TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2643604.2.1
(578 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus... 166 1e-040
gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA librar... 160 7e-039
gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Librar... 158 2e-038
gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus ... 156 8e-038
gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus... 156 8e-038
gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Popul... 156 8e-038
gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Popu... 156 8e-038
gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Po... 156 8e-038
gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Popul... 156 8e-038
gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA li... 152 1e-036
gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Popul... 152 2e-036
gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus... 151 3e-036
gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus tricho... 149 1e-035
gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid lib... 139 1e-032
gb|BP933399.1|BP933399 BP933399 full-length enriched poplar... 137 5e-032
gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Po... 137 7e-032
gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem c... 85 4e-029
gb|DN489864.1|DN489864 T087C12.3pR Populus shoot meristem c... 113 4e-026
gb|CV241963.1|CV241963 WS02513.B21_M01 PT-MB-N-A-15 Populus... 116 2e-025
gb|CV261185.1|CV261185 WS02016.B21_B13 PTxN-IB-N-A-11 Popul... 116 2e-025
gb|CV264069.1|CV264069 WS02023.B21_I14 PTxN-IB-N-A-11 Popul... 116 2e-025
gb|CK092664.1|CK092664 G090P88.3pR Populus tension wood cDN... 114 4e-025
gb|CF228348.1|CF228348 PtaXM0011H7H0715 Poplar cDNA library... 113 1e-024
gb|CV259744.1|CV259744 WS02012.B21_C15 PTxN-IB-N-A-11 Popul... 110 1e-023
gb|CX168744.1|CX168744 E01_69-81_09.ab1 leaf inoculated wit... 106 9e-023
gb|DN486644.1|DN486644 P047G09.3pR Populus petioles cDNA li... 106 9e-023
gb|DT481483.1|DT481483 WS02532.BR_A02 PT-MB-N-A-15 Populus ... 103 8e-022
gb|DT486813.1|DT486813 WS02532.B21_A02 PT-MB-N-A-15 Populus... 103 8e-022
gb|DN489293.1|DN489293 T021A10.3pR Populus shoot meristem c... 73 5e-021
gb|BI137613.1|BI137613 F089P39Y Populus flower cDNA library... 73 5e-021
gb|CV233282.1|CV233282 WS0121.B21_J05 PT-GT-FL-A-3 Populus ... 100 6e-021
>gb|DT476893.1|DT476893 WS01231.B21_D17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_D17 3', mRNA sequence
Length = 992
Score = 166 bits (357), Expect = 1e-040
Identities = 68/102 (66%), Positives = 78/102 (76%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG+TPFKG GNEETLSNV+S+ LKFP NP VSFHARDLIRGLL+KEP RLGS++GA
Sbjct: 534 LLYGRTPFKGSGNEETLSNVVSRSLKFPSNPIVSFHARDLIRGLLIKEPGDRLGSAKGAA 355
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTPVTTRKKKE 271
EIK+HPFF+GLNWALIR PPE D T + K+
Sbjct: 354 EIKQHPFFDGLNWALIRCAIPPELPNQCDVGIASNTFSQNKD 229
Score = 118 bits (252), Expect = 3e-026
Identities = 51/80 (63%), Positives = 60/80 (75%)
Frame = +2 / +2
Query: 329 SGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGNFKP 508
SGG HRI+AQ RPSKKGC LIS APL +PSR GSF ++PLI+SRA KLT GL GN +
Sbjct: 287 SGGIAHRIRAQLRPSKKGCCLISAAPLADPSRSPGSFINNPLIKSRA*KLTIGLLGNLRL 466
Query: 509 CEITFESVSSLPGPLNGVLP 568
+ T ++VSS P PL GVLP
Sbjct: 467 RDTTLDNVSSFPDPLKGVLP 526
>gb|DN494990.1|DN494990 N009H07.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N009H07 5', mRNA sequence
Length = 760
Score = 160 bits (344), Expect = 7e-039
Identities = 62/94 (65%), Positives = 77/94 (81%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPFKG GN TL NV+ Q L+FPD+PA ++ ++DLIRGLLVKEP++RLG RGAT
Sbjct: 385 LLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATAYASQDLIRGLLVKEPQHRLGVKRGAT 564
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFE +NWALIR + PPE K ++T P+P
Sbjct: 565 EIKQHPFFESVNWALIRCSTPPEVPKPVETEPSP 666
Score = 101 bits (216), Expect = 3e-021
Identities = 50/91 (54%), Positives = 55/91 (60%)
Frame = +2 / -3
Query: 296 GVGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWK 475
G G+VS F SGG +H I+AQF SKKGC LISVAPL PS GS TS P I+S
Sbjct: 665 GEGSVSTGFGTSGGVLHLIRAQFTLSKKGCCLISVAPLFTPSLC*GSLTSKPRIKSWLA* 486
Query: 476 LTAGLSGNFKPCEITFESVSSLPGPLNGVLP 568
AG SGN C T V+ P PLNGVLP
Sbjct: 485 AVAGESGNLSCCPTTLNKVARFPEPLNGVLP 393
>gb|CA931263.1|CA931263 MTU2TA.P4.H08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 491
Score = 158 bits (340), Expect = 2e-038
Identities = 63/94 (67%), Positives = 75/94 (79%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYGKTPFKG GN TL NV+ Q L+FPD+PA S+ +RDLIRGLLVKEP+ RLG RGAT
Sbjct: 88 LLYGKTPFKGSGNRATLFNVVGQQLRFPDSPATSYASRDLIRGLLVKEPQQRLGVKRGAT 267
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EI +HPFFEG+NWALIR + PPE + ++T P P
Sbjct: 268 EI*QHPFFEGVNWALIRCSTPPEVPRPVETEPPP 369
Score = 106 bits (226), Expect = 1e-022
Identities = 51/91 (56%), Positives = 57/91 (62%)
Frame = +2 / -1
Query: 296 GVGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWK 475
G G+VS SGG +H I+AQF PSKKGC ISVAPL P+ GSFTS P I+SR
Sbjct: 368 GGGSVSTGLGTSGGVLHLIRAQFTPSKKGCC*ISVAPLFTPNLC*GSFTSKPRIKSRLA* 189
Query: 476 LTAGLSGNFKPCEITFESVSSLPGPLNGVLP 568
L AG SGN C T V+ P PLNGVLP
Sbjct: 188 LVAGESGNLSCCPTTLNRVARFPEPLNGVLP 96
>gb|CV232433.1|CV232433 WS0197.B21_J03 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0197_J03 3', mRNA sequence
Length = 745
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 544 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 365
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 364 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 263
>gb|DT485334.1|DT485334 WS02527.B21_O22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02527_O22 3', mRNA sequence
Length = 904
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 496 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 317
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 316 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 215
>gb|DT507221.1|DT507221 WS02417.BR_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 5', mRNA sequence
Length = 644
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 88 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 267
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 268 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 369
>gb|DT511863.1|DT511863 WS02417.B21_K22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_K22 3', mRNA sequence
Length = 644
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 557 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 378
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 377 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 276
>gb|DT515685.1|DT515685 WS02429.B21.1_D22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_D22 3', mRNA sequence
Length = 894
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 490 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 311
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 310 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 209
>gb|DT523539.1|DT523539 WS02039.B21_P11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_P11 3', mRNA sequence
Length = 925
Score = 156 bits (336), Expect = 8e-038
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 568 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 389
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 388 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 287
>gb|BU836496.1|BU836496 T087C12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 724
Score = 152 bits (327), Expect = 1e-036
Identities = 62/77 (80%), Positives = 69/77 (89%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LLYG TPFKG GNEETL+NV+S+ LKFPD+P VSF ARDLIR LLVKEPE RLG+ +GAT
Sbjct: 487 LLYGITPFKGSGNEETLANVVSESLKFPDSPLVSFQARDLIRELLVKEPENRLGTHKGAT 666
Query: 396 EIKRHPFFEGLNWALIR 346
EIK+HPFFEGLNWALIR
Sbjct: 667 EIKQHPFFEGLNWALIR 717
Score = 108 bits (230), Expect = 3e-023
Identities = 49/74 (66%), Positives = 56/74 (75%)
Frame = +2 / -3
Query: 347 RIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWKLTAGLSGNFKPCEITFE 526
R+ AQF+PSKKGC LISVAPL PS +SGS TSS LIRS A KLT+GLSGN + + T
Sbjct: 716 RMSAQFKPSKKGCCLISVAPLCVPSLFSGSLTSSSLIRSLA*KLTSGLSGNLRLSDTTLA 537
Query: 527 SVSSLPGPLNGVLP 568
SVSS P PL GV+P
Sbjct: 536 SVSSFPEPLKGVMP 495
>gb|CV261322.1|CV261322 WS02016.B21_H12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_H12 3', mRNA sequence
Length = 844
Score = 152 bits (326), Expect = 2e-036
Identities = 61/94 (64%), Positives = 72/94 (76%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN L NV+ Q +FP++P VSF ARDLIRGLLVKEP++RL S RGAT
Sbjct: 575 LLFGKTPFKGSGNRAPLFNVVGQPFRFPESPVVSFAARDLIRGLLVKEPQHRLASKRGAT 396
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 395 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 294
>gb|DT482867.1|DT482867 WS02521.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02521_A02 3', mRNA sequence
Length = 749
Score = 151 bits (325), Expect = 3e-036
Identities = 61/94 (64%), Positives = 72/94 (76%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF RDLIRGLLVKEP++RL RGAT
Sbjct: 527 LLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAPRDLIRGLLVKEPQHRLAYKRGAT 348
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
EIK+HPFFEG+NWALIR PPE K ++ P
Sbjct: 347 EIKQHPFFEGVNWALIRCATPPEIPKPVEIERIP 246
Score = 102 bits (218), Expect = 2e-021
Identities = 49/91 (53%), Positives = 57/91 (62%)
Frame = +2 / +1
Query: 296 GVGAVSMFFRVSGGAVHRIKAQFRPSKKGCRLISVAPLDEPSRYSGSFTSSPLIRSRAWK 475
G+ ++S F +SGG RI AQF PSKKGC LISVAP + GSFTS PLIRS K
Sbjct: 247 GILSISTGFGISGGVAQRINAQFTPSKKGCCLISVAPRLYANLCCGSFTSKPLIRSLGAK 426
Query: 476 LTAGLSGNFKPCEITFESVSSLPGPLNGVLP 568
LT G SGN + T +V+ P PL GVLP
Sbjct: 427 LTTGDSGNRRGWPTTLNNVARFPEPLKGVLP 519
>gb|CN523462.1|CN523462 GQ015M10.T3_B08 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_B08 5', mRNA sequence
Length = 732
Score = 149 bits (320), Expect = 1e-035
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL RGAT
Sbjct: 116 LLFGKTPFKGAGNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGAT 295
Query: 396 EIKRHPFFEGLNWALIRWTAPPETLK 319
EIK+HPFF+ +NWALIR T PPE K
Sbjct: 296 EIKQHPFFQSINWALIRCTNPPEVPK 373
>gb|CK098382.1|CK098382 A012P77.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A012P77 5', mRNA sequence
Length = 614
Score = 139 bits (298), Expect = 1e-032
Identities = 55/79 (69%), Positives = 66/79 (83%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
LL+GKTPFKG GN TL NV+ Q L+FP++P VSF A+DLIRGLLVKEP++RL RGAT
Sbjct: 263 LLFGKTPFKGAGNRATLFNVVGQPLRFPESPTVSFAAKDLIRGLLVKEPQHRLAYRRGAT 442
Query: 396 EIKRHPFFEGLNWALIRWT 340
EIK+HPFF+ +NWALIR T
Sbjct: 443 EIKQHPFFQSINWALIRCT 499
>gb|BP933399.1|BP933399 BP933399 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-050_O04.r 3', mRNA sequence
Length = 652
Score = 137 bits (293), Expect(2) = 5e-032
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = -3 / -1
Query: 543 GNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGL 364
GNEETL+NV+S+ LKFPD+P V F ARDLIR LLVKEPE RLG+ +GATEIK+HPFFEGL
Sbjct: 652 GNEETLANVVSESLKFPDSPLVGFQARDLIRELLVKEPENRLGTHKGATEIKQHPFFEGL 473
Query: 363 NWALIRWTAPPE 328
NWALIR PPE
Sbjct: 472 NWALIRCAIPPE 437
Score = 21.7 bits (41), Expect(2) = 5e-032
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3 / -1
Query: 261 LEFRLNGDDIEFELF* 214
LE + G+ +EFELF*
Sbjct: 382 LECKATGELLEFELF* 335
>gb|DT520021.1|DT520021 WS02446.B21.1_F15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_F15 3', mRNA sequence
Length = 911
Score = 137 bits (293), Expect = 7e-032
Identities = 55/80 (68%), Positives = 64/80 (80%)
Frame = -3 / -2
Query: 558 PFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHP 379
PFKG GN TL NV+ Q L+FP++P VSF ARDLIRGLLVKEP++RL RGATEIK+HP
Sbjct: 910 PFKGAGNRATLYNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHP 731
Query: 378 FFEGLNWALIRWTAPPETLK 319
FF+ +NWALIR T PPE K
Sbjct: 730 FFQSINWALIRCTNPPEVPK 671
>gb|DN499789.1|DN499789 T087C12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T087C12 5', mRNA sequence
Length = 852
Score = 85.4 bits (180), Expect(2) = 4e-029
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRG 448
LLYG TPFKG GNEETL+NV+S+ LKFPD+P VSF ARDLIRG
Sbjct: 486 LLYGITPFKGSGNEETLANVVSESLKFPDSPLVSFQARDLIRG 614
Score = 62.5 bits (130), Expect(2) = 4e-029
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 417 GSSRGATEIKRHPFFEGLNWALIRWTAPPE 328
G+ +GATEIK+HPFFEGLNWALIR PPE
Sbjct: 647 GTHKGATEIKQHPFFEGLNWALIRCAIPPE 736
>gb|DN489864.1|DN489864 T087C12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T087C12 3', mRNA sequence
Length = 517
Score = 113 bits (242), Expect(2) = 4e-026
Identities = 46/61 (75%), Positives = 51/61 (83%)
Frame = -3 / -2
Query: 510 QGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPP 331
+ LKFPD+P VSF ARDLIR L VKEPE RLG+ +GATEIK+HPFFEGLNWALIR PP
Sbjct: 516 ESLKFPDSPLVSFQARDLIRELQVKEPENRLGTHKGATEIKQHPFFEGLNWALIRCAIPP 337
Query: 330 E 328
E
Sbjct: 336 E 334
Score = 24.0 bits (46), Expect(2) = 4e-026
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3 / -2
Query: 288 TRKKKEGKCLEFRLNGDDIEFELF* 214
+R K + LE + G+ +EFELF*
Sbjct: 306 SRHGKNTQYLECKATGELLEFELF* 232
>gb|CV241963.1|CV241963 WS02513.B21_M01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_M01 3', mRNA sequence
Length = 754
Score = 116 bits (247), Expect = 2e-025
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L YG TPF+G +E TL+N++++ L+FP P V A+DLI LLVK+P R+GS+ GA+
Sbjct: 386 LFYGVTPFRGVDHELTLANIVARALEFPKEPVVPATAKDLISQLLVKDPARRMGSTMGAS 207
Query: 396 EIKRHPFFEGLNWALIRWTAPP 331
+K HPFF+G+NWAL+R T PP
Sbjct: 206 AVKHHPFFQGVNWALLRCTPPP 141
>gb|CV261185.1|CV261185 WS02016.B21_B13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_B13 3', mRNA sequence
Length = 592
Score = 116 bits (247), Expect = 2e-025
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L YG TPF+G +E TL+N++++ L+FP P V A+DLI LLVK+P R+GS+ GA+
Sbjct: 372 LFYGVTPFRGVDHELTLANIVARALEFPKEPVVPATAKDLISQLLVKDPARRMGSTMGAS 193
Query: 396 EIKRHPFFEGLNWALIRWTAPP 331
+K HPFF+G+NWAL+R T PP
Sbjct: 192 AVKHHPFFQGVNWALLRCTPPP 127
>gb|CV264069.1|CV264069 WS02023.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_I14 3', mRNA sequence
Length = 423
Score = 116 bits (247), Expect = 2e-025
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
L YG TPF+G +E TL+N++++ L+FP P V A+DLI LLVK+P R+GS+ GA+
Sbjct: 384 LFYGVTPFRGVDHELTLANIVARALEFPKEPVVPATAKDLISQLLVKDPARRMGSTMGAS 205
Query: 396 EIKRHPFFEGLNWALIRWTAPP 331
+K HPFF+G+NWAL+R T PP
Sbjct: 204 AVKHHPFFQGVNWALLRCTPPP 139
>gb|CK092664.1|CK092664 G090P88.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G090P88 3', mRNA sequence
Length = 593
Score = 114 bits (244), Expect = 4e-025
Identities = 46/72 (63%), Positives = 55/72 (76%)
Frame = -3 / -2
Query: 486 PAVSFHARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPETLKNIDT 307
P VSFHARDLIRGLL+KEP RLGS++GA EIK+HPF +GLNWALIR T PPE K+ D
Sbjct: 592 PIVSFHARDLIRGLLIKEPRNRLGSAKGAAEIKQHPFLDGLNWALIRCTIPPELPKHYDA 413
Query: 306 APTPVTTRKKKE 271
T +T + K+
Sbjct: 412 GITSITFSQNKD 377
>gb|CF228348.1|CF228348 PtaXM0011H7H0715 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 645
Score = 113 bits (241), Expect = 1e-024
Identities = 43/82 (52%), Positives = 60/82 (73%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+ YG TPFKG +E TL+N++++ L+FP P++ A+DLI LL+K+P RLGS+ GAT
Sbjct: 319 MFYGVTPFKGMDHELTLANIVARALEFPKEPSIPVLAKDLITQLLIKDPVRRLGSTMGAT 498
Query: 396 EIKRHPFFEGLNWALIRWTAPP 331
IK H FF+G+NWAL+R PP
Sbjct: 499 AIKHHQFFDGINWALLRCRTPP 564
>gb|CV259744.1|CV259744 WS02012.B21_C15 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_C15 3', mRNA sequence
Length = 775
Score = 110 bits (234), Expect = 1e-023
Identities = 42/83 (50%), Positives = 61/83 (73%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G ++T +N++ + LKFP + VS +A+ L+ LL ++P+ RLGS GA
Sbjct: 618 MLYGYTPFRGKTRQKTFANILHKDLKFPGSIPVSLNAKQLMYRLLHRDPKNRLGSREGAN 439
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IKRHPFF+G+NWAL+R PPE
Sbjct: 438 DIKRHPFFKGVNWALVRCLNPPE 370
>gb|CX168744.1|CX168744 E01_69-81_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 584
Score = 106 bits (227), Expect = 9e-023
Identities = 41/83 (49%), Positives = 60/83 (72%)
Frame = -3 / +3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G ++T +N++ + LKFP VS +A+ L+ LL ++P+ RLGS GA
Sbjct: 273 MLYGYTPFRGKTRQKTFANILHKDLKFPGRIPVSLNAKQLMYRLLHRDPKNRLGSLEGAN 452
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IKRHPFF+G++WAL+R PPE
Sbjct: 453 DIKRHPFFKGVSWALVRCLNPPE 521
>gb|DN486644.1|DN486644 P047G09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P047G09 3', mRNA sequence
Length = 759
Score = 106 bits (227), Expect = 9e-023
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = -3 / -3
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG TPF+G ++T +N++ + LKFP VS +A+ + LL ++P+ RLGS GA
Sbjct: 544 MLYGYTPFRGKTRQKTFANILHKDLKFPGRIPVSLNAKQSMYRLLHRDPKNRLGSREGAN 365
Query: 396 EIKRHPFFEGLNWALIRWTAPPE 328
+IKRHPFF+G+NWAL+R PPE
Sbjct: 364 DIKRHPFFKGVNWALVRCLNPPE 296
>gb|DT481483.1|DT481483 WS02532.BR_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A02 5', mRNA sequence
Length = 880
Score = 103 bits (220), Expect = 8e-022
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = -3 / +2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T +N++ + L FP + VS R LI LL ++P RLGS GA
Sbjct: 305 MLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLSGRQLINALLNRDPSIRLGSKAGAN 484
Query: 396 EIKRHPFFEGLNWALIR 346
EIK+HPFF G+NW LIR
Sbjct: 485 EIKQHPFFRGINWPLIR 535
>gb|DT486813.1|DT486813 WS02532.B21_A02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_A02 3', mRNA sequence
Length = 880
Score = 103 bits (220), Expect = 8e-022
Identities = 39/77 (50%), Positives = 53/77 (68%)
Frame = -3 / -2
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFPDNPAVSFHARDLIRGLLVKEPEYRLGSSRGAT 397
+LYG+TPF+G ++T +N++ + L FP + VS R LI LL ++P RLGS GA
Sbjct: 576 MLYGRTPFRGKNRQKTFANILHKDLTFPSSIPVSLSGRQLINALLNRDPSIRLGSKAGAN 397
Query: 396 EIKRHPFFEGLNWALIR 346
EIK+HPFF G+NW LIR
Sbjct: 396 EIKQHPFFRGINWPLIR 346
>gb|DN489293.1|DN489293 T021A10.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T021A10 3', mRNA sequence
Length = 695
Score = 72.5 bits (152), Expect(2) = 5e-021
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -3 / -1
Query: 465 RDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPET 325
+DL+ LLVK P+ R+GS +G+ EIKRH FF+G+NWALIR PPE+
Sbjct: 254 QDLVGKLLVKNPKRRIGSLKGSVEIKRHEFFKGVNWALIRSIKPPES 114
Score = 47.8 bits (98), Expect(2) = 5e-021
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3 / -1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFP 493
+LYG+TPFKG NE+TL N++ Q L FP
Sbjct: 386 MLYGRTPFKGENNEKTLINILKQPLTFP 303
>gb|BI137613.1|BI137613 F089P39Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 482
Score = 72.5 bits (152), Expect(2) = 5e-021
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -3 / +1
Query: 465 RDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPET 325
+DL+ LLVK P+ R+GS +G+ EIKRH FF+G+NWALIR PPE+
Sbjct: 334 QDLVGKLLVKNPKRRIGSLKGSVEIKRHEFFKGVNWALIRSIKPPES 474
Score = 47.8 bits (98), Expect(2) = 5e-021
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 576 LLYGKTPFKGPGNEETLSNVISQGLKFP 493
+LYG+TPFKG NE+TL N++ Q L FP
Sbjct: 202 MLYGRTPFKGENNEKTLINILKQPLTFP 285
>gb|CV233282.1|CV233282 WS0121.B21_J05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0121_J05 3', mRNA sequence
Length = 539
Score = 100 bits (214), Expect = 6e-021
Identities = 38/58 (65%), Positives = 49/58 (84%)
Frame = -3 / -1
Query: 468 ARDLIRGLLVKEPEYRLGSSRGATEIKRHPFFEGLNWALIRWTAPPETLKNIDTAPTP 295
++DLIRGLLVKEP++RLG RGATEIK+HPFFE +NWALIR + PPE + ++T P+P
Sbjct: 539 SQDLIRGLLVKEPQHRLGVKRGATEIKQHPFFESVNWALIRCSTPPEVPRPVETEPSP 366
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 264,084,610
Number of Sequences: 369679
Number of extensions: 3454075
Number of successful extensions: 50606
Number of sequences better than 1.0e-020: 33
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6901845519
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)