TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2850725.2.1
(847 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus... 100 8e-032
gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus... 100 8e-032
gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populu... 98 3e-031
gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populu... 98 3e-031
gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Popul... 98 3e-031
gb|DN488662.1|DN488662 S021B06.3pR Populus imbibed seed cDN... 135 4e-031
gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium... 102 5e-031
gb|CA932779.1|CA932779 MTU5CS.P17.C10 Aspen stem cDNA Libra... 88 2e-026
gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6... 75 8e-026
gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus... 76 7e-025
gb|CV225757.1|CV225757 WS0162.B21_E24 PT-DX-A-7 Populus tri... 96 6e-024
gb|DN490332.1|DN490332 UK116TF06.3pR Populus apical shoot c... 88 1e-023
gb|CX659487.1|CX659487 PO01031C05 Poplar SC cDNA library Po... 95 2e-023
gb|CX659497.1|CX659497 PO01031D04 Poplar SC cDNA library Po... 95 2e-023
gb|CX659511.1|CX659511 PO01031E10 Poplar SC cDNA library Po... 95 2e-023
gb|DT493173.1|DT493173 WS02553.C21_J21 PT-MB-N-A-15 Populus... 82 4e-023
gb|CV239394.1|CV239394 WS0232.B21_E06 PT-MB-A-13 Populus tr... 82 4e-023
gb|DT489174.1|DT489174 WS02538.B21_H23 PT-MB-N-A-15 Populus... 82 4e-023
gb|CV234439.1|CV234439 WS01214.B21_O21 PT-GT-FL-A-3 Populus... 82 4e-023
gb|CA933451.1|CA933451 MTU5CS.P8.C02 Aspen stem cDNA Librar... 75 1e-022
gb|CA932285.1|CA932285 MTU5CS.P11.A06 Aspen stem cDNA Libra... 75 1e-022
gb|CV240212.1|CV240212 WS0234.B21_M02 PT-MB-A-13 Populus tr... 80 1e-022
emb|AJ698925.1| Populus deltoides x Populus maximowiczii pa... 70 1e-021
>gb|DT476355.1|DT476355 WS01229.B21_E11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_E11 3', mRNA sequence
Length = 887
Score = 99.6 bits (211), Expect(2) = 8e-032
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = -1 / -2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +AFP + TVLDLP + + + YV GDMF+++P A+ +LLK +LH
Sbjct: 700 GIGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKYVAGDMFQAVPPAEAILLKWMLH 521
Query: 652 HWSDEDCVKILANCRKAIPSR 590
+WSDEDCVKIL C++AI S+
Sbjct: 520 NWSDEDCVKILKRCKQAIMSK 458
Score = 57.9 bits (120), Expect(2) = 8e-032
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = -1 / -2
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP*GISSIDQ 344
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP* S
Sbjct: 382 ETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP**DLSNVL 203
Query: 343 HRLYIVVWYCEEIYITKI 290
H L + V + + ++KI
Sbjct: 202 HLLRLSVKIHDIMILSKI 149
>gb|CV235235.1|CV235235 WS01218.B21_E23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01218_E23 3', mRNA sequence
Length = 714
Score = 99.6 bits (211), Expect(2) = 8e-032
Identities = 39/81 (48%), Positives = 55/81 (67%)
Frame = -1 / -1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +AFP + TVLDLP + + + YV GDMF+++P A+ +LLK +LH
Sbjct: 690 GIGTMAKGITEAFPTMDCTVLDLPHVVFDLQGCKNLKYVAGDMFQAVPPAEAILLKWMLH 511
Query: 652 HWSDEDCVKILANCRKAIPSR 590
+WSDEDCVKIL C++AI S+
Sbjct: 510 NWSDEDCVKILKRCKQAIMSK 448
Score = 57.9 bits (120), Expect(2) = 8e-032
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = -1 / -1
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP*GISSIDQ 344
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP* S
Sbjct: 372 ETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP**DLSNVL 193
Query: 343 HRLYIVVWYCEEIYITKI 290
H L + V + + ++KI
Sbjct: 192 HLLRLSVKIHDIMILSKI 139
>gb|CV280707.1|CV280707 WS0137.B21_G07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_G07 3', mRNA sequence
Length = 919
Score = 98.2 bits (208), Expect(2) = 3e-031
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = -1 / -2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +AFP + TVLDLP + + + +V GDMF+++P A+ +LLK +LH
Sbjct: 633 GLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFVAGDMFQAVPPAEAILLKWILH 454
Query: 652 HWSDEDCVKILANCRKAIPSR 590
+WSDEDCVKIL C++AI S+
Sbjct: 453 NWSDEDCVKILKRCKQAIMSK 391
Score = 57.4 bits (119), Expect(2) = 3e-031
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -1 / -2
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP*
Sbjct: 315 ETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 157
>gb|CV280517.1|CV280517 WS0136.B21_J20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0136_J20 3', mRNA sequence
Length = 893
Score = 98.2 bits (208), Expect(2) = 3e-031
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = -1 / -2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +AFP + TVLDLP + + + +V GDMF+++P A+ +LLK +LH
Sbjct: 625 GLGTMAKGITEAFPHMDCTVLDLPHVVSDLQGCKNLKFVAGDMFQAVPPAEAILLKWILH 446
Query: 652 HWSDEDCVKILANCRKAIPSR 590
+WSDEDCVKIL C++AI S+
Sbjct: 445 NWSDEDCVKILKRCKQAIMSK 383
Score = 57.4 bits (119), Expect(2) = 3e-031
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -1 / -2
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP*
Sbjct: 307 ETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 149
>gb|DT504273.1|DT504273 WS01312.B21_L07 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01312_L07 3', mRNA sequence
Length = 822
Score = 98.2 bits (208), Expect(2) = 3e-031
Identities = 38/81 (46%), Positives = 55/81 (67%)
Frame = -1 / -1
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT + +AFP + TVLDLP + + + +V GDMF+++P A+ +LLK +LH
Sbjct: 654 GLGTMAKGITEAFPPMDCTVLDLPHVVSDLQGCKNLKFVAGDMFQAVPPAEAILLKWILH 475
Query: 652 HWSDEDCVKILANCRKAIPSR 590
+WSDEDCVKIL C++AI S+
Sbjct: 474 NWSDEDCVKILKRCKQAIMSK 412
Score = 57.4 bits (119), Expect(2) = 3e-031
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = -1 / -1
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP*
Sbjct: 336 ETQLFFDLQMMVVAGGMERNEKEWAKLFFDAGFLNYKIYPVLGPRALIELYP* 178
>gb|DN488662.1|DN488662 S021B06.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S021B06 3', mRNA sequence
Length = 568
Score = 135 bits (289), Expect = 4e-031
Identities = 56/148 (37%), Positives = 88/148 (59%)
Frame = -1 / -3
Query: 796 FPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILA 617
F + TV DLP + + + Y+GGDMF++IP+A +LLK +LH W++E+CVKIL
Sbjct: 512 FQHLDCTVFDLPHVVAGLEGSENLKYLGGDMFEAIPQADAILLKWILHDWNEEECVKILK 333
Query: 616 NCRKAIPSREEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQ 437
C++ I R G ++I ++ + +TQL D+ MM++ G++R+ +W L
Sbjct: 332 QCKEEIKGRGGGKVIIIDMVVENNKEEEGSTETQLFFDMLMMILVTGKERNEKEWAKLFT 153
Query: 436 KAGFSDYKLLKKFGARGVLEIYP*GISS 353
AGFS YK+ G R ++E+YP* SS
Sbjct: 152 DAGFSHYKINPVLGLRSLIEVYP**PSS 69
>gb|CK096481.1|CK096481 UB15CPH11.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB15CPH11 3', mRNA sequence
Length = 882
Score = 102 bits (218), Expect(2) = 5e-031
Identities = 41/81 (50%), Positives = 54/81 (66%)
Frame = -1 / -2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G GT +A+AFP + TV DLP + + + YVGGDMF+ +P A+ +LLK +LH
Sbjct: 659 GLGTMAKGIAEAFPHMDCTVFDLPHVVSDLQGCKNLKYVGGDMFQGVPPAEAILLKWILH 480
Query: 652 HWSDEDCVKILANCRKAIPSR 590
WSDEDCVKIL CR+AI S+
Sbjct: 479 DWSDEDCVKILKRCRQAIMSK 417
Score = 51.9 bits (107), Expect(2) = 5e-031
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = -1 / -2
Query: 592 REEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYK 413
++ G ++I +I + +TQLL D+ MM+ G +R+ +W L AGF +YK
Sbjct: 410 QKAGKVIIIDMVIENLNGDEGSIETQLLFDLHMMVDADGMERNEKEWAKLFFDAGFLNYK 231
Query: 412 LLKKFGARGVLEIYP* 365
+ R ++E+YP*
Sbjct: 230 IHPVLATRALIELYP* 183
>gb|CA932779.1|CA932779 MTU5CS.P17.C10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 624
Score = 87.7 bits (185), Expect(2) = 2e-026
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = -1 / -1
Query: 799 AFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKIL 620
AFP + TV +LP + + + YV GDMF+ +P A+ +LLK +LH WSDEDCVKIL
Sbjct: 624 AFPHMDCTVFELPHVVSDLQGCKNLKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKIL 445
Query: 619 ANCRKAIPSR 590
C++AI S+
Sbjct: 444 KRCKQAITSK 415
Score = 51.5 bits (106), Expect(2) = 2e-026
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = -1 / -1
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQLL D+ MM+ G +R+ +W L AGF +YK+ R ++E+YP*
Sbjct: 339 ETQLLFDLEMMVAASGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>gb|AJ772970.1|AJ772970 AJ772970 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000200003B11F1, mRNA sequence
Length = 597
Score = 75.3 bits (158), Expect(3) = 8e-026
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = -1 / +2
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIPSR 590
+ YVGGDMF+++P A ++LLK LH W+DEDCVKIL C+ AI S+
Sbjct: 284 LKYVGGDMFEAVPPADVILLKWTLHDWNDEDCVKILKQCKHAIMSK 421
Score = 46.9 bits (96), Expect(3) = 8e-026
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = -1 / +2
Query: 592 REEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGF 425
+++ GKV+I DI+ +G +TQLL D+ MM+ G +R+ +W L AGF
Sbjct: 425 QQKAGKVIIIDIVRGSQNGDESNETQLLWDLEMMVTVTGLERNEMEWAKLFFDAGF 592
Score = 32.7 bits (65), Expect(3) = 8e-026
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1 / +2
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPA 737
G GT +A+AFP + TV DLP+ + + A
Sbjct: 176 GSGTMAKGIAEAFPHMDCTVFDLPRVVFDLQA 271
>gb|CV234783.1|CV234783 WS01216.B21_E17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01216_E17 3', mRNA sequence
Length = 633
Score = 76.2 bits (160), Expect(2) = 7e-025
Identities = 27/46 (58%), Positives = 38/46 (82%)
Frame = -1 / -1
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIPSR 590
+ YV GDMF+++P A+ +LLK +LH+WSDEDCVKIL C++AI S+
Sbjct: 585 LKYVAGDMFQAVPPAEAILLKWMLHNWSDEDCVKILKRCKQAIMSK 448
Score = 57.9 bits (120), Expect(2) = 7e-025
Identities = 28/78 (35%), Positives = 45/78 (57%)
Frame = -1 / -1
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP*GISSIDQ 344
+TQL D+ MM++ GG +R+ +W L AGF +YK+ G R ++E+YP* S
Sbjct: 372 ETQLFFDLQMMVVVGGMERNEKEWAKLFFDAGFLNYKIHPVLGTRALIELYP**DLSNVL 193
Query: 343 HRLYIVVWYCEEIYITKI 290
H L + V + + ++KI
Sbjct: 192 HLLRLSVKIHDIMILSKI 139
>gb|CV225757.1|CV225757 WS0162.B21_E24 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_E24
3', mRNA sequence
Length = 920
Score = 96.4 bits (204), Expect(2) = 6e-024
Identities = 39/81 (48%), Positives = 51/81 (62%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G G + KA+P IK DLP + PA V++VGG+ F++IP A + +K VLH
Sbjct: 453 GTGGNLAEIVKAYPHIKGINFDLPHVVAAAPAYNGVSHVGGNFFEAIPNADSIFMKWVLH 632
Query: 652 HWSDEDCVKILANCRKAIPSR 590
W DEDCVKIL NCRKA+P +
Sbjct: 633 DWGDEDCVKILKNCRKAMPEK 695
Score = 34.5 bits (69), Expect(2) = 6e-024
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -1 / +3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIY 371
GG++R +W+ L+++ GF YK++ ++E Y
Sbjct: 801 GGKERTELEWKKLLEEGGFPRYKIINIPALPSIIEAY 911
>gb|DN490332.1|DN490332 UK116TF06.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK116TF06 3', mRNA
sequence
Length = 805
Score = 87.7 bits (185), Expect(2) = 1e-023
Identities = 35/81 (43%), Positives = 50/81 (61%)
Frame = -1 / -3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G G + +A+P IK LDLP + P V++V G+MF +IP A + +K +LH
Sbjct: 695 GIGRNVAEIVRAYPHIKGINLDLPHVVATAPKYEGVSHVAGNMFDAIPNADAIFMKRILH 516
Query: 652 HWSDEDCVKILANCRKAIPSR 590
W+DE CV+IL NC+KAIP +
Sbjct: 515 DWTDESCVEILRNCKKAIPEK 453
Score = 42.3 bits (86), Expect(2) = 1e-023
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = -1 / -3
Query: 481 GGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
GG++R +W+ L++ GF+ YK++K ++E YP
Sbjct: 344 GGKERTEQEWKKLLEDGGFARYKIIKIPALESIIEAYP 231
>gb|CX659487.1|CX659487 PO01031C05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031C05 5', mRNA sequence
Length = 621
Score = 95.0 bits (201), Expect(2) = 2e-023
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G+GTT L KAFP I+ DLP + P V +VGGD F+S+P+A L VLH
Sbjct: 15 GNGTTLQMLVKAFPCIQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLH 194
Query: 652 HWSDEDCVKILANCRKAIPS 593
W+DE+C++IL NC++AI S
Sbjct: 195 DWNDEECIQILKNCKEAIQS 254
Score = 34.5 bits (69), Expect(2) = 2e-023
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -1 / +3
Query: 589 EEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKL 410
++G +++ ++ + + F +L V M G++R +W ++++AGFS Y +
Sbjct: 255 DKGKVIIVEAVVGEEKGDKLEFVRLMLDMVMMSHTDAGKERTSKEWEYVLKEAGFSSYTI 434
Query: 409 LKKFGARGVLEIYP* 365
+ V+ P*
Sbjct: 435 KPIRAVQSVIVASP* 479
>gb|CX659497.1|CX659497 PO01031D04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031D04 5', mRNA sequence
Length = 621
Score = 95.0 bits (201), Expect(2) = 2e-023
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G+GTT L KAFP I+ DLP + P V +VGGD F+S+P+A L VLH
Sbjct: 15 GNGTTLQMLVKAFPCIQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLH 194
Query: 652 HWSDEDCVKILANCRKAIPS 593
W+DE+C++IL NC++AI S
Sbjct: 195 DWNDEECIQILKNCKEAIQS 254
Score = 34.5 bits (69), Expect(2) = 2e-023
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -1 / +3
Query: 589 EEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKL 410
++G +++ ++ + + F +L V M G++R +W ++++AGFS Y +
Sbjct: 255 DKGKVIIVEAVVGEEKGDKLEFVRLMLDMVMMSHTDAGKERTSKEWEYVLKEAGFSSYTI 434
Query: 409 LKKFGARGVLEIYP* 365
+ V+ P*
Sbjct: 435 KPIRAVQSVIVASP* 479
>gb|CX659511.1|CX659511 PO01031E10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031E10 5', mRNA sequence
Length = 621
Score = 95.0 bits (201), Expect(2) = 2e-023
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = -1 / +3
Query: 832 GDGTTGNSLAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLH 653
G+GTT L KAFP I+ DLP + P V +VGGD F+S+P+A L VLH
Sbjct: 15 GNGTTLQMLVKAFPCIQGINFDLPHVVSAAPESEGVQHVGGDFFQSVPKADAAFLMWVLH 194
Query: 652 HWSDEDCVKILANCRKAIPS 593
W+DE+C++IL NC++AI S
Sbjct: 195 DWNDEECIQILKNCKEAIQS 254
Score = 34.5 bits (69), Expect(2) = 2e-023
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -1 / +3
Query: 589 EEGGKVVIADIILDPASGPVMFQTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKL 410
++G +++ ++ + + F +L V M G++R +W ++++AGFS Y +
Sbjct: 255 DKGKVIIVEAVVGEEKGDKLEFVRLMLDMVMMSHTDAGKERTSKEWEYVLKEAGFSSYTI 434
Query: 409 LKKFGARGVLEIYP* 365
+ V+ P*
Sbjct: 435 KPIRAVQSVIVASP* 479
>gb|DT493173.1|DT493173 WS02553.C21_J21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_J21 3', mRNA sequence
Length = 822
Score = 81.7 bits (172), Expect(2) = 4e-023
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = -1 / -1
Query: 808 LAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCV 629
+ +A+P I+ DLP + P V++V G+MF++IP A + ++ +LH W+DE CV
Sbjct: 633 IVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCV 454
Query: 628 KILANCRKAIPSR 590
+IL NC+KAIP +
Sbjct: 453 EILRNCKKAIPEK 415
Score = 46.4 bits (95), Expect(2) = 4e-023
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1 / -1
Query: 502 VCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
V L GG++R +W+ L+++ GFS YK++K ++E YP
Sbjct: 327 VMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 193
>gb|CV239394.1|CV239394 WS0232.B21_E06 PT-MB-A-13 Populus trichocarpa cDNA clone WS0232_E06
3', mRNA sequence
Length = 709
Score = 81.7 bits (172), Expect(2) = 4e-023
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = -1 / -3
Query: 808 LAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCV 629
+ +A+P I+ DLP + P V++V G+MF++IP A + ++ +LH W+DE CV
Sbjct: 641 IVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCV 462
Query: 628 KILANCRKAIPSR 590
+IL NC+KAIP +
Sbjct: 461 EILRNCKKAIPEK 423
Score = 46.4 bits (95), Expect(2) = 4e-023
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1 / -3
Query: 502 VCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
V L GG++R +W+ L+++ GFS YK++K ++E YP
Sbjct: 335 VMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 201
>gb|DT489174.1|DT489174 WS02538.B21_H23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_H23 3', mRNA sequence
Length = 707
Score = 81.7 bits (172), Expect(2) = 4e-023
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = -1 / -3
Query: 808 LAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCV 629
+ +A+P I+ DLP + P V++V G+MF++IP A + ++ +LH W+DE CV
Sbjct: 639 IVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFMQRILHDWTDESCV 460
Query: 628 KILANCRKAIPSR 590
+IL NC+KAIP +
Sbjct: 459 EILRNCKKAIPEK 421
Score = 46.4 bits (95), Expect(2) = 4e-023
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1 / -3
Query: 502 VCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
V L GG++R +W+ L+++ GFS YK++K ++E YP
Sbjct: 333 VMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 199
>gb|CV234439.1|CV234439 WS01214.B21_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_O21 3', mRNA sequence
Length = 702
Score = 81.7 bits (172), Expect(2) = 4e-023
Identities = 30/73 (41%), Positives = 48/73 (65%)
Frame = -1 / -3
Query: 808 LAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCV 629
+ +A+P I+ DLP + P V++V G+MF++IP A + ++ +LH W+DE CV
Sbjct: 634 IVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFMQRILHDWTDESCV 455
Query: 628 KILANCRKAIPSR 590
+IL NC+KAIP +
Sbjct: 454 EILRNCKKAIPEK 416
Score = 46.4 bits (95), Expect(2) = 4e-023
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1 / -3
Query: 502 VCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
V L GG++R +W+ L+++ GFS YK++K ++E YP
Sbjct: 328 VMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 194
>gb|CA933451.1|CA933451 MTU5CS.P8.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 614
Score = 75.3 bits (158), Expect(2) = 1e-022
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = -1 / -3
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIPSR 590
+ YV GDMF+ +P A+ +LLK +LH WSDEDCVKIL C++AI S+
Sbjct: 552 LKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKILKRCKQAITSK 415
Score = 51.5 bits (106), Expect(2) = 1e-022
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = -1 / -3
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQLL D+ MM+ G +R+ +W L AGF +YK+ R ++E+YP*
Sbjct: 339 ETQLLFDLEMMVAASGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>gb|CA932285.1|CA932285 MTU5CS.P11.A06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 560
Score = 75.3 bits (158), Expect(2) = 1e-022
Identities = 27/46 (58%), Positives = 36/46 (78%)
Frame = -1 / -3
Query: 727 VNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIPSR 590
+ YV GDMF+ +P A+ +LLK +LH WSDEDCVKIL C++AI S+
Sbjct: 552 LKYVAGDMFQGVPPAEAILLKWMLHDWSDEDCVKILKRCKQAITSK 415
Score = 51.5 bits (106), Expect(2) = 1e-022
Identities = 21/53 (39%), Positives = 32/53 (60%)
Frame = -1 / -3
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQLL D+ MM+ G +R+ +W L AGF +YK+ R ++E+YP*
Sbjct: 339 ETQLLFDLEMMVAASGMERNEEEWAKLFFDAGFLNYKIHPVLDTRALIELYP* 181
>gb|CV240212.1|CV240212 WS0234.B21_M02 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M02
3', mRNA sequence
Length = 673
Score = 79.9 bits (168), Expect(2) = 1e-022
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = -1 / -2
Query: 808 LAKAFPLIKITVLDLPQEIRKIPADGVVNYVGGDMFKSIPRAQMVLLKMVLHHWSDEDCV 629
+ +A+P I+ DLP + P V++V G+MF++IP A + ++ +LH W+DE C
Sbjct: 603 IVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPNADAIFIQRILHDWTDESCA 424
Query: 628 KILANCRKAIPSR 590
+IL NC+KAIP +
Sbjct: 423 EILRNCKKAIPEK 385
Score = 46.4 bits (95), Expect(2) = 1e-022
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -1 / -3
Query: 502 VCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP 368
V L GG++R +W+ L+++ GFS YK++K ++E YP
Sbjct: 296 VMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 162
>emb|AJ698925.1| Populus deltoides x Populus maximowiczii partial mRNA for putative
O-methyltransferase
Length = 453
Score = 69.8 bits (146), Expect(2) = 1e-021
Identities = 25/40 (62%), Positives = 33/40 (82%)
Frame = -1 / +1
Query: 712 GDMFKSIPRAQMVLLKMVLHHWSDEDCVKILANCRKAIPS 593
GDMF+++P A+ +LLK +LH WSDEDCVKIL C++AI S
Sbjct: 4 GDMFQAVPPAEAILLKCILHDWSDEDCVKILKRCKQAIMS 123
Score = 53.3 bits (110), Expect(2) = 1e-021
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = -1 / +1
Query: 523 QTQLLMDVCMMLMKGGRQRDVNDWRDLIQKAGFSDYKLLKKFGARGVLEIYP* 365
+TQL+ D+ MM++ G +R+ +W L +GF +YK+ G R V+E+YP*
Sbjct: 202 ETQLIFDLAMMVVVSGVERNEKEWAKLFFDSGFLNYKIHPVPGTRAVIELYP* 360
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 441,859,164
Number of Sequences: 369679
Number of extensions: 6235222
Number of successful extensions: 43312
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11124723820
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)