TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750753.2.1
(1126 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 307 7e-084
gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Popul... 307 1e-082
gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus ... 291 5e-078
gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremonti... 155 2e-073
gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus... 179 2e-071
gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus... 130 7e-067
gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cD... 247 9e-065
gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library... 245 3e-064
gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus ... 230 1e-060
gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA libr... 233 2e-060
gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Librar... 229 2e-060
gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZA... 225 4e-058
gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichoca... 162 8e-057
gb|CK091682.1|CK091682 F118P18.3pR Populus flower cDNA libr... 219 2e-056
gb|CK090590.1|CK090590 F014P57.3pR Populus flower cDNA libr... 219 3e-056
gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA libr... 207 4e-054
gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA... 133 4e-048
gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library ... 98 2e-044
gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library ... 106 6e-040
gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus... 91 4e-039
gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated wit... 96 2e-035
gb|CX173766.1|CX173766 B05_69-92_03.ab1 leaf inoculated wit... 103 2e-021
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 307 bits (665), Expect(2) = 7e-084
Identities = 124/149 (83%), Positives = 137/149 (91%)
Frame = +2 / +2
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDM++QPP QELV DLHG EW FRHIF
Sbjct: 29 VHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVTTDLHGNEWHFRHIF 208
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLL +GWSVFVS+K+L AGDAFIFLRG++GELRVGVRR MRQQ N+PSSVISS
Sbjct: 209 RGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQ 388
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SMHLGVLATA HA+ TGT+F+V+YKPRTS
Sbjct: 389 SMHLGVLATASHAIATGTLFSVFYKPRTS 475
Score = 158 bits (340), Expect(3) = 4e-046
Identities = 72/105 (68%), Positives = 75/105 (71%)
Frame = -2 / -2
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL* T VPV A AVARTPRCMLWLDITEDG F CCLM+ LTPTRSSP SPLRK
Sbjct: 474 LVLGL*KTEKRVPVAMA*EAVARTPRCMLWLDITEDGIFVCCLMSLLTPTRSSPFSPLRK 295
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
M ASPA LTKTL P+ R G*P M RK HS PCRS+ T
Sbjct: 294 MNASPATNFFELTKTLHPVVSR*RLG*PRKMCRKCHSLPCRSVVT 160
Score = 138 bits (295), Expect = 8e-032
Identities = 67/146 (45%), Positives = 89/146 (60%)
Frame = -1 / -1
Query: 496 TCPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*K 317
TC LV D K G S N M SKN MHA+A Y RW+ICLLPH P S+TKL + *+
Sbjct: 475 TCSWLVEDRKKGSSRNGMRSSSKNP*MHALARYNRRWHICLLPHEPPYSHTKLAIFSP*E 296
Query: 316 DEGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRK 137
DE I+ NK+TP +++ WLTS+ V+K P MQ+ + L L HIQ +
Sbjct: 295 DECITRN*LF*ANKDTPPCCEQVTPWLTSKNVSKMPLIAMQISCNQFLPRWLLRHIQRWQ 116
Query: 136 TLICMAPQHRESTMSAGIRGCQCLAE 59
T+ICM ++RE+TMSA +R +CLA+
Sbjct: 115 TIICMPSKNRETTMSACVRSSKCLAK 38
Score = 95.9 bits (203), Expect(3) = 1e-025
Identities = 44/100 (44%), Positives = 56/100 (56%)
Frame = +1 / +1
Query: 196 AWCGMALSPHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAA 375
AW +A S H RST + +EC C* + C C+HL K W ASC S+ HEA
Sbjct: 175 AWQ*VAFSTHFSRSTKASPAHNRVECLC*LKKVSCG*CIHLPKGRKWRASCGSKEAHEAT 354
Query: 376 SKCSIFSNIKPQHASWCSCYSMACC*HWDHVYCLLQA*DK 495
K +IF I P+HAS SCY +C W+ +CLLQA +K
Sbjct: 355 DKYAIFCYI*PKHASRGSCYCFSCHCDWNPFFCLLQAKNK 474
Score = 41.4 bits (84), Expect(3) = 1e-025
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1 / +1
Query: 34 TCKATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGY 153
T K +LQD *++HSWW L ++ CR*+S+ GY
Sbjct: 13 T*KMRGPFILQDTYCF*HKHSWWFLCSSKACR*LSATFGY 132
Score = 40.0 bits (81), Expect(3) = 4e-046
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / -3
Query: 155 SYPVAEDTHLHGAAAPRIHHECWYQRLSMSCRRSARVALQV 33
+YP D HLH R HHEC Q+ +SC+ + QV
Sbjct: 134 TYPKVADNHLHAFEEQRNHHECLCQKQ*VSCKMNGPRIFQV 12
Score = 25.4 bits (49), Expect(3) = 4e-046
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -3
Query: 594 LHLKPHFKSHPYR 556
L LK H K HPYR
Sbjct: 572 LTLKSHLKPHPYR 534
Score = 24.4 bits (47), Expect(2) = 7e-084
Identities = 8/10 (80%), Positives = 10/10 (100%)
Frame = +1 / +3
Query: 559 IGMRFKMRFK 588
+GMRFKMRF+
Sbjct: 537 VGMRFKMRFE 566
Score = 21.7 bits (41), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3 / +3
Query: 588 GEEAPEQRFT 617
GEE PE+RF+
Sbjct: 567 GEEVPERRFS 596
>gb|CV256321.1|CV256321 WS0243.B21_I14 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0243_I14 3', mRNA sequence
Length = 898
Score = 307 bits (664), Expect = 1e-082
Identities = 124/148 (83%), Positives = 137/148 (92%)
Frame = +2 / +1
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDM++QPP QELVA DLHG EW FRHIF
Sbjct: 454 VHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIF 633
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLL +GWSVFVS+K+L AGDAFIFLRG++GELRVGVRR MRQQ N+PSSVISS
Sbjct: 634 RGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQ 813
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRT 493
SMHLGVLATA HA+ TGT+F+V+YKPRT
Sbjct: 814 SMHLGVLATASHAIVTGTLFSVFYKPRT 897
Score = 158 bits (340), Expect(2) = 8e-044
Identities = 72/104 (69%), Positives = 75/104 (72%)
Frame = -2 / -3
Query: 492 VLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRKM 313
VLGL* T VPV A AVARTPRCMLWLDITEDG F CCLM+ LTPTRSSP SPLRKM
Sbjct: 896 VLGL*KTEKRVPVTMA*EAVARTPRCMLWLDITEDGIFVCCLMSLLTPTRSSPFSPLRKM 717
Query: 312 KASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
ASPA LTKTL P+ R G*P M RK HS PCRS+AT
Sbjct: 716 NASPATNFFELTKTLHPVVSR*RLG*PRKMCRKCHSLPCRSVAT 585
Score = 138 bits (297), Expect = 4e-032
Identities = 66/145 (45%), Positives = 89/145 (61%)
Frame = -1 / -2
Query: 493 CPRLVVDSKHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KD 314
C LV D K G S N M SKN MHA+A Y RW+ICLLPH P S+TKL + *+D
Sbjct: 897 CSWLVEDRKKGSSHNGMRSSSKNP*MHALARYNRRWHICLLPHEPPYSHTKLAIFSP*ED 718
Query: 313 EGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKT 134
E I+ NK+TP +++ WLTS+ V+K P MQ+ + L L H+Q R+T
Sbjct: 717 ECITRN*LF*ANKDTPPCCEQVTPWLTSKNVSKMPLIAMQISCNQFLPRWLLRHVQRRQT 538
Query: 133 LICMAPQHRESTMSAGIRGCQCLAE 59
+ICM ++RE+TMSA +R +CLA+
Sbjct: 537 IICMPSKNRETTMSACVRSSKCLAK 463
Score = 95.0 bits (201), Expect(2) = 1e-024
Identities = 43/97 (44%), Positives = 54/97 (55%)
Frame = +1 / +3
Query: 196 AWCGMALSPHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAA 375
AW +A S H RST + +EC C* + C C+HL K W ASC S+ HEA
Sbjct: 600 AWQ*VAFSTHFSRSTKASPAHNRVECLC*LKKVSCG*CIHLPKGRKWRASCGSKEAHEAT 779
Query: 376 SKCSIFSNIKPQHASWCSCYSMACC*HWDHVYCLLQA 486
K +IF I P+HAS SCY +C W+ +CLLQA
Sbjct: 780 DKYAIFCYI*PKHASRGSCYCFSCHCDWNPFFCLLQA 890
Score = 39.6 bits (80), Expect(2) = 8e-044
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -2 / -3
Query: 117 RSTENPP*VLVSEAVNVLQKECT 49
R TE PP*VLVSEAV+VLQ E T
Sbjct: 521 RRTEKPP*VLVSEAVSVLQNEWT 453
Score = 39.1 bits (79), Expect(2) = 1e-024
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1 / +3
Query: 58 LLQDIDSL*YQHSWWILGAAAPCR*VSSATGY 153
+LQD *++HSWW L ++ CR*+S++ G+
Sbjct: 462 ILQDTYCF*HKHSWWFLCSSKACR*LSASFGH 557
>gb|CV244991.1|CV244991 WS0256.B21_D04 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_D04 3', mRNA sequence
Length = 927
Score = 291 bits (630), Expect = 5e-078
Identities = 120/155 (77%), Positives = 135/155 (87%)
Frame = +2 / -3
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDM++QPP QELVA DLHG EW FRHIF
Sbjct: 610 VHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIF 431
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSH 409
RGQPRRHLL +GWSVFVS+K+L AGDAFIFLRG++GELRVGVRR MRQQ N+PSSVISS
Sbjct: 430 RGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVISSQ 251
Query: 410 SMHLGVLATAWHAVNTGTMFTVYYKPRTSLQLSLL 514
SMHLGVLATA HA+ TGT+F + + + L +L
Sbjct: 250 SMHLGVLATASHAIVTGTLFFCLLQAKVFVHLVVL 146
Score = 150 bits (323), Expect(2) = 2e-041
Identities = 66/94 (70%), Positives = 69/94 (73%)
Frame = -2 / +3
Query: 462 VPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRKMKASPAPRRLA 283
VPV A AVARTPRCMLWLDITEDG F CCLM+ LTPTRSSP SPLRKM ASPA
Sbjct: 198 VPVTMA*EAVARTPRCMLWLDITEDGIFVCCLMSLLTPTRSSPFSPLRKMNASPATNFFE 377
Query: 282 LTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSLAT 181
LTKTL P+ R G*P M RK HS PCRS+AT
Sbjct: 378 LTKTLHPVVSR*RLG*PRKMCRKCHSLPCRSVAT 479
Score = 131 bits (281), Expect = 7e-030
Identities = 62/137 (45%), Positives = 85/137 (62%)
Frame = -1 / +2
Query: 469 KHGPSVNSMPCCSKNTKMHAVA*YY*RWNICLLPHGTPDSYTKLPTITS*KDEGISSTKT 290
K G S N M SKN MHA+A Y RW+ICLLPH P S+TKL + *+DE I+
Sbjct: 191 KKGSSHNGMRSSSKNP*MHALARYNRRWHICLLPHEPPYSHTKLAIFSP*EDECITRN*L 370
Query: 289 LGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKTLICMAPQH 110
NK+TP +++ WLTS+ V+K P MQ+ + L L H+Q R+T+ICM ++
Sbjct: 371 F*ANKDTPPCCEQVTPWLTSKNVSKMPLIAMQISCNQFLPRWLLRHVQRRQTIICMPSKN 550
Query: 109 RESTMSAGIRGCQCLAE 59
RE+TMSA +R +CLA+
Sbjct: 551 RETTMSACVRSSKCLAK 601
Score = 83.1 bits (175), Expect(2) = 3e-021
Identities = 38/89 (42%), Positives = 48/89 (53%)
Frame = +1 / -2
Query: 196 AWCGMALSPHIQRSTTKASFAEWLECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAA 375
AW +A S H RST + +EC C* + C C+HL K W ASC S+ HEA
Sbjct: 464 AWQ*VAFSTHFSRSTKASPAHNRVECLC*LKKVSCG*CIHLPKGRKWRASCGSKEAHEAT 285
Query: 376 SKCSIFSNIKPQHASWCSCYSMACC*HWD 462
K +IF I P+HAS SCY +C W+
Sbjct: 284 DKYAIFCYI*PKHASRGSCYCFSCHCDWN 198
Score = 39.6 bits (80), Expect(2) = 2e-041
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = -2 / +3
Query: 117 RSTENPP*VLVSEAVNVLQKECT 49
R TE PP*VLVSEAV+VLQ E T
Sbjct: 543 RRTEKPP*VLVSEAVSVLQNEWT 611
Score = 39.1 bits (79), Expect(2) = 3e-021
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +1 / -2
Query: 58 LLQDIDSL*YQHSWWILGAAAPCR*VSSATGY 153
+LQD *++HSWW L ++ CR*+S++ G+
Sbjct: 602 ILQDTYCF*HKHSWWFLCSSKACR*LSASFGH 507
>gb|DV463887.1|DV463887 MTUNUL1.P20.F06 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 718
Score = 155 bits (334), Expect(2) = 2e-073
Identities = 60/68 (88%), Positives = 63/68 (92%)
Frame = +2 / +3
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCK LTASDTSTHGGFSVLR+HA ECLPPLDMT+ PTQELVAKDLHG EWRF+HIF
Sbjct: 216 VHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQPTPTQELVAKDLHGYEWRFKHIF 395
Query: 230 RGQPRRHL 253
RGQPRRHL
Sbjct: 396 RGQPRRHL 419
Score = 141 bits (302), Expect(2) = 2e-073
Identities = 59/81 (72%), Positives = 71/81 (87%)
Frame = +2 / +1
Query: 254 LQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLA 433
L +GWS FV++KRL AGD+F+FLRG++GELRVGVRR QQ+++PSSVISS SMHLGVLA
Sbjct: 421 LTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVACQQSSMPSSVISSQSMHLGVLA 600
Query: 434 TAWHAVNTGTMFTVYYKPRTS 496
TA HAV+T T+F VYYKPRTS
Sbjct: 601 TASHAVSTLTLFVVYYKPRTS 663
Score = 96.4 bits (204), Expect(2) = 3e-038
Identities = 46/79 (58%), Positives = 52/79 (65%)
Frame = -2 / -3
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL* T V V TA AVARTPRC+L L+IT+DG C RLTPTR+SP SPLRK
Sbjct: 662 LVLGL*YTTKRVRVETA*DAVARTPRCIL*LEITDDGMLLCWQATRLTPTRNSPFSPLRK 483
Query: 315 MKASPAPRRLALTKTLQPL 259
SPA L +T L P+
Sbjct: 482 TNESPATNLLEVTNVLHPV 426
Score = 83.1 bits (175), Expect(2) = 3e-038
Identities = 36/70 (51%), Positives = 47/70 (67%)
Frame = -1 / -3
Query: 259 LQKMPSWLTSEYVAKAPFHTMQVLGYKLLCWRLTGHIQWRKTLICMAPQHRESTMSAGIR 80
+ ++P WLTSE + K+PF TM +LG + L W GHIQWRK M ++R+STM A IR
Sbjct: 425 VSQVPPWLTSENMLKSPFITM*ILGNQFLSWGWLGHIQWRKAFSGMFTKNRKSTMGARIR 246
Query: 79 GCQCLAEGVH 50
G LAEGV+
Sbjct: 245 GS*HLAEGVN 216
Score = 74.4 bits (156), Expect(2) = 4e-022
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +1 / +2
Query: 40 KATRALLLQDIDSL*YQHSWWILGAAAPCR*VSSATGYDPSTSNTRACSQGPAWCGMALS 219
K +LLLQ ++ L*Y+H WWI ++ C *+ S+TGYDP+ N+ QG W MA+
Sbjct: 206 KTYSSLLLQGVNCL*YEHPWWIFCSS*TCH*MPSSTGYDPTNPNSGIGCQGSTWL*MAI* 385
Query: 220 PHIQRSTTKA 249
+ QRST +A
Sbjct: 386 AYFQRSTKEA 415
Score = 51.0 bits (105), Expect(2) = 4e-022
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1 / +3
Query: 265 LECFC*CQASWCWRCLHLSKR**WGASCRSQACHEAASKCSIFSNIKPQHASWCSCYSMA 444
+E C Q CW + +R WG +C +AC + +I + + ++A W SC S++
Sbjct: 432 VEYICYLQEISCWGFICFPQRGEWGIACWGEACCLPTEQHAIICDFQSEYAPWSSCNSVS 611
Query: 445 CC 450
CC
Sbjct: 612 CC 617
>gb|DT469334.1|DT469334 WS01917.C21_H09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_H09 3', mRNA sequence
Length = 716
Score = 179 bits (386), Expect(4) = 2e-071
Identities = 73/95 (76%), Positives = 86/95 (90%)
Frame = +2 / +3
Query: 212 RFRHIFRGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPS 391
RF+HIFRGQPRRHLL +GWS FV++KRL AGD+F+FLRG++GELRVGVRR RQQ+++PS
Sbjct: 3 RFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRVARQQSSMPS 182
Query: 392 SVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
SVISS SMHLGVLATA HAV+T T+F VYYKPRTS
Sbjct: 183 SVISSQSMHLGVLATASHAVSTLTLFVVYYKPRTS 287
Score = 118 bits (252), Expect(2) = 3e-029
Identities = 56/95 (58%), Positives = 63/95 (66%)
Frame = -2 / -2
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCLMARLTPTRSSPLSPLRK 316
LVLGL**T V V TA AVARTPRCML L+IT+DG C RLTPTR+SP SPLRK
Sbjct: 286 LVLGL**TTKRVRVETAWDAVARTPRCML*LEITDDGMLLCWRATRLTPTRNSPFSPLRK 107
Query: 315 MKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKR 211
SPA L +T LQP+ +CL G*PL + R
Sbjct: 106 TNESPATNLLEVTNVLQPVVSKCLLG*PLKICLNR 2
Score = 75.3 bits (158), Expect(4) = 2e-071
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = +3 / +3
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPPINPLPVHRPKR 803
W +SKWR LKV+WDE +SI RP+RVSPW+IEP V+ P N +PK+
Sbjct: 438 WNDSKWRSLKVQWDEPASISRPDRVSPWEIEPCVASVPANLSQPVQPKK 584
Score = 40.0 bits (81), Expect(4) = 2e-071
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +1 / +3
Query: 502 AEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
++F++ ++Y+E++ + +GMRFKMRF+
Sbjct: 285 SQFIISLNKYLEAVNNKFAVGMRFKMRFE 371
Score = 33.6 bits (67), Expect(2) = 3e-029
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = -1 / -2
Query: 736 GETLSGRGMEEASSHLTLR*RHLDS 662
GETLSG +E SSH T RHL+S
Sbjct: 517 GETLSGLEIEAGSSH*TFNDRHLES 443
Score = 32.7 bits (65), Expect(4) = 2e-071
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVD 641
GE++PE+RF+GTIVG D
Sbjct: 372 GEDSPERRFSGTIVGVED 425
>gb|DT488034.1|DT488034 WS02535.B21_F07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F07 3', mRNA sequence
Length = 434
Score = 130 bits (278), Expect(3) = 7e-067
Identities = 50/71 (70%), Positives = 57/71 (80%)
Frame = +3 / -2
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
GEEAPEQRFTGTIVG D D W SKWR LKVRWDE S++PRPERVSPW+IEPA++PP
Sbjct: 214 GEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERVSPWKIEPALAPP 35
Query: 768 PINPLPVHRPK 800
+NP + RPK
Sbjct: 34 ALNPHALPRPK 2
Score = 100 bits (213), Expect(3) = 7e-067
Identities = 40/43 (93%), Positives = 42/43 (97%)
Frame = +2 / -2
Query: 368 RQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
RQQ NVPSSVISSHSMHLGVLATAWHAV+TGT+FTVYYKPRTS
Sbjct: 433 RQQGNVPSSVISSHSMHLGVLATAWHAVSTGTLFTVYYKPRTS 305
Score = 89.5 bits (189), Expect(3) = 3e-039
Identities = 36/43 (83%), Positives = 38/43 (88%)
Frame = -2 / +3
Query: 495 LVLGL**TVNMVPVLTACHAVARTPRCMLWLDITEDGTFACCL 367
LVLGL**TVN VPV TACHAVA TPRCMLWLD+T+DGT CCL
Sbjct: 306 LVLGL**TVNRVPVETACHAVASTPRCMLWLDMTDDGTLPCCL 434
Score = 74.8 bits (157), Expect(3) = 3e-039
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = -1 / +3
Query: 736 GETLSGRGMEEASSHLTLR*RHLDSAHPA*SGSTFPTMVPVNLCSGA 596
GETLSGRGM E SSHLTLR HL+ H S S+ PT+VPVNLCSGA
Sbjct: 66 GETLSGRGMVEVSSHLTLRHLHLEFFHLPGSASSIPTIVPVNLCSGA 206
Score = 63.4 bits (132), Expect(3) = 7e-067
Identities = 24/31 (77%), Positives = 28/31 (90%)
Frame = +1 / -2
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SPAEF+VP D+YMES+K NY IGMRFKMRF+
Sbjct: 307 SPAEFIVPFDQYMESVKNNYSIGMRFKMRFE 215
Score = 36.8 bits (74), Expect(3) = 3e-039
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2 / +2
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNKL 505
K HFK HPY +I H+ I G+N+L
Sbjct: 218 KSHFKPHPYGIIILDRLHVLIKGDNEL 298
>gb|BU821803.1|BU821803 UB28CPB01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 398
Score = 247 bits (534), Expect = 9e-065
Identities = 99/117 (84%), Positives = 108/117 (92%)
Frame = +2 / +3
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHAD+CLPPLDM++QPP QELV DLHG EW FRHIF
Sbjct: 48 VHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVTTDLHGNEWHFRHIF 227
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVI 400
RGQPRRHLL +GWSVFVS+K+L AGDAFIFLRG++GELRVGVRR MRQQ N+PSSVI
Sbjct: 228 RGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQTNMPSSVI 398
Score = 109 bits (233), Expect(2) = 2e-029
Identities = 48/73 (65%), Positives = 51/73 (69%)
Frame = -2 / -2
Query: 399 ITEDGTFACCLMARLTPTRSSPLSPLRKMKASPAPRRLALTKTLQPLCKRCLRG*PLNMW 220
ITEDG F CCLM+ LTPTRSSP SPLRKM ASPA LTKTL P+ R G*P M
Sbjct: 397 ITEDGIFVCCLMSLLTPTRSSPFSPLRKMNASPATNFFELTKTLHPVVSR*RLG*PRKMC 218
Query: 219 RKRHSTPCRSLAT 181
RK HS PCRS+ T
Sbjct: 217 RKCHSLPCRSVVT 179
Score = 107 bits (229), Expect = 1e-022
Identities = 50/114 (43%), Positives = 71/114 (62%)
Frame = -1 / -1
Query: 400 YY*RWNICLLPHGTPDSYTKLPTITS*KDEGISSTKTLGTNKNTPATLQKMPSWLTSEYV 221
Y RW+ICLLPH P S+TKL + *+DE I+ NK+TP +++ WLTS+ V
Sbjct: 398 YNRRWHICLLPHEPPYSHTKLAIFSP*EDECITRN*LF*ANKDTPPCCEQVTPWLTSKNV 219
Query: 220 AKAPFHTMQVLGYKLLCWRLTGHIQWRKTLICMAPQHRESTMSAGIRGCQCLAE 59
+K P MQ+ + L L HIQ +T+ICM ++RE+TMSA +R +CLA+
Sbjct: 218 SKMPLIAMQISCNQFLPRWLLRHIQRWQTIICMPSKNRETTMSACVRSSKCLAK 57
Score = 40.0 bits (81), Expect(2) = 2e-029
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3 / -3
Query: 155 SYPVAEDTHLHGAAAPRIHHECWYQRLSMSCRRSARVALQV 33
+YP D HLH R HHEC Q+ +SC+ + QV
Sbjct: 153 TYPKVADNHLHAFEEQRNHHECLCQKQ*VSCKMNGPRIFQV 31
>gb|BI138460.1|BI138460 F106P90Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 499
Score = 245 bits (530), Expect = 3e-064
Identities = 99/105 (94%), Positives = 103/105 (98%)
Frame = +2 / +3
Query: 50 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIF 229
VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDM+RQPPTQELVAKDLHG EWRFRHIF
Sbjct: 183 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIF 362
Query: 230 RGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRA 364
RGQPRRHLLQSGWSVFVS+KRL AGDAFIFLRG++GELRVGVRRA
Sbjct: 363 RGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA 497
Score = 111 bits (237), Expect = 8e-024
Identities = 46/97 (47%), Positives = 67/97 (69%)
Frame = -1 / -3
Query: 361 TPDSYTKLPTITS*KDEGISSTKTLGTNKNTPATLQKMPSWLTSEYVAKAPFHTMQVLGY 182
T ++ +K +TS*K + I+ K G NK+ P+TL+++P WL + V++ PF +MQ+LG
Sbjct: 494 TSNTNSKFSILTS*KYKRITRNKPFGANKHAPSTLKQVPPWLAPKNVSETPFISMQILGN 315
Query: 181 KLLCWRLTGHIQWRKTLICMAPQHRESTMSAGIRGCQ 71
+ LCWRL HIQ KT ICM+ ++R+STMS GIR Q
Sbjct: 314 QFLCWRLP*HIQRWKTFICMSSKNRKSTMSTGIRSSQ 204
Score = 96.8 bits (205), Expect(2) = 5e-027
Identities = 42/62 (67%), Positives = 46/62 (74%)
Frame = -2 / -1
Query: 366 MARLTPTRSSPLSPLRKMKASPAPRRLALTKTLQPLCKRCLRG*PLNMWRKRHSTPCRSL 187
+ARLTPTRSSP SPLR + ASPA L LT TL PL +CLRG P M RKRHS PC+SL
Sbjct: 499 IARLTPTRSSPFSPLRNINASPATSLLELTNTLHPL*SKCLRGWPRKMCRKRHSFPCKSL 320
Query: 186 AT 181
AT
Sbjct: 319 AT 314
Score = 45.1 bits (92), Expect(2) = 5e-027
Identities = 19/21 (90%), Positives = 19/21 (90%)
Frame = -2 / -1
Query: 111 TENPP*VLVSEAVNVLQKECT 49
TENPP*VLVSEAV VLQ ECT
Sbjct: 244 TENPP*VLVSEAVRVLQNECT 182
>gb|DT472940.1|DT472940 WS01228.BR_B04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_B04 5', mRNA sequence
Length = 914
Score = 230 bits (497), Expect(2) = 1e-060
Identities = 92/146 (63%), Positives = 115/146 (78%)
Frame = +2 / +3
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ P LD ++ PP QEL+A+DLH EW+FRHIFRGQ
Sbjct: 405 FCKTLTASDTSTHGGFSVPRRAAEKVFPTLDYSQTPPAQELIARDLHDNEWKFRHIFRGQ 584
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWSVFVSAKRL AGD+ +F+ + +L +G+RRA R Q +PSSV+SS SMH
Sbjct: 585 PKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMH 764
Query: 419 LGVLATAWHAVNTGTMFTVYYKPRTS 496
+G+LA A HA T + FT++Y PR S
Sbjct: 765 IGLLAAAAHAAATNSRFTIFYNPRAS 842
Score = 24.0 bits (46), Expect(2) = 1e-060
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESL 543
SP+EFV+P +Y++++
Sbjct: 840 SPSEFVIPLVKYIKAV 887
>gb|CK090594.1|CK090594 F014P75.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P75 3', mRNA sequence
Length = 806
Score = 233 bits (503), Expect = 2e-060
Identities = 93/144 (64%), Positives = 113/144 (78%)
Frame = +2 / +3
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ PPLD T QPPTQELV +DLH W FRHI+RGQ
Sbjct: 369 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQ 548
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWS+FV +KRL AGD+ +F+R + +L VGVRRA RQQ +PSSV+S+ SMH
Sbjct: 549 PKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMH 728
Query: 419 LGVLATAWHAVNTGTMFTVYYKPR 490
+GVLA A HA + FT++Y PR
Sbjct: 729 IGVLAAAAHATANRSPFTIFYNPR 800
>gb|CA930279.1|CA930279 MTU2CA.P9.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 582
Score = 229 bits (495), Expect(2) = 2e-060
Identities = 92/146 (63%), Positives = 114/146 (78%)
Frame = +2 / -1
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ P LD + PP QEL+A+DLH EW+FRHIFRGQ
Sbjct: 561 FCKTLTASDTSTHGGFSVPRRAAEKVFPTLDYPQTPPAQELIARDLHDNEWKFRHIFRGQ 382
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWSVFVSAKRL AGD+ +F+ + +L +G+RRA R Q +PSSV+SS SMH
Sbjct: 381 PKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTFMPSSVLSSDSMH 202
Query: 419 LGVLATAWHAVNTGTMFTVYYKPRTS 496
+G+LA A HA T + FT++Y PR S
Sbjct: 201 IGLLAAAAHAAATNSRFTIFYNPRAS 124
Score = 24.0 bits (46), Expect(2) = 2e-060
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +1 / -1
Query: 496 SPAEFVVPCDRYMESL 543
SP+EFV+P +Y++++
Sbjct: 126 SPSEFVIPLVKYIKAV 79
>gb|AI166599.1|AI166599 xylem.est.415 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 520
Score = 225 bits (486), Expect = 4e-058
Identities = 89/144 (61%), Positives = 110/144 (76%)
Frame = +2 / +2
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCK LTASDTSTHGGFSV RR A++ PPLD + QPP+QELV +DLH W FRHI+RGQ
Sbjct: 20 FCKALTASDTSTHGGFSVPRRAAEKLFPPLDYSMQPPSQELVVRDLHDNTWTFRHIYRGQ 199
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWS+FV +KRL AGD+ +F+R + L VGVR A RQQ +PSSV+S+ SMH
Sbjct: 200 PKRHLLTTGWSLFVGSKRLKAGDSVLFIRNEKSHLMVGVRHANRQQTTLPSSVLSADSMH 379
Query: 419 LGVLATAWHAVNTGTMFTVYYKPR 490
+GVLA A HA + FT++Y PR
Sbjct: 380 IGVLAAAAHAAGNRSPFTIFYNPR 451
>gb|CN519772.1|CN519772 GQ0106.B3_E05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_E05 5', mRNA sequence
Length = 779
Score = 162 bits (349), Expect(3) = 8e-057
Identities = 63/98 (64%), Positives = 77/98 (78%)
Frame = +3 / +3
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
GEEAPEQRFTGTIVG D D W SKWR LKVRWDE S++PRPERVSPW+IEPA++PP
Sbjct: 132 GEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERVSPWKIEPALAPP 311
Query: 768 PINPLPVHRPKRPRSNAVASLPESSAPTKEAAPKVTLE 881
+NPLP+ RPKRPR+N + S P+ S T++ + KVT +
Sbjct: 312 ALNPLPLPRPKRPRANMMPSSPDDSVLTRDGSFKVTAD 425
Score = 63.4 bits (132), Expect(3) = 8e-057
Identities = 24/31 (77%), Positives = 28/31 (90%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SPAEF+VP D+YMES+K NY IGMRFKMRF+
Sbjct: 39 SPAEFIVPFDQYMESVKNNYSIGMRFKMRFE 131
Score = 34.1 bits (68), Expect(3) = 8e-057
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2 / +3
Query: 458 GTMFTVYYKPRTS 496
GT+FTVYYKPRTS
Sbjct: 3 GTLFTVYYKPRTS 41
>gb|CK091682.1|CK091682 F118P18.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F118P18 3', mRNA sequence
Length = 828
Score = 219 bits (473), Expect = 2e-056
Identities = 89/135 (65%), Positives = 106/135 (78%)
Frame = +2 / +3
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ PPLD T QPPTQELV +DLH W FRHI+RGQ
Sbjct: 369 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQ 548
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWS+FV +KRL AGD+ +F+R + +L VGVRRA RQQ +PSSV+S+ SMH
Sbjct: 549 PKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMH 728
Query: 419 LGVLATAWHAVNTGT 463
+GVLA A HA T
Sbjct: 729 IGVLAAAAHATANRT 773
>gb|CK090590.1|CK090590 F014P57.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P57 3', mRNA sequence
Length = 817
Score = 219 bits (472), Expect = 3e-056
Identities = 88/130 (67%), Positives = 105/130 (80%)
Frame = +2 / +3
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ PPLD T QPPTQELV +DLH W FRHI+RGQ
Sbjct: 369 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQ 548
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWS+FV +KRL AGD+ +F+R + +L VGVRRA RQQ +PSSV+S+ SMH
Sbjct: 549 PKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMH 728
Query: 419 LGVLATAWHA 448
+GVLA A HA
Sbjct: 729 MGVLAAAAHA 758
>gb|CK091794.1|CK091794 F126P27.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F126P27 3', mRNA sequence
Length = 860
Score = 207 bits (447), Expect(2) = 4e-054
Identities = 82/122 (67%), Positives = 99/122 (81%)
Frame = +2 / +3
Query: 59 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMTRQPPTQELVAKDLHGVEWRFRHIFRGQ 238
FCKTLTASDTSTHGGFSV RR A++ PPLD T QPPTQELV +DLH W FRHI+RGQ
Sbjct: 369 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPTQELVVRDLHDNTWTFRHIYRGQ 548
Query: 239 PRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMH 418
P+RHLL +GWS+FV +KRL AGD+ +F+R + +L VGVRRA RQQ +PSSV+S+ SMH
Sbjct: 549 PKRHLLTTGWSLFVGSKRLKAGDSVLFIRDEKSQLMVGVRRANRQQTTLPSSVLSADSMH 728
Query: 419 LG 424
+G
Sbjct: 729 IG 734
Score = 24.9 bits (48), Expect(2) = 4e-054
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2 / +1
Query: 419 LGVLATAWHAVNTGTMFTVYYKPR 490
LGVLA A HA + +Y PR
Sbjct: 730 LGVLAAAAHATANRSHSPFFYNPR 801
>gb|DN496803.1|DN496803 Q019A06.5pR Populus dormant bud cDNA library Populus tremula cDNA
clone Q019A06 5', mRNA sequence
Length = 651
Score = 133 bits (284), Expect(4) = 4e-048
Identities = 52/103 (50%), Positives = 72/103 (69%)
Frame = +2 / +3
Query: 188 KDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAM 367
KDLHG EW+FRHI+RGQPRRHLL +GWS FV+ K+L +GDA +FLRG+ GELR+GVRRA
Sbjct: 3 KDLHGSEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGVRRAA 182
Query: 368 RQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
+ + + + ++ LA +A++ + F +YY PR S
Sbjct: 183 QVKCGPTFPALWNQQLNHSSLADVANAISMRSAFRIYYNPRAS 311
Score = 48.3 bits (99), Expect(4) = 4e-048
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3 / +3
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDE 701
E+A E+R+TG I G + D W SKW+ L VRWD+
Sbjct: 405 EDAAERRYTGLITGISELDPTRWPGSKWKCLLVRWDD 515
Score = 40.5 bits (82), Expect(4) = 4e-048
Identities = 13/33 (39%), Positives = 26/33 (78%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFKVK 594
S +EF++P +++++SL +++ GMR KMRF+ +
Sbjct: 309 SSSEFIIPFNKFLKSLDQSFSSGMRVKMRFETE 407
Score = 27.2 bits (53), Expect(4) = 4e-048
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3 / +3
Query: 717 RPERVSPWQIEPAVS 761
R RVSPW++EP+ S
Sbjct: 528 RHSRVSPWEVEPSGS 572
>gb|BU879728.1|BU879728 V063F09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 503
Score = 97.7 bits (207), Expect(4) = 2e-044
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +2 / +1
Query: 323 RGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
RG + ELRVGVRR RQQ+++PSSVISS SMHLGVLATA H V T T+F VYYKPRT+
Sbjct: 1 RGHNRELRVGVRRLARQQSSIPSSVISSQSMHLGVLATASHTVLTQTLFVVYYKPRTN 174
Score = 64.8 bits (135), Expect(4) = 2e-044
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = +3 / +1
Query: 657 WAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPPIN 776
W+ S WR LK++WDE ++I RPERVSPW IEP +P N
Sbjct: 325 WSGSIWRSLKIQWDEPATIQRPERVSPWDIEPFAAPASPN 444
Score = 40.0 bits (81), Expect(4) = 2e-044
Identities = 11/28 (39%), Positives = 23/28 (82%)
Frame = +1 / +1
Query: 505 EFVVPCDRYMESLKRNYPIGMRFKMRFK 588
++++ ++Y+E++K + +GMRFKMRF+
Sbjct: 175 QYIIGLNKYLEAVKNGFSVGMRFKMRFE 258
Score = 34.1 bits (68), Expect(4) = 2e-044
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +3 / +1
Query: 588 GEEAPEQRFTGTIVG 632
GE++PE+RFTGTIVG
Sbjct: 259 GEDSPERRFTGTIVG 303
>gb|BU870838.1|BU870838 Q019A06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 684
Score = 106 bits (226), Expect(4) = 6e-040
Identities = 43/95 (45%), Positives = 63/95 (66%)
Frame = +2 / +3
Query: 212 RFRHIFRGQPRRHLLQSGWSVFVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPS 391
+FRHI+RGQPRRHLL +GWS V+ K+L +GDA +FLRG+ GELR+GVR A + +
Sbjct: 3 KFRHIYRGQPRRHLLTTGWSASVNNKKLVSGDAVLFLRGEDGELRLGVRTAAQVKCGPTF 182
Query: 392 SVISSHSMHLGVLATAWHAVNTGTMFTVYYKPRTS 496
+ + ++ LA +A++ + F +YY PR S
Sbjct: 183 PALWNQHLNQSSLADVANAISMRSAFRIYYNPRAS 287
Score = 48.3 bits (99), Expect(4) = 6e-040
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3 / +3
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDE 701
E+A E+R+TG I G + D W SKW+ L VRWD+
Sbjct: 381 EDAAERRYTGLITGISELDPTRWPGSKWKCLLVRWDD 491
Score = 40.5 bits (82), Expect(4) = 6e-040
Identities = 13/33 (39%), Positives = 26/33 (78%)
Frame = +1 / +3
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFKVK 594
S +EF++P +++++SL +++ GMR KMRF+ +
Sbjct: 285 SSSEFIIPFNKFLKSLDQSFSSGMRVKMRFETE 383
Score = 25.8 bits (50), Expect(4) = 6e-040
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3 / +3
Query: 726 RVSPWQIEPAVS 761
RVSPW++EP+ S
Sbjct: 513 RVSPWEVEPSGS 548
>gb|DT491850.1|DT491850 WS02548.C21_P18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_P18 3', mRNA sequence
Length = 302
Score = 91.3 bits (193), Expect(3) = 4e-039
Identities = 36/48 (75%), Positives = 38/48 (79%)
Frame = +3 / -1
Query: 588 GEEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERV 731
GEEAPEQRFTGTIVG D D W SKWR LKVRWDE S++PRPERV
Sbjct: 146 GEEAPEQRFTGTIVGIEDADPGRWKNSKWRCLKVRWDETSTMPRPERV 3
Score = 72.1 bits (151), Expect(3) = 1e-022
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -1 / +1
Query: 733 ETLSGRGMEEASSHLTLR*RHLDSAHPA*SGSTFPTMVPVNLCSGA 596
ETLSGRGM E SSHLTLR HL+ H S S+ PT+VPVNLCSGA
Sbjct: 1 ETLSGRGMVEVSSHLTLRHLHLEFFHLPGSASSIPTIVPVNLCSGA 138
Score = 63.4 bits (132), Expect(3) = 4e-039
Identities = 24/31 (77%), Positives = 28/31 (90%)
Frame = +1 / -1
Query: 496 SPAEFVVPCDRYMESLKRNYPIGMRFKMRFK 588
SPAEF+VP D+YMES+K NY IGMRFKMRF+
Sbjct: 239 SPAEFIVPFDQYMESVKNNYSIGMRFKMRFE 147
Score = 46.0 bits (94), Expect(3) = 4e-039
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / -1
Query: 431 ATAWHAVNTGTMFTVYYKPRTS 496
ATAW +TGT+FTVYYKPRTS
Sbjct: 302 ATAWQKNSTGTLFTVYYKPRTS 237
Score = 36.8 bits (74), Expect(3) = 1e-022
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2 / +3
Query: 585 KPHFKSHPYRVISFQ*FHIAITGNNKL 505
K HFK HPY +I H+ I G+N+L
Sbjct: 150 KSHFKPHPYGIIILDRLHVLIKGDNEL 230
Score = 35.4 bits (71), Expect(3) = 1e-022
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -2 / +1
Query: 495 LVLGL**TVNMVPVLTACHAV 433
LVLGL**TVN VPV CHAV
Sbjct: 238 LVLGL**TVNRVPVEFFCHAV 300
>gb|CX171881.1|CX171881 A07_69-49_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 756
Score = 96.4 bits (204), Expect(3) = 2e-035
Identities = 40/74 (54%), Positives = 54/74 (72%)
Frame = +2 / +2
Query: 275 FVSAKRLGAGDAFIFLRGDSGELRVGVRRAMRQQANVPSSVISSHSMHLGVLATAWHAVN 454
FVSAKRL AGD+ +F+ + +L +G++RA R Q +PSSV+SS SMHLG+LA A HA
Sbjct: 11 FVSAKRLIAGDSVLFIWNEKNQLLLGIKRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAA 190
Query: 455 TGTMFTVYYKPRTS 496
T + FT++Y PR S
Sbjct: 191 TNSRFTIFYNPRAS 232
Score = 67.0 bits (140), Expect(3) = 2e-035
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +3 / +2
Query: 591 EEAPEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPP 767
EE+ +R+ GTI G D D A W S WR +KV WDE+++ R RVS W+IEP + P
Sbjct: 329 EESSVRRYMGTITGISDLDVARWPNSLWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP 505
Score = 24.4 bits (47), Expect(3) = 2e-035
Identities = 6/16 (37%), Positives = 14/16 (87%)
Frame = +1 / +2
Query: 496 SPAEFVVPCDRYMESL 543
SP+EF++P +Y++++
Sbjct: 230 SPSEFIIPLAKYLKAV 277
>gb|CX173766.1|CX173766 B05_69-92_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 611
Score = 103 bits (220), Expect = 2e-021
Identities = 43/76 (56%), Positives = 52/76 (68%)
Frame = +3 / +1
Query: 600 PEQRFTGTIVGNVDPDQAGWAESKWRYLKVRWDEASSIPRPERVSPWQIEPAVSPPPINP 779
PE+RF+GTIVG D +GWA+S WR LKV WDE SSI RP RVSPW +EP V+ P N
Sbjct: 10 PERRFSGTIVGVGDNISSGWADSDWRSLKVHWDEPSSILRP*RVSPWDLEPLVATTPWNS 189
Query: 780 LPVHRPKRPRSNAVAS 827
P+ R KR R + + S
Sbjct: 190 QPMQRNKRARPSGLPS 237
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 623,299,051
Number of Sequences: 369679
Number of extensions: 9775532
Number of successful extensions: 65848
Number of sequences better than 1.0e-020: 23
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 15475378221
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)