TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750912.2.1
(1095 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus... 163 4e-077
gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichoca... 141 7e-068
gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus... 174 2e-060
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 197 3e-057
gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA... 118 5e-055
gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library ... 144 2e-050
gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library ... 95 1e-047
gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus... 152 3e-045
gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Popul... 180 1e-044
gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Librar... 163 8e-043
gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremonti... 124 2e-040
gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated wit... 103 6e-040
gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus ... 163 2e-039
gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus ... 163 2e-039
gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZA... 153 3e-036
gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library... 140 1e-032
gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA libr... 137 9e-032
gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cD... 137 1e-031
gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA libr... 109 5e-030
gb|DN502270.1|DN502270 V063F09.5pR Populus male catkins cDN... 77 4e-027
gb|CK090590.1|CK090590 F014P57.3pR Populus flower cDNA libr... 122 4e-027
gb|CK091682.1|CK091682 F118P18.3pR Populus flower cDNA libr... 120 1e-026
gb|DT475076.1|DT475076 WS0125.BR_O23 PT-GT-FL-A-3 Populus t... 53 2e-024
>gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_H09 3', mRNA sequence
Length = 716
Score = 163 bits (350), Expect(2) = 4e-077
Identities = 66/95 (69%), Positives = 75/95 (78%)
Frame = +1 / +3
Query: 22 RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLXXXXX 201
RF+HIFRGQPRRHLL +GWS FV+SKRLVAGD+F+FLRGENGELRVGVRR RQ
Sbjct: 3 RFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVARQQSSMPS 182
Query: 202 XXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTS 306
MHLGVLATA HA++T ++F VYYKPRTS
Sbjct: 183 SVISSQSMHLGVLATASHAVSTLTLFVVYYKPRTS 287
Score = 146 bits (314), Expect(2) = 4e-077
Identities = 52/83 (62%), Positives = 71/83 (85%)
Frame = +1 / +3
Query: 310 SEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYL 489
S+FII ++Y+E+V N +++GMRF+MRFEGE++PE+RF+GTIVG E+ P W DS WR L
Sbjct: 285 SQFIISLNKYLEAVNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWNDSKWRSL 464
Query: 490 KVRWDEPSTIPRPDKVSPWKIEP 558
KV+WDEP++I RPD+VSPW+IEP
Sbjct: 465 KVQWDEPASISRPDRVSPWEIEP 533
Score = 117 bits (250), Expect(2) = 1e-036
Identities = 58/95 (61%), Positives = 67/95 (70%)
Frame = -2 / -2
Query: 305 LVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRK 126
LVLGL**T V A AVARTPRCML L+IT++G L RLTPTR+SPFSPLRK
Sbjct: 286 LVLGL**TTKRVRVETAWDAVARTPRCML*LEITDDGMLLCWRATRLTPTRNSPFSPLRK 107
Query: 125 MKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNR 21
SPAT+LLE+T LQP+ +CLLG P K+ NR
Sbjct: 106 TNESPATNLLEVTNVLQPVVSKCLLG*PLKICLNR 2
Score = 70.6 bits (148), Expect(2) = 3e-022
Identities = 33/95 (34%), Positives = 58/95 (61%)
Frame = -1 / -1
Query: 306 ARPRLVVDSEHGLCVNRVPCSRKNPEMHALARYNRRRYIRQLPHSAPNTNSKFTVFSSEE 127
A P L+++ + N + C KN ++HAL +R R+ L + P++N++FT+ SEE
Sbjct: 287 ACPWLIINHKES*G*NSMGCCCKNSKVHALTGNHR*RHAALLAGNTPHSNTQFTILPSEE 108
Query: 126 NEGVSSNKPFGTDKNTPTTLKEMPPGLPAEDVAES 22
++ + SN G+DK TPT + +PP L +E++ +S
Sbjct: 107 DKRIPSN*SLGSDKCTPTCGE*VPPWLTSENMLKS 3
Score = 56.9 bits (118), Expect(2) = 1e-036
Identities = 33/80 (41%), Positives = 41/80 (51%)
Frame = -1 / -1
Query: 552 YLPGRDLIWPRDSRRLIPAHLQVSPTGIRP*WVKIFTANYCTSKPLLGGLFPFKPHPESH 373
YLP + I + RLIP + Q P I P KIF N C KP L + FKPH ESH
Sbjct: 527 YLPW*NPIRS*NRSRLIPLNFQ*PPFRIIPMRRKIFNPNNCARKPSLRRILAFKPHLESH 348
Query: 372 PNRIIVFY*LHILIIWNDKL 313
NR ++ L I + D+L
Sbjct: 347 ANRKLIVNSL*IFVQAYDEL 288
Score = 55.1 bits (114), Expect(2) = 3e-022
Identities = 29/50 (58%), Positives = 30/50 (60%)
Frame = -2 / -2
Query: 557 GSIFQGETLSGRGIVEGSSQRTFKYLQLESGHSGSRFSQPTIVPVNLCSG 408
GSI GETLSG I GSS TF LES G + S PTIVP NL SG
Sbjct: 532 GSISHGETLSGLEIEAGSSH*TFNDRHLESFQ*GEKSSTPTIVPENLLSG 383
>gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_E05 5', mRNA sequence
Length = 779
Score = 141 bits (302), Expect(3) = 7e-068
Identities = 54/63 (85%), Positives = 61/63 (96%)
Frame = +1 / +3
Query: 271 SMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCEN 450
++FTVYYKPRTSP+EFI+P+DQYMESVKNNYSIGMRF+MRFEGEEAPEQRFTGTIVG E+
Sbjct: 6 TLFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIED 185
Query: 451 LDP 459
DP
Sbjct: 186 ADP 194
Score = 78.4 bits (165), Expect(3) = 7e-068
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +1 / +3
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPASSPP 573
W +S WR LKVRWDE ST+PRP++VSPWKIEPA +PP
Sbjct: 201 WKNSKWRCLKVRWDETSTMPRPERVSPWKIEPALAPP 311
Score = 78.0 bits (164), Expect(3) = 7e-068
Identities = 35/86 (40%), Positives = 49/86 (56%)
Frame = +1 / +3
Query: 568 PPVNPLPLSRGKRPRQNAPPPSPESSVLTKEGATKIDTDSAQTPHQNSVLQSQEQMSFRN 747
P +NPLPL R KRPR N P SP+ SVLT++G+ K+ D + VLQ QE + R
Sbjct: 309 PALNPLPLPRPKRPRANMMPSSPDDSVLTRDGSFKVTADPPSASGFSRVLQGQEFSTLRG 488
Query: 748 NLTESTDSDSTVQKQMMWSPSPNGKV 825
ES +S++ Q M S + + K+
Sbjct: 489 TFAESNESNAAEQSVMWPSSADDEKI 566
Score = 77.1 bits (162), Expect(3) = 4e-030
Identities = 39/61 (63%), Positives = 42/61 (68%)
Frame = -2 / -2
Query: 458 GSRFSQPTIVPVNLCSGAXXXXXXXXXXXXIE*LFFTDSIY*SYGMINSEGLVLGL**TV 279
GS S PTIVPVNLCSGA +E*LF TDS+Y*S G +NS GLVLGL**TV
Sbjct: 193 GSASSIPTIVPVNLCSGASSPSNLILNLIPME*LFLTDSMY*SKGTMNSAGLVLGL**TV 14
Query: 278 N 276
N
Sbjct: 13 N 11
Score = 54.6 bits (113), Expect(3) = 4e-030
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = -2 / -2
Query: 572 GGDEAGSIFQGETLSGRGIVEGSSQRTFKYLQLESGH 462
GG AGSIF GETLSGRG+VE SS T ++L LE H
Sbjct: 310 GGARAGSIFHGETLSGRGMVEVSSHLTLRHLHLEFFH 200
Score = 38.2 bits (77), Expect(3) = 4e-030
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = -2 / -2
Query: 683 SVSILVAPSFVRTDDSGEGGGAFCLGLFPLERGRGLTGG 567
S L PS VRT+ SG+ G F GL L GRG + G
Sbjct: 424 SAVTLNEPSLVRTESSGDEGIMFARGLLGLGNGRGFSAG 308
>gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F07 3', mRNA sequence
Length = 434
Score = 174 bits (376), Expect(2) = 2e-060
Identities = 67/79 (84%), Positives = 76/79 (96%)
Frame = +1 / -2
Query: 223 MHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGE 402
MHLGVLATAWHA++T ++FTVYYKPRTSP+EFI+P+DQYMESVKNNYSIGMRF+MRFEGE
Sbjct: 388 MHLGVLATAWHAVSTGTLFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGE 209
Query: 403 EAPEQRFTGTIVGCENLDP 459
EAPEQRFTGTIVG E+ DP
Sbjct: 208 EAPEQRFTGTIVGIEDADP 152
Score = 129 bits (276), Expect(2) = 1e-039
Identities = 61/94 (64%), Positives = 67/94 (71%)
Frame = -2 / +3
Query: 458 GSRFSQPTIVPVNLCSGAXXXXXXXXXXXXIE*LFFTDSIY*SYGMINSEGLVLGL**TV 279
GS S PTIVPVNLCSGA +E*LF TDS+Y*S G +NS GLVLGL**TV
Sbjct: 153 GSASSIPTIVPVNLCSGASSPSNLILNLIPME*LFLTDSMY*SKGTMNSAGLVLGL**TV 332
Query: 278 NMDFVLIACHAVARTPRCMLWLDITEEGTLDNCL 177
N V ACHAVA TPRCMLWLD+T++GTL CL
Sbjct: 333 NRVPVETACHAVASTPRCMLWLDMTDDGTLPCCL 434
Score = 78.4 bits (165), Expect(2) = 2e-060
Identities = 27/37 (72%), Positives = 32/37 (86%)
Frame = +1 / -2
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPASSPP 573
W +S WR LKVRWDE ST+PRP++VSPWKIEPA +PP
Sbjct: 145 WKNSKWRCLKVRWDETSTMPRPERVSPWKIEPALAPP 35
Score = 54.6 bits (113), Expect(2) = 1e-039
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = -2 / +3
Query: 572 GGDEAGSIFQGETLSGRGIVEGSSQRTFKYLQLESGH 462
GG AGSIF GETLSGRG+VE SS T ++L LE H
Sbjct: 36 GGARAGSIFHGETLSGRGMVEVSSHLTLRHLHLEFFH 146
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 197 bits (426), Expect(2) = 3e-057
Identities = 82/116 (70%), Positives = 93/116 (80%)
Frame = +1 / +2
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGENGELRVGVRR MR
Sbjct: 170 DLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMR 349
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMES 348
Q MHLGVLATA HAI T ++F+V+YKPRTS SEFI+ ++Y+E+
Sbjct: 350 QQTNMPSSVISSQSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVNLNKYIEA 517
Score = 152 bits (326), Expect = 4e-036
Identities = 73/114 (64%), Positives = 82/114 (71%)
Frame = -2 / -2
Query: 344 SIY*SYGMINSEGLVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARL 165
SIY +NS+ LVLGL* T V +A AVARTPRCMLWLDITE+G CL++ L
Sbjct: 513 SIYLLRFTMNSDLLVLGL*KTEKRVPVAMA*EAVARTPRCMLWLDITEDGIFVCCLMSLL 334
Query: 164 TPTRSSPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
TPTRSSPFSPLRKM ASPAT+ ELTKTL P+ R LG PRKM R HS+PCR
Sbjct: 333 TPTRSSPFSPLRKMNASPATNFFELTKTLHPVVSR*RLG*PRKMCRKCHSLPCR 172
Score = 45.5 bits (93), Expect(2) = 3e-057
Identities = 16/21 (76%), Positives = 20/21 (95%)
Frame = +1 / +3
Query: 364 SIGMRFRMRFEGEEAPEQRFT 426
S+GMRF+MRFEGEE PE+RF+
Sbjct: 534 SVGMRFKMRFEGEEVPERRFS 596
>gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q019A06 5', mRNA sequence
Length = 651
Score = 118 bits (253), Expect(4) = 5e-055
Identities = 44/58 (75%), Positives = 53/58 (91%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA 174
DLHG EW+FRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRGE+GELR+GVRRA
Sbjct: 6 DLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRA 179
Score = 95.4 bits (202), Expect(4) = 5e-055
Identities = 37/74 (50%), Positives = 54/74 (72%)
Frame = +1 / +3
Query: 238 LATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQ 417
LA +AI+ +S F +YY PR S SEFIIP++++++S+ ++S GMR +MRFE E+A E+
Sbjct: 243 LADVANAISMRSAFRIYYNPRASSSEFIIPFNKFLKSLDQSFSSGMRVKMRFETEDAAER 422
Query: 418 RFTGTIVGCENLDP 459
R+TG I G LDP
Sbjct: 423 RYTGLITGISELDP 464
Score = 31.3 bits (62), Expect(4) = 5e-055
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 463 WPDSSWRYLKVRWDE 507
WP S W+ L VRWD+
Sbjct: 471 WPGSKWKCLLVRWDD 515
Score = 26.7 bits (52), Expect(4) = 5e-055
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1 / +3
Query: 523 RPDKVSPWKIEPASS 567
R +VSPW++EP+ S
Sbjct: 528 RHSRVSPWEVEPSGS 572
>gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 503
Score = 144 bits (310), Expect(2) = 2e-050
Identities = 51/87 (58%), Positives = 73/87 (83%)
Frame = +1 / +1
Query: 310 SEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYL 489
+++II ++Y+E+VKN +S+GMRF+MRFEGE++PE+RFTGTIVG ++ P W S WR L
Sbjct: 172 NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISPEWSGSIWRSL 351
Query: 490 KVRWDEPSTIPRPDKVSPWKIEPASSP 570
K++WDEP+TI RP++VSPW IEP ++P
Sbjct: 352 KIQWDEPATIQRPERVSPWDIEPFAAP 432
Score = 75.2 bits (158), Expect(2) = 2e-050
Identities = 32/58 (55%), Positives = 37/58 (63%)
Frame = +1 / +1
Query: 133 RGENGELRVGVRRAMRQLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTS 306
RG N ELRVGVRR RQ MHLGVLATA H + T+++F VYYKPRT+
Sbjct: 1 RGHNRELRVGVRRLARQQSSIPSSVISSQSMHLGVLATASHTVLTQTLFVVYYKPRTN 174
Score = 65.6 bits (137), Expect(2) = 7e-022
Identities = 31/81 (38%), Positives = 43/81 (53%)
Frame = -1 / -3
Query: 555 LYLPGRDLIWPRDSRRLIPAHLQVSPTGIRP*WVKIFTANYCTSKPLLGGLFPFKPHPES 376
LY+P R+ +WP +S IP +LQ P RP W I +NYC+ +P L + K H E+
Sbjct: 417 LYVPWRNSLWPLNSCWFIPLNLQ*PPYRARPLWRNISNSNYCSCEPSLRRILSLKSHLEA 238
Query: 375 HPNRIIVFY*LHILIIWNDKL 313
H R + L I + ND L
Sbjct: 237 HTYRKSILNSLQIFVQPNDIL 175
Score = 58.8 bits (122), Expect(2) = 7e-022
Identities = 30/56 (53%), Positives = 33/56 (58%)
Frame = -2 / -1
Query: 302 VLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSP 135
VLGL* T V AVA TP+CMLWLDIT++G C R TPTRSS P
Sbjct: 170 VLGL*YTTKRVCVKTV*EAVASTPKCMLWLDITDDGMELCCRARRRTPTRSSLLWP 3
>gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 684
Score = 95.4 bits (202), Expect(4) = 1e-047
Identities = 37/74 (50%), Positives = 54/74 (72%)
Frame = +1 / +3
Query: 238 LATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQ 417
LA +AI+ +S F +YY PR S SEFIIP++++++S+ ++S GMR +MRFE E+A E+
Sbjct: 219 LADVANAISMRSAFRIYYNPRASSSEFIIPFNKFLKSLDQSFSSGMRVKMRFETEDAAER 398
Query: 418 RFTGTIVGCENLDP 459
R+TG I G LDP
Sbjct: 399 RYTGLITGISELDP 440
Score = 94.9 bits (201), Expect(4) = 1e-047
Identities = 36/51 (70%), Positives = 46/51 (90%)
Frame = +1 / +3
Query: 22 RFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA 174
+FRHI+RGQPRRHLL +GWS V++K+LV+GDA +FLRGE+GELR+GVR A
Sbjct: 3 KFRHIYRGQPRRHLLTTGWSASVNNKKLVSGDAVLFLRGEDGELRLGVRTA 155
Score = 31.3 bits (62), Expect(4) = 1e-047
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 463 WPDSSWRYLKVRWDE 507
WP S W+ L VRWD+
Sbjct: 447 WPGSKWKCLLVRWDD 491
Score = 25.3 bits (49), Expect(4) = 1e-047
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1 / +3
Query: 532 KVSPWKIEPASS 567
+VSPW++EP+ S
Sbjct: 513 RVSPWEVEPSGS 548
>gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_P18 3', mRNA sequence
Length = 302
Score = 152 bits (326), Expect(2) = 3e-045
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = +1 / -1
Query: 241 ATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQR 420
ATAW +T ++FTVYYKPRTSP+EFI+P+DQYMESVKNNYSIGMRF+MRFEGEEAPEQR
Sbjct: 302 ATAWQKNSTGTLFTVYYKPRTSPAEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQR 123
Query: 421 FTGTIVGCENLDP 459
FTGTIVG E+ DP
Sbjct: 122 FTGTIVGIEDADP 84
Score = 84.4 bits (178), Expect(2) = 8e-021
Identities = 44/72 (61%), Positives = 47/72 (65%)
Frame = -2 / +1
Query: 458 GSRFSQPTIVPVNLCSGAXXXXXXXXXXXXIE*LFFTDSIY*SYGMINSEGLVLGL**TV 279
GS S PTIVPVNLCSGA +E*LF TDS+Y*S G +NS GLVLGL**TV
Sbjct: 85 GSASSIPTIVPVNLCSGASSPSNLILNLIPME*LFLTDSMY*SKGTMNSAGLVLGL**TV 264
Query: 278 NMDFVLIACHAV 243
N V CHAV
Sbjct: 265 NRVPVEFFCHAV 300
Score = 51.0 bits (105), Expect(2) = 3e-045
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1 / -1
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKV 537
W +S WR LKVRWDE ST+PRP++V
Sbjct: 77 WKNSKWRCLKVRWDETSTMPRPERV 3
Score = 36.3 bits (73), Expect(2) = 8e-021
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = -2 / +1
Query: 539 ETLSGRGIVEGSSQRTFKYLQLESGH 462
ETLSGRG+VE SS T ++L LE H
Sbjct: 1 ETLSGRGMVEVSSHLTLRHLHLEFFH 78
>gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_I14 3', mRNA sequence
Length = 898
Score = 180 bits (388), Expect = 1e-044
Identities = 75/101 (74%), Positives = 81/101 (80%)
Frame = +1 / +1
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGENGELRVGVRR MR
Sbjct: 595 DLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMR 774
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRT 303
Q MHLGVLATA HAI T ++F+V+YKPRT
Sbjct: 775 QQTNMPSSVISSQSMHLGVLATASHAIVTGTLFSVFYKPRT 897
Score = 144 bits (310), Expect = 7e-034
Identities = 67/100 (67%), Positives = 74/100 (74%)
Frame = -2 / -3
Query: 302 VLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRKM 123
VLGL* T V +A AVARTPRCMLWLDITE+G CL++ LTPTRSSPFSPLRKM
Sbjct: 896 VLGL*KTEKRVPVTMA*EAVARTPRCMLWLDITEDGIFVCCLMSLLTPTRSSPFSPLRKM 717
Query: 122 KASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
ASPAT+ ELTKTL P+ R LG PRKM R HS+PCR
Sbjct: 716 NASPATNFFELTKTLHPVVSR*RLG*PRKMCRKCHSLPCR 597
>gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 582
Score = 163 bits (350), Expect(2) = 8e-043
Identities = 64/117 (54%), Positives = 83/117 (70%)
Frame = +1 / -1
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R
Sbjct: 429 DLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANR 250
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 351
MH+G+LA A HA T S FT++Y PR SPSEF+IP +Y+++V
Sbjct: 249 PQTFMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAV 79
Score = 107 bits (229), Expect = 1e-022
Identities = 59/116 (50%), Positives = 68/116 (58%)
Frame = -2 / +2
Query: 359 LFFTDSIY*SYGMINSEGLVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNC 180
+++T IY + GM NSEGL LGL* V V A A AR P CML LD T+EG
Sbjct: 71 VWYTALIYLTRGMTNSEGLALGL*NIVKRLLVAAA*AAAARRPICMLSLDKTDEGMKV*G 250
Query: 179 LIARLTPTRSSPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSM 12
AR P + FS K SPATSL LTKTL P+ RRCLLGCPR + N HS+
Sbjct: 251 RFARRIPKSNWFFSFQMKRTESPATSLFALTKTLHPVVRRCLLGCPRNICLNFHSL 418
Score = 31.8 bits (63), Expect(2) = 8e-043
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 364 SIGMRFRMRFEGEEAPEQRF 423
S+GMRFRM FE EE+ +R+
Sbjct: 63 SVGMRFRMLFETEESSVRRY 4
>gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 718
Score = 124 bits (266), Expect(3) = 2e-040
Identities = 52/81 (64%), Positives = 60/81 (74%)
Frame = +1 / +1
Query: 64 LQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLXXXXXXXXXXXXMHLGVLA 243
L +GWS FV+SKRLVAGD+F+FLRGENGELRVGVRR Q MHLGVLA
Sbjct: 421 LTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVACQQSSMPSSVISSQSMHLGVLA 600
Query: 244 TAWHAINTKSMFTVYYKPRTS 306
TA HA++T ++F VYYKPRTS
Sbjct: 601 TASHAVSTLTLFVVYYKPRTS 663
Score = 94.4 bits (200), Expect(2) = 4e-023
Identities = 47/79 (59%), Positives = 55/79 (69%)
Frame = -2 / -3
Query: 305 LVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRK 126
LVLGL* T V A AVARTPRC+L L+IT++G L RLTPTR+SPFSPLRK
Sbjct: 662 LVLGL*YTTKRVRVETA*DAVARTPRCIL*LEITDDGMLLCWQATRLTPTRNSPFSPLRK 483
Query: 125 MKASPATSLLELTKTLQPL 69
SPAT+LLE+T L P+
Sbjct: 482 TNESPATNLLEVTNVLHPV 426
Score = 55.5 bits (115), Expect(3) = 2e-040
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHL 63
DLHG EWRF+HIFRGQPRRHL
Sbjct: 357 DLHGYEWRFKHIFRGQPRRHL 419
Score = 34.0 bits (68), Expect(2) = 4e-023
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2 / -1
Query: 62 RCLLGCPRKMWRNRHSMPCR 3
+CLLG P K+ NRHS PCR
Sbjct: 418 KCLLG*PLKICLNRHS*PCR 359
Score = 24.9 bits (48), Expect(3) = 2e-040
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 310 SEFIIPYDQYMESVKNNY 363
S+FII ++Y+E+V N +
Sbjct: 661 SQFIISLNKYLEAVSNKF 714
>gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 756
Score = 103 bits (219), Expect(3) = 6e-040
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = +1 / +2
Query: 85 FVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQLXXXXXXXXXXXXMHLGVLATAWHAIN 264
FVS+KRL+AGD+ +F+ E +L +G++RA R MHLG+LA A HA
Sbjct: 11 FVSAKRLIAGDSVLFIWNEKNQLLLGIKRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAA 190
Query: 265 TKSMFTVYYKPRTSPSEFIIPYDQYMESV 351
T S FT++Y PR SPSEFIIP +Y+++V
Sbjct: 191 TNSRFTIFYNPRASPSEFIIPLAKYLKAV 277
Score = 54.6 bits (113), Expect(3) = 6e-040
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1 / +2
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPASSPPVNPLP 588
WP+S WR +KV WDE + R +VS W+IEP ++ P+ P P
Sbjct: 395 WPNSLWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSP 520
Score = 45.5 bits (93), Expect(3) = 6e-040
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +1 / +2
Query: 364 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLD 456
S+GMRFRM FE EE+ +R+ GTI G +LD
Sbjct: 293 SVGMRFRMLFETEESSVRRYMGTITGISDLD 385
>gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_D04 3', mRNA sequence
Length = 927
Score = 163 bits (351), Expect = 2e-039
Identities = 69/93 (74%), Positives = 73/93 (78%)
Frame = +1 / -3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGENGELRVGVRR MR
Sbjct: 469 DLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMR 290
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMF 279
Q MHLGVLATA HAI T ++F
Sbjct: 289 QQTNMPSSVISSQSMHLGVLATASHAIVTGTLF 191
Score = 140 bits (300), Expect = 2e-032
Identities = 61/88 (69%), Positives = 68/88 (77%)
Frame = -2 / +3
Query: 266 VLIACHAVARTPRCMLWLDITEEGTLDNCLIARLTPTRSSPFSPLRKMKASPATSLLELT 87
V +A AVARTPRCMLWLDITE+G CL++ LTPTRSSPFSPLRKM ASPAT+ ELT
Sbjct: 204 VTMA*EAVARTPRCMLWLDITEDGIFVCCLMSLLTPTRSSPFSPLRKMNASPATNFFELT 383
Query: 86 KTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
KTL P+ R LG PRKM R HS+PCR
Sbjct: 384 KTLHPVVSR*RLG*PRKMCRKCHSLPCR 467
>gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_B04 5', mRNA sequence
Length = 914
Score = 163 bits (350), Expect = 2e-039
Identities = 64/117 (54%), Positives = 83/117 (70%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R
Sbjct: 537 DLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANR 716
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 351
MH+G+LA A HA T S FT++Y PR SPSEF+IP +Y+++V
Sbjct: 717 PQTFMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAV 887
Score = 107 bits (229), Expect = 1e-022
Identities = 59/116 (50%), Positives = 68/116 (58%)
Frame = -2 / -2
Query: 359 LFFTDSIY*SYGMINSEGLVLGL**TVNMDFVLIACHAVARTPRCMLWLDITEEGTLDNC 180
+++T IY + GM NSEGL LGL* V V A A AR P CML LD T+EG
Sbjct: 895 VWYTALIYLTRGMTNSEGLALGL*NIVKRLLVAAA*AAAARRPICMLSLDKTDEGMKV*G 716
Query: 179 LIARLTPTRSSPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSM 12
AR P + FS K SPATSL LTKTL P+ RRCLLGCPR + N HS+
Sbjct: 715 RFARRIPKSNWFFSFQMKRTESPATSLFALTKTLHPVVRRCLLGCPRNICLNFHSL 548
>gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 520
Score = 153 bits (328), Expect = 3e-036
Identities = 60/117 (51%), Positives = 77/117 (65%)
Frame = +1 / +2
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E L VGVR A R
Sbjct: 152 DLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRNEKSHLMVGVRHANR 331
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 351
Q MH+GVLA A HA +S FT++Y PR PS+F+IP ++ ++V
Sbjct: 332 QQTTLPSSVLSADSMHIGVLAAAAHAAGNRSPFTIFYNPRACPSDFVIPLIKFRKTV 502
>gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 499
Score = 140 bits (301), Expect = 1e-032
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA 174
DLHG EWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA
Sbjct: 324 DLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA 497
Score = 107 bits (228), Expect = 1e-022
Identities = 45/58 (77%), Positives = 48/58 (82%)
Frame = -2 / -1
Query: 176 IARLTPTRSSPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMWRNRHSMPCR 3
IARLTPTRSSPFSPLR + ASPATSLLELT TL PL* +CL G PRKM R RHS PC+
Sbjct: 499 IARLTPTRSSPFSPLRNINASPATSLLELTNTLHPL*SKCLRGWPRKMCRKRHSFPCK 326
>gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P75 3', mRNA sequence
Length = 806
Score = 137 bits (295), Expect = 9e-032
Identities = 55/100 (55%), Positives = 67/100 (67%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E +L VGVRRA R
Sbjct: 501 DLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANR 680
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKSMFTVYYKPR 300
Q MH+GVLA A HA +S FT++Y PR
Sbjct: 681 QQTTLPSSVLSADSMHIGVLAAAAHATANRSPFTIFYNPR 800
>gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 398
Score = 137 bits (294), Expect = 1e-031
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLHG EW FRHIFRGQPRRHLL +GWSVFVSSK+LVAGDAFIFLRGENGELRVGVRR MR
Sbjct: 189 DLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMR 368
Query: 181 Q 183
Q
Sbjct: 369 Q 371
Score = 104 bits (223), Expect = 7e-022
Identities = 46/69 (66%), Positives = 52/69 (75%)
Frame = -2 / -2
Query: 209 ITEEGTLDNCLIARLTPTRSSPFSPLRKMKASPATSLLELTKTLQPL*RRCLLGCPRKMW 30
ITE+G CL++ LTPTRSSPFSPLRKM ASPAT+ ELTKTL P+ R LG PRKM
Sbjct: 397 ITEDGIFVCCLMSLLTPTRSSPFSPLRKMNASPATNFFELTKTLHPVVSR*RLG*PRKMC 218
Query: 29 RNRHSMPCR 3
R HS+PCR
Sbjct: 217 RKCHSLPCR 191
>gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P27 3', mRNA sequence
Length = 860
Score = 109 bits (233), Expect(2) = 5e-030
Identities = 43/78 (55%), Positives = 52/78 (66%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E +L VGVRRA R
Sbjct: 501 DLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANR 680
Query: 181 QLXXXXXXXXXXXXMHLG 234
Q MH+G
Sbjct: 681 QQTTLPSSVLSADSMHIG 734
Score = 42.3 bits (86), Expect(2) = 5e-030
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1 / +1
Query: 229 LGVLATAWHAINTKSMFTVYYKPRTSPSEFIIP 327
LGVLA A HA +S +Y PR PS+F+IP
Sbjct: 730 LGVLAAAAHATANRSHSPFFYNPRACPSDFVIP 828
>gb|DN502270.1|DN502270 V063F09.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V063F09 5', mRNA sequence
Length = 395
Score = 77.1 bits (162), Expect(5) = 4e-027
Identities = 28/45 (62%), Positives = 35/45 (77%)
Frame = +1 / +3
Query: 391 FEGEEAPEQRFTGTIVGCENLDPLWPDSSWRYLKVRWDEPSTIPR 525
FEGE++PE+RFTGTIVG ++ P W S WR LK++WDEP TI R
Sbjct: 228 FEGEDSPERRFTGTIVGVGDISPEWSGSIWRSLKIQWDEPPTIQR 362
Score = 43.2 bits (88), Expect(5) = 4e-027
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 232 GVLATAWHAINTKSMFTVYYKPRTS 306
GVLATA H + T+++F VYYKPRT+
Sbjct: 100 GVLATASHTVLTQTLFVVYYKPRTN 174
Score = 25.8 bits (50), Expect(5) = 4e-027
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 142 NGELRVGVRRAMRQ 183
N ELRVGVRR RQ
Sbjct: 35 NTELRVGVRRLARQ 76
Score = 24.0 bits (46), Expect(5) = 4e-027
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1 / +2
Query: 316 FIIPYDQYMESVKNNYSIGMRF 381
+II ++Y+E+VKN + G F
Sbjct: 179 YIIGLNKYLEAVKNGFI*GRGF 244
Score = 24.0 bits (46), Expect(5) = 4e-027
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1 / +3
Query: 112 GDAFIFLRG 138
GDAF+FLRG
Sbjct: 6 GDAFVFLRG 32
>gb|CK090590.1|CK090590 F014P57.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P57 3', mRNA sequence
Length = 817
Score = 122 bits (261), Expect = 4e-027
Identities = 50/91 (54%), Positives = 60/91 (65%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E +L VGVRRA R
Sbjct: 501 DLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANR 680
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHAINTKS 273
Q MH+GVLA A HA +S
Sbjct: 681 QQTTLPSSVLSADSMHMGVLAAAAHATANRS 773
>gb|CK091682.1|CK091682 F118P18.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F118P18 3', mRNA sequence
Length = 828
Score = 120 bits (258), Expect = 1e-026
Identities = 49/86 (56%), Positives = 58/86 (67%)
Frame = +1 / +3
Query: 1 DLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 180
DLH W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E +L VGVRRA R
Sbjct: 501 DLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANR 680
Query: 181 QLXXXXXXXXXXXXMHLGVLATAWHA 258
Q MH+GVLA A HA
Sbjct: 681 QQTTLPSSVLSADSMHIGVLAAAAHA 758
>gb|DT475076.1|DT475076 WS0125.BR_O23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_O23 5', mRNA sequence
Length = 578
Score = 52.8 bits (109), Expect(3) = 2e-024
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1 / +3
Query: 463 WPDSSWRYLKVRWDEPSTIPRPDKVSPWKIEPASSPPVNP 582
WP+S WR +KV WDE + R +VS W+IEP ++ P+ P
Sbjct: 216 WPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYP 335
Score = 49.1 bits (101), Expect(3) = 2e-024
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +1 / +3
Query: 364 SIGMRFRMRFEGEEAPEQRFTGTIVGCENLDPL 462
S+GMRFRM FE EE+ +R+ GTI G +LDP+
Sbjct: 114 SVGMRFRMLFETEESSVRRYMGTITGISDLDPV 212
Score = 48.7 bits (100), Expect(3) = 2e-024
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1 / +3
Query: 256 AINTKSMFTVYYKPRTSPSEFIIPYDQYMESV 351
A T S FTV+Y PR SPSEF+IP +Y+++V
Sbjct: 3 AAATNSCFTVFYNPRASPSEFVIPLSKYIKAV 98
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.317 0.131 0.410
Matrix: BLOSUM62
Number of Hits to DB: 510,649,264
Number of Sequences: 369679
Number of extensions: 7383688
Number of successful extensions: 45162
Number of sequences better than 1.0e-020: 24
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 15156828960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)