TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2750663.2.1
         (1282 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV253102.1|CV253102  PX0019.B21_H22 PT-X-FL-A-1 Populus t...   257   1e-067

>gb|CV253102.1|CV253102 PX0019.B21_H22 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_H22
            3', mRNA sequence
          Length = 648

 Score =  257 bits (556), Expect = 1e-067
 Identities = 108/130 (83%), Positives = 118/130 (90%)
 Frame = -1 / -1

                                                                        
Query: 1282 IVQSTVMPCALVEKAIFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCENIT 1103
            IVQSTVMPC+LVEKA+FGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCE IT
Sbjct: 390  IVQSTVMPCSLVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQIT 211

                                                                        
Query: 1102 QEVARLVKANAAHIKSQMGWRTVILLLSITARHPDASEVGFEAIVFIMTEGAHLSLANYG 923
            QEV RLVKANAAHI+S MGWRT+  LLSITARHPDA+E GF+A+ FIM +G+HL  ANY 
Sbjct: 210  QEVGRLVKANAAHIRSLMGWRTITSLLSITARHPDAAEAGFDALFFIMCDGSHLLPANYV 31

                      
Query: 922  FCIDAARQFA 893
             C+DAARQFA
Sbjct: 30   LCVDAARQFA 1




 Score =  175 bits (376), Expect = 7e-043
 Identities = 82/129 (63%), Positives = 95/129 (73%)
 Frame = +3 / +2

                                                                        
Query: 894  ANCRAASMQKP*FASER*APSVMMNTIASKPTSEASGWRAVMESSNITVLQPICDFICAA 1073
            ANC AAS Q+ *FA  +* PS M+   AS P S ASG RAVMES ++ V  PI D +CAA
Sbjct: 2    ANCLAASTQRT*FAGNK*DPSHMIKNNASNPASAASGCRAVMESKDVIVRHPIRDLMCAA 181

                                                                        
Query: 1074 FALTSRATSCVMFSQYASATRASSLRTNCNDLSNSSARFSLYGSNLWHILRSPKIAFSTR 1253
            FA T R TS V+ SQYASATRASS +T+C+DL +SSARFSL GS+ W I RSPK AFST+
Sbjct: 182  FAFTRRPTS*VICSQYASATRASSFKTSCSDLKSSSARFSL*GSSRWQIRRSPKTAFSTK 361

                     
Query: 1254 AHGITVD*T 1280
              GITVD*T
Sbjct: 362  EQGITVD*T 388




 Score =  115 bits (245), Expect = 8e-025
 Identities = 54/128 (42%), Positives = 80/128 (62%)
 Frame = +2 / +1

                                                                        
Query: 896  KLPCRIDAEAIVR**KVSPLCHDEHDSLKTDFGSIWMACCNGEQQYYCSPAHL*LYMCRI 1075
            KLPC I+ E I+  *++ P+ HD+   +++ F SIWM   +G+Q    +P H   Y+C I
Sbjct: 4    KLPCCINTENIICR*QMRPITHDKEQCIESCFSSIWMPSSDGKQGCNRTPPH*RSYVCSI 183

                                                                        
Query: 1076 CFDEPCNLLCDVLTIRICYPCVELEN*LQRPQ*FISKILLVW*QPLAYPQESKNSFLHES 1255
            CF +  + L ++ T+ I    ++L++ LQ PQ FIS++LLV  QPLA P+ESKNS L+  
Sbjct: 184  CFHKATHFLSNLFTVCISNTGIKLQDKLQ*PQKFISQVLLVGQQPLANPEESKNSLLY*G 363

                    
Query: 1256 TRHNCGLN 1279
             RH   LN
Sbjct: 364  ARHYS*LN 387



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 638,656,040
Number of Sequences: 369679
Number of extensions: 9203665
Number of successful extensions: 47244
Number of sequences better than 1.0e-020: 1
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 17982293073
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)