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 649
Score = 148 bits (318), Expect = 4e-035
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 290 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 111
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 110 AFAFRNISLTKIESRPHRNRPIRLVDD 30
>gb|BU896314.1|BU896314 X038H03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 696
Score = 148 bits (317), Expect = 6e-035
Identities = 60/87 (68%), Positives = 74/87 (85%)
Frame = -3 / +2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYGL VLA+ IQDD NVTRF+MLAREPIIPRTD+PF+TSIVF+ ++G LFK L+
Sbjct: 431 AAELYGLQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFRTSIVFAHDKGTSVLFKVLS 610
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 611 AFAFRNISLTKIESRPHRNRPIRLVDD 691
>gb|CA929159.1|CA929159 MTU2CA.P8.G03 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 300
Score = 144 bits (310), Expect = 5e-034
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = -3 / -2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LY + VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 290 AAELYRMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 111
Query: 649 VFALRDINLTKIESRPHKERPLRVSDD 569
FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 110 AFAFRNISLTKIESRPHRNRPIRLVDD 30
>gb|CV235875.1|CV235875 WS01221.B21_P02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_P02 3', mRNA sequence
Length = 598
Score = 86.8 bits (183), Expect(2) = 5e-033
Identities = 34/53 (64%), Positives = 44/53 (83%)
Frame = -3 / -3
Query: 727 RTDKPFKTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
RTD+PFKTSIVF+ ++G LFK L+ FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 596 RTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDD 438
Score = 74.8 bits (157), Expect(2) = 5e-033
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 446 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 288
>gb|CA934697.1|CA934697 MTU5TS.P22.E08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 507
Score = 116 bits (248), Expect(2) = 2e-029
Identities = 48/70 (68%), Positives = 59/70 (84%)
Frame = -3 / -3
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 286 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 107
Query: 649 VFALRDINLT 620
FA R+I+LT
Sbjct: 106 AFAFRNISLT 77
Score = 32.7 bits (65), Expect(2) = 2e-029
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -3 / -2
Query: 616 IESRPHKERPLRVSDD 569
IESRPH+ RP+R+ DD
Sbjct: 77 IESRPHRNRPIRLVDD 30
>gb|CV226419.1|CV226419 WS0164.B21_D12 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_D12
3', mRNA sequence
Length = 499
Score = 74.8 bits (157), Expect(2) = 4e-028
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 134 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 292
Score = 70.3 bits (147), Expect(2) = 4e-028
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
KTSIVF+ + G LFK L+ FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 2 KTSIVFAHD*GTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDD 142
>gb|CN517839.1|CN517839 GQ0092.B3_A09 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_A09 5', mRNA sequence
Length = 512
Score = 74.8 bits (157), Expect(2) = 1e-027
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / +2
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 152 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 310
Score = 68.9 bits (144), Expect(2) = 1e-027
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = -3 / +2
Query: 709 KTSIVFSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
KTSIVF+ ++G LFK L+ FA R I+LTKIES PH+ RP+R+ DD
Sbjct: 20 KTSIVFAHDKGTSVLFKVLSAFAFRXISLTKIESXPHRNRPIRLVDD 160
>gb|CV278815.1|CV278815 WS0147.B21_I02 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0147_I02 3', mRNA sequence
Length = 516
Score = 74.8 bits (157), Expect(2) = 8e-026
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = -3 / -3
Query: 580 VSDDCSSLLKNFDYLFYVDLEASMADPKTQNALGNLKEFATFLRVLGSYPTDV 422
V D K+F+Y+FY+D EASMA+ + QNAL ++EF +FLRVLGSYP D+
Sbjct: 397 VDDGNVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 239
Score = 62.5 bits (130), Expect(2) = 8e-026
Identities = 24/42 (57%), Positives = 33/42 (78%)
Frame = -3 / -3
Query: 694 FSLEEGPGQLFKALAVFALRDINLTKIESRPHKERPLRVSDD 569
F+ ++G LFK L+ FA R+I+LTKIESRPH+ RP+R+ DD
Sbjct: 514 FAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDD 389
>gb|CN518351.1|CN518351 GQ0093.B3_J12 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_J12 5', mRNA sequence
Length = 455
Score = 108 bits (231), Expect = 4e-023
Identities = 46/74 (62%), Positives = 57/74 (77%)
Frame = -3 / +2
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPR D+PF+TSIVF+ ++G LF L+
Sbjct: 233 AAELYGMQVLADGIQDDSGNVTRFVMLAREPIIPRXDRPFRTSIVFAHDKGTSVLFXXLS 412
Query: 649 VFALRDINLTKIES 608
FA I+LT ES
Sbjct: 413 XFAFXXISLTXXES 454
>gb|CA923493.1|CA923493 MTU7CL.P11.B09 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 607
Score = 107 bits (228), Expect = 1e-022
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = -3 / +1
Query: 829 AAKLYGLDVLAENIQDDKDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALA 650
AA+LYG+ VLA+ IQDD NVTRF+MLAREPIIPRTD+PFKTSIVF+ ++G LFK L+
Sbjct: 415 AAELYGMQVLADGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 594
Query: 649 VFA 641
FA
Sbjct: 595 AFA 603
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 407,686,276
Number of Sequences: 369679
Number of extensions: 5430862
Number of successful extensions: 33125
Number of sequences better than 1.0e-020: 31
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11464780880
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)