TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK320389.1|CK320389 L3P05d10 Populus stem seasonal libra... 138 4e-032
gb|DT509002.1|DT509002 WS02422.BR_I07 PTxD-ICC-N-A-14 Popul... 136 2e-031
gb|DT513609.1|DT513609 WS02422.B21_I07 PTxD-ICC-N-A-14 Popu... 136 2e-031
gb|DT514871.1|DT514871 WS02426.B21_A05 PTxD-ICC-N-A-14 Popu... 136 2e-031
gb|DT516146.1|DT516146 WS02430.B21_I16 PTxD-ICC-N-A-14 Popu... 136 2e-031
gb|DT517940.1|DT517940 WS02435.B21_L21 PTxD-ICC-N-A-14 Popu... 136 2e-031
gb|DN493003.1|DN493003 X051B06.3pR Populus wood cDNA librar... 111 6e-024
>gb|CK320389.1|CK320389 L3P05d10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 832
Score = 138 bits (295), Expect = 4e-032
Identities = 56/83 (67%), Positives = 66/83 (79%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP+FAGFVD D++ K++LRSLID SVVESFGAGG+T I SRVYP+IAV + AHLYVF
Sbjct: 401 LYKPSFAGFVDVDLTDKKLSLRSLIDHSVVESFGAGGRTAITSRVYPTIAVFEKAHLYVF 580
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG +TV L AW M P+MN
Sbjct: 581 NNGSETITVENLNAWSMNLPVMN 649
>gb|DT509002.1|DT509002 WS02422.BR_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_I07 5', mRNA sequence
Length = 634
Score = 136 bits (291), Expect = 2e-031
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +3 / +2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP FAGFVD D++ K+TLRSLID SVVESFGAGG+T I SRVYP IAV AHL+VF
Sbjct: 263 LYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVF 442
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG VTV L AW MK P+MN
Sbjct: 443 NNGSETVTVETLNAWSMKVPVMN 511
>gb|DT513609.1|DT513609 WS02422.B21_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_I07 3', mRNA sequence
Length = 634
Score = 136 bits (291), Expect = 2e-031
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP FAGFVD D++ K+TLRSLID SVVESFGAGG+T I SRVYP IAV AHL+VF
Sbjct: 372 LYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVF 193
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG VTV L AW MK P+MN
Sbjct: 192 NNGSETVTVETLNAWSMKVPVMN 124
>gb|DT514871.1|DT514871 WS02426.B21_A05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_A05 3', mRNA sequence
Length = 857
Score = 136 bits (291), Expect = 2e-031
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +3 / -1
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP FAGFVD D++ K+TLRSLID SVVESFGAGG+T I SRVYP IAV AHL+VF
Sbjct: 377 LYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVF 198
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG VTV L AW MK P+MN
Sbjct: 197 NNGSETVTVETLNAWSMKVPVMN 129
>gb|DT516146.1|DT516146 WS02430.B21_I16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_I16 3', mRNA sequence
Length = 893
Score = 136 bits (291), Expect = 2e-031
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP FAGFVD D++ K+TLRSLID SVVESFGAGG+T I SRVYP IAV AHL+VF
Sbjct: 382 LYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVF 203
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG VTV L AW MK P+MN
Sbjct: 202 NNGSETVTVETLNAWSMKVPVMN 134
>gb|DT517940.1|DT517940 WS02435.B21_L21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_L21 3', mRNA sequence
Length = 904
Score = 136 bits (291), Expect = 2e-031
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +3 / -2
Query: 63 LYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVF 242
LYKP FAGFVD D++ K+TLRSLID SVVESFGAGG+T I SRVYP IAV AHL+VF
Sbjct: 384 LYKPPFAGFVDVDLTDKKLTLRSLIDHSVVESFGAGGRTVITSRVYPIIAVFDKAHLFVF 205
Query: 243 NNGEVDVTVSGLTAWEMKKPLMN 311
NNG VTV L AW MK P+MN
Sbjct: 204 NNGSETVTVETLNAWSMKVPVMN 136
>gb|DN493003.1|DN493003 X051B06.3pR Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA clone X051B06 3', mRNA sequence
Length = 780
Score = 111 bits (236), Expect = 6e-024
Identities = 41/81 (50%), Positives = 57/81 (70%)
Frame = +3 / -2
Query: 69 KPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNN 248
K T+ F+D D I+LRSLID S++ESFG G+ CI +RVYP +A+ ++AHL++FNN
Sbjct: 587 KTTYGAFIDIDPQRENISLRSLIDHSIIESFGGEGRACITNRVYPKLAIHEEAHLFIFNN 408
Query: 249 GEVDVTVSGLTAWEMKKPLMN 311
G + VT+S L AW M K +N
Sbjct: 407 GTLSVTISSLNAWSMNKAQIN 345
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 269,391,237
Number of Sequences: 369679
Number of extensions: 3161515
Number of successful extensions: 38883
Number of sequences better than 1.0e-020: 7
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8223475512
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)