TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647895.2.1
(709 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ779747.1|AJ779747 AJ779747 Populus euphratica root 3-6... 123 1e-027
gb|AJ779846.1|AJ779846 AJ779846 Populus euphratica root 3-6... 122 2e-027
gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Popu... 122 2e-027
gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Popu... 122 2e-027
gb|AJ779780.1|AJ779780 AJ779780 Populus euphratica root 3-6... 122 3e-027
gb|CX185133.1|CX185133 H07_45-100_15.ab1 leaf inoculated wi... 122 3e-027
gb|DT526538.1|DT526538 WS02048.C21_E23 PTxN-IB-N-A-11 Popul... 122 3e-027
gb|CK091033.1|CK091033 F040P93.3pR Populus flower cDNA libr... 120 1e-026
gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus tri... 120 1e-026
gb|CV253885.1|CV253885 WS0223.B21_F12 PTxD-ICC-A-12 Populus... 120 1e-026
gb|CV255258.1|CV255258 WS02412.B21_I07 PTxD-ICC-N-A-14 Popu... 120 1e-026
gb|CV255700.1|CV255700 WS02414.B21_M15 PTxD-ICC-N-A-14 Popu... 120 1e-026
gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Popul... 120 1e-026
gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Popu... 120 1e-026
gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Popul... 120 1e-026
gb|DT470401.1|DT470401 WS01920.C21_M05 PT-DX-N-A-10 Populus... 111 5e-024
gb|DT490349.1|DT490349 WS02544.B21_L12 PT-MB-N-A-15 Populus... 100 1e-020
>gb|AJ779747.1|AJ779747 AJ779747 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800006D01F1, mRNA sequence
Length = 569
Score = 123 bits (263), Expect = 1e-027
Identities = 52/117 (44%), Positives = 72/117 (61%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS + F+
Sbjct: 67 EIEIGDGPPDIRLTGQCIDALKKAGFEVMWSKDLAVDSPVPWYLPLDKSHFSLSSFRLTA 246
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR +T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 247 VGRFITKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 417
>gb|AJ779846.1|AJ779846 AJ779846 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800008E07F1, mRNA sequence
Length = 480
Score = 122 bits (262), Expect = 2e-027
Identities = 52/117 (44%), Positives = 72/117 (61%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS + F+
Sbjct: 64 EIEIGDGPPDIRLTGQCIDALKKAGFEVMWSKDLAVDSPVPWYLPLDKSHFSRSSFRLTA 243
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR +T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 244 VGRFITKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 414
>gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 3', mRNA sequence
Length = 910
Score = 122 bits (261), Expect = 2e-027
Identities = 53/117 (45%), Positives = 68/117 (58%)
Frame = -1 / -2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS F+
Sbjct: 582 EIEIGDGLPDIRSTGQCIDALKKAGFEVIWSKDLAVGSPMPWYLPLDTTHFSLNSFRLTA 403
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR TR +V LE+L +AP GS + L A+ GL++GGR+ IFT FF RKP
Sbjct: 402 VGRFFTRNMVKALEYLGVAPKGSQRVQDFLEKAAQGLVEGGRKEIFTPLFFFFARKP 232
>gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_H07 3', mRNA sequence
Length = 900
Score = 122 bits (261), Expect = 2e-027
Identities = 53/117 (45%), Positives = 68/117 (58%)
Frame = -1 / -1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS F+
Sbjct: 582 EIEIGDGLPDIRSTGQCIDALKKAGFEVIWSKDLAVGSPMPWYLPLDTTHFSLNSFRLTA 403
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR TR +V LE+L +AP GS + L A+ GL++GGR+ IFT FF RKP
Sbjct: 402 VGRFFTRNMVKALEYLGVAPKGSQRVQDFLEKAAQGLVEGGRKEIFTPLFFFFARKP 232
>gb|AJ779780.1|AJ779780 AJ779780 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800007B01F1, mRNA sequence
Length = 531
Score = 122 bits (260), Expect = 3e-027
Identities = 52/117 (44%), Positives = 71/117 (60%)
Frame = -1 / +2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E ++GD DI QC+ A K GFEV+ +KDLA P PWY +D FS + F+
Sbjct: 35 EIQIGDGPPDIRLTGQCIDALKKAGFEVMCSKDLAVDSPVPWYLPLDKSHFSLSSFRLTA 214
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR +T+ +V LEF+ +AP GS + L A++GLL+GGR+ IFT FF + RKP
Sbjct: 215 VGRFITKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLLEGGRKEIFTPLFFFVARKP 385
>gb|CX185133.1|CX185133 H07_45-100_15.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 701
Score = 122 bits (260), Expect = 3e-027
Identities = 52/117 (44%), Positives = 71/117 (60%)
Frame = -1 / +1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS + F+
Sbjct: 115 EIEIGDGLPDIRLTGQCIDALKKAGFEVMWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 294
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 295 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 465
>gb|DT526538.1|DT526538 WS02048.C21_E23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_E23 3', mRNA sequence
Length = 666
Score = 122 bits (260), Expect = 3e-027
Identities = 52/117 (44%), Positives = 71/117 (60%)
Frame = -1 / -2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A K GFEV+++KDLA P PWY +D FS + F+
Sbjct: 641 EIEIGDGLPDIRLTGQCIDALKKAGFEVMWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 462
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 461 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 291
>gb|CK091033.1|CK091033 F040P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F040P93 3', mRNA sequence
Length = 814
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 613 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 434
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 433 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 263
>gb|CV226456.1|CV226456 WS0164.B21_F04 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_F04
3', mRNA sequence
Length = 847
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -2
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 612 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 433
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 432 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 262
>gb|CV253885.1|CV253885 WS0223.B21_F12 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0223_F12 3', mRNA sequence
Length = 734
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 588 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 409
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 408 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 238
>gb|CV255258.1|CV255258 WS02412.B21_I07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_I07 3', mRNA sequence
Length = 704
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -1
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 584 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 405
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 404 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 234
>gb|CV255700.1|CV255700 WS02414.B21_M15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02414_M15 3', mRNA sequence
Length = 698
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 612 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 433
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 432 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 262
>gb|CV259425.1|CV259425 WS02011.B21_F06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_F06 3', mRNA sequence
Length = 788
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 588 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 409
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 408 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 238
>gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_C07 3', mRNA sequence
Length = 919
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 584 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 405
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 404 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 234
>gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_N19 3', mRNA sequence
Length = 973
Score = 120 bits (256), Expect = 1e-026
Identities = 51/117 (43%), Positives = 70/117 (59%)
Frame = -1 / -3
Query: 634 EXELGDXXXDIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPR 455
E E+GD DI QC+ A GFEV+++KDLA P PWY +D FS + F+
Sbjct: 638 EIEIGDGLPDIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTA 459
Query: 454 PGRIVTRAIVNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
GR T+ +V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 458 VGRFFTKNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 288
>gb|DT470401.1|DT470401 WS01920.C21_M05 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_M05 3', mRNA sequence
Length = 567
Score = 111 bits (237), Expect = 5e-024
Identities = 47/108 (43%), Positives = 65/108 (60%)
Frame = -1 / +1
Query: 607 DIXXXRQCVQAXKXXGFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAI 428
DI QC+ A GFEV+++KDLA P PWY +D FS + F+ GR T+ +
Sbjct: 7 DIRLTGQCIDALTKAGFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTAVGRFFTKNM 186
Query: 427 VNTLEFLRIAPAGSMGAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
V LEF+ +AP GS + L A++GL++GGR+ IFT FF + RKP
Sbjct: 187 VKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 330
>gb|DT490349.1|DT490349 WS02544.B21_L12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_L12 3', mRNA sequence
Length = 575
Score = 100 bits (213), Expect = 1e-020
Identities = 42/93 (45%), Positives = 59/93 (63%)
Frame = -1 / +3
Query: 562 GFEVVFAKDLAQVFPCPWYRVMDPXXFSWAHFQCPRPGRIVTRAIVNTLEFLRIAPAGSM 383
GFEV+++KDLA P PWY +D FS + F+ GR T+ +V LEF+ +AP GS
Sbjct: 9 GFEVIWSKDLAVGSPVPWYLPLDTSHFSLSSFRLTAVGRFFTKNMVKALEFVGLAPKGSQ 188
Query: 382 GAYNVLMSASDGLLKGGREGIFTATFFVLGRKP 284
+ L A++GL++GGR+ IFT FF + RKP
Sbjct: 189 RVQDFLEKAAEGLVEGGRKEIFTPLFFFVARKP 287
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 325,506,213
Number of Sequences: 369679
Number of extensions: 5268471
Number of successful extensions: 75476
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8890063140
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)