TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623104.2.4
(1628 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Popul... 154 2e-058
gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Popu... 165 1e-054
gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA librar... 135 5e-049
gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA li... 130 2e-046
gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Libra... 133 7e-046
gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Librar... 125 3e-045
gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA li... 94 1e-036
gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal libra... 96 1e-036
gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Po... 129 3e-034
gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Po... 129 5e-033
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 118 6e-032
gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus ... 80 2e-031
gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Po... 129 2e-031
gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Po... 116 2e-030
gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Librar... 131 2e-030
gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Popul... 129 2e-029
gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Libra... 128 1e-028
gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Librar... 126 4e-028
gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Popu... 116 2e-025
gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichoca... 102 2e-022
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 67 7e-022
gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus... 67 2e-021
>gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 5', mRNA sequence
Length = 886
Score = 154 bits (331), Expect(4) = 2e-058
Identities = 64/126 (50%), Positives = 85/126 (67%)
Frame = +2 / +3
Query: 500 DCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIH 679
DC SL NN ++G+ LNS+ FH+ + C+++ ++ V V+A GDSPNTDGIH
Sbjct: 498 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 677
Query: 680 MGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 859
+ S+G+TI N+ IG GDDC+SIGPGTS + I V CGPGHGISIGSLG+ E V ++
Sbjct: 678 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 857
Query: 860 NVKDCT 877
VK T
Sbjct: 858 TVKTTT 875
Score = 94.5 bits (200), Expect(3) = 3e-028
Identities = 45/109 (41%), Positives = 60/109 (55%)
Frame = -3 / -1
Query: 825 PRLPMLMPWPGPQVTPVMFTLEVPGPMEMQSSPTPMTVLVMVIPDESPMWMPSVLGLSPG 646
P+LPML+PWPGP T + LEVPGP++ QSSP P+ MV P + +PSVLGLSP
Sbjct: 823 PKLPMLIPWPGPHATFSIQRLEVPGPIDTQSSPVPILEFKMVTPVDD*T*IPSVLGLSPA 644
Query: 645 AVTVTSLISMSLHRYMFMWKNLELSSVTPDTSPLFTKSITSELGRILQS 499
A T+T M MW + P + LF +S++ + QS
Sbjct: 643 AETLTPCTLTFWQALMTMWNIWLFNDANPVIAMLFELENSSDVAPLGQS 497
Score = 75.3 bits (158), Expect(4) = 2e-058
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +2 / +3
Query: 155 FDITKLGASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTI 334
+ + GA +GKTDSTKA AW+ AC T T+ +PKG F +GQ+ F GPCK + +
Sbjct: 159 YSVLSYGAMPDGKTDSTKAFAAAWSQACASTQPATVSVPKGSFALGQVRFQGPCKNNAIL 338
Score = 38.6 bits (78), Expect(3) = 3e-028
Identities = 22/49 (44%), Positives = 24/49 (48%)
Frame = -3 / -1
Query: 318 LQGPVKLSCPTRKSPLGMRIVCFPVPPHADAHASCTAFVLSVLPLPEAP 172
LQGP L+ P K PLG V V HA A+ A V SV P AP
Sbjct: 322 LQGP*NLT*PKAKLPLGTETVAGCVEAHACDQAAAKALVESVFPSGMAP 176
Score = 31.3 bits (62), Expect(3) = 3e-028
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3 / -1
Query: 471 HTAGPCPSRFPLPVMTRLSTRRIS 400
H+ PCPSR P ++T L+ +IS
Sbjct: 475 HSPAPCPSRVPPDIVTPLTCSKIS 404
Score = 29.0 bits (57), Expect(4) = 2e-058
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2 / +3
Query: 326 VTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITG 436
+ +++DG LLA +D NW+ V+ + I+G
Sbjct: 333 ILVRIDGTLLAPSDYGVLGRAQNWLIFEHVNGVTISG 443
Score = 25.8 bits (50), Expect(4) = 2e-058
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2 / +3
Query: 419 NLVITGKGNLDGQGPAVWS 475
N V G LDGQG +WS
Sbjct: 423 NGVTISGGTLDGQGAGLWS 479
>gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 3', mRNA sequence
Length = 891
Score = 165 bits (354), Expect(2) = 1e-054
Identities = 70/139 (50%), Positives = 92/139 (66%)
Frame = +2 / -1
Query: 500 DCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIH 679
DC SL NN ++G+ LNS+ FH+ + C+++ ++ V V+A GDSPNTDGIH
Sbjct: 855 DCPSGATSLEFSNSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIH 676
Query: 680 MGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 859
+ S+G+TI N+ IG GDDC+SIGPGTS + I V CGPGHGISIGSLG+ E V ++
Sbjct: 675 VQSSTGVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNV 496
Query: 860 NVKDCTLKKTMFGVRIKAY 916
VK T T GVRIK +
Sbjct: 495 TVKTTTFTGTENGVRIKTW 439
Score = 99.1 bits (210), Expect(2) = 7e-024
Identities = 53/139 (38%), Positives = 72/139 (51%)
Frame = -3 / +2
Query: 915 YALMRTPNIVFLRVQSLTLMSVTSFSSLYRPRLPMLMPWPGPQVTPVMFTLEVPGPMEMQ 736
+ L+ TP V + V T+ T S P+LPML+PWPGP T + LEVPGP++ Q
Sbjct: 440 HVLILTPFSVPVNVVVFTVTFCTPAS*ESLPKLPMLIPWPGPHATFSIQRLEVPGPIDTQ 619
Query: 735 SSPTPMTVLVMVIPDESPMWMPSVLGLSPGAVTVTSLISMSLHRYMFMWKNLELSSVTPD 556
SSP P+ MV P + +PSVLGLSP A T+T M MW + P
Sbjct: 620 SSPVPILEFKMVTPVDD*T*IPSVLGLSPAAETLTPCTLTFWQALMTMWNIWLFNDANPV 799
Query: 555 TSPLFTKSITSELGRILQS 499
+ LF +S++ + QS
Sbjct: 800 IAMLFELENSSDVAPLGQS 856
Score = 69.8 bits (146), Expect(2) = 1e-054
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = +2 / -1
Query: 950 IHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCT 1129
I +++ M + NPI ID YCP + S V + DVT+++I G+S+T AV C+
Sbjct: 408 ILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKFDCS 229
Query: 1130 AKVPCTGVTMDDVNVEYS 1183
PC+G+ ++DV + Y+
Sbjct: 228 KTNPCSGIKLEDVKLTYN 175
Score = 36.3 bits (73), Expect(2) = 7e-024
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -3 / +2
Query: 1173 TLTSSMVTPVHGTLAVQSRLTASGVEEVPVMFLKVTSLTVTLE 1045
+ TSS + P HG + +QS TAS V + P + VTSL T E
Sbjct: 185 SFTSSNLIPEHGFVLLQSNFTASSVADDPWISW*VTSLIFTPE 313
>gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 728
Score = 135 bits (289), Expect(2) = 5e-049
Identities = 54/115 (46%), Positives = 78/115 (67%)
Frame = +2 / +3
Query: 575 NSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGP 754
N++ H++ + +L+ ++TVT+P +SPNTDGIH+ + I IT++VIG GDDCISI
Sbjct: 15 NAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCISIVS 194
Query: 755 GTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
G+ V G+TCGPGHGISIGSLG + + V+++ V L T GVRIK ++
Sbjct: 195 GSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 359
Score = 80.8 bits (170), Expect(2) = 5e-049
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +2 / +3
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSL 1120
VS I ++NI+M ANPI ID YC S + VK+V +KNI GTS++ A+
Sbjct: 375 VSNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRF 554
Query: 1121 LCTAKVPCTGVTMDDVNVEYSG 1186
C+ PC G+ + D+N+E +G
Sbjct: 555 DCSKAYPCQGILLQDINLERAG 620
>gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 5', mRNA sequence
Length = 820
Score = 130 bits (279), Expect(2) = 2e-046
Identities = 53/115 (46%), Positives = 77/115 (66%)
Frame = +2 / +2
Query: 575 NSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGP 754
N++ H++ + +L+ ++TVT+P +SPNTDGIH+ + I IT++VIG GDDCISI
Sbjct: 17 NAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCISIVS 196
Query: 755 GTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
G+ V G+TCGPGHGISIGSL + + V+++ V L T GVRIK ++
Sbjct: 197 GSHNVQAKGITCGPGHGISIGSL*VHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 361
Score = 77.1 bits (162), Expect(2) = 2e-046
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +2 / +2
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSL 1120
VS I ++NI+M ANPI ID YC S + VK+V +KNI GTS++ A+
Sbjct: 377 VSNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRF 556
Query: 1121 LCTAKVPCTGVTMDDVNVEYSG 1186
C+ PC + + D+N+E +G
Sbjct: 557 DCSKAYPCQRILLQDINLERAG 622
>gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 689
Score = 133 bits (284), Expect(3) = 7e-046
Identities = 55/109 (50%), Positives = 74/109 (67%)
Frame = +2 / -2
Query: 542 NNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVI 721
NN ++ G+ LNS+ FH+ + C+++ ++ V V A GDSPNTDGIH+ S+ + I N+
Sbjct: 328 NNIKIDGLLSLNSQMFHIAINGCQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNSST 149
Query: 722 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVK 868
GDDCISIGPGT + I V CGPGHGISIGSL + DE V ++ VK
Sbjct: 148 KTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNVTVK 2
Score = 60.2 bits (125), Expect(3) = 7e-046
Identities = 23/42 (54%), Positives = 29/42 (69%)
Frame = +2 / -2
Query: 185 NGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTG 310
NGK DST+A +AW +ACG T I IPKG +L+G + FTG
Sbjct: 682 NGKXDSTQAFLDAWTAACGSTDPTMIXIPKGRYLLGSVAFTG 557
Score = 30.9 bits (61), Expect(3) = 7e-046
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2 / -2
Query: 323 DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITG 436
D+TI++DG L+A D NW+ V + I G
Sbjct: 538 DITIRIDGTLIAPEDYRILGLASNWLSFEGVSGVSIVG 425
>gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 695
Score = 125 bits (267), Expect(3) = 3e-045
Identities = 53/106 (50%), Positives = 72/106 (67%)
Frame = +2 / +1
Query: 542 NNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVI 721
NN ++ G+ LNS+ FH+ + +++ ++ V V A GDSPNTDGIH+ S+ + I N+ I
Sbjct: 376 NNIKIDGLLSLNSQMFHIVINGRQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNSSI 555
Query: 722 GVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 859
GDDCISIGPGT + I V CGPGHGISIGSL + DE V ++
Sbjct: 556 KTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNV 693
Score = 65.7 bits (137), Expect(3) = 3e-045
Identities = 26/46 (56%), Positives = 32/46 (69%)
Frame = +2 / +1
Query: 173 GASGNGKTDSTKAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTG 310
GA NGKTDST+A +AW +ACG T I IPKG +L+G + FTG
Sbjct: 10 GARPNGKTDSTQAFLDAWTAACGSTDPTMIYIPKGRYLLGSVAFTG 147
Score = 30.9 bits (61), Expect(3) = 3e-045
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2 / +1
Query: 323 DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITG 436
D+TI++DG L+A D NW+ V + I G
Sbjct: 166 DITIRIDGTLIAPEDYRILGLASNWLSFEGVSGVSIVG 279
>gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 3', mRNA sequence
Length = 768
Score = 94.1 bits (199), Expect(2) = 1e-036
Identities = 39/74 (52%), Positives = 50/74 (67%)
Frame = +2 / -2
Query: 698 ITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCT 877
I IT++VIG GDDCISI G+ V G+TCGPGHGISIGSLG + + V+++ V
Sbjct: 767 IQITDSVIGTGDDCISIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAK 588
Query: 878 LKKTMFGVRIKAYE 919
L T GVRIK ++
Sbjct: 587 LSGTANGVRIKTWQ 546
Score = 80.8 bits (170), Expect(2) = 1e-036
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = +2 / -2
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSL 1120
VS I ++NI+M ANPI ID YC S + VK+V +KNI GTS++ A+
Sbjct: 530 VSNIKFQNIEMNKVANPIIIDQNYCDQDKPCRQQKSALQVKNVVYKNIKGTSASEVAMRF 351
Query: 1121 LCTAKVPCTGVTMDDVNVEYSG 1186
C+ PC G+ + D+N+E +G
Sbjct: 350 DCSKAYPCQGILLQDINLERAG 285
>gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 736
Score = 96.4 bits (204), Expect(2) = 1e-036
Identities = 40/77 (51%), Positives = 51/77 (66%)
Frame = +2 / +2
Query: 689 SSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVK 868
+ I IT++VIG GDDCISI G+ V TG+TCGPGHGISIGSLG + + V+ + V
Sbjct: 14 TQNIQITDSVIGTGDDCISIVSGSHHVQATGITCGPGHGISIGSLGAHDSKDHVSGVTVS 193
Query: 869 DCTLKKTMFGVRIKAYE 919
L T GVRIK ++
Sbjct: 194 GAKLSGTANGVRIKTWQ 244
Score = 78.5 bits (165), Expect(2) = 1e-036
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +2 / +2
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSL 1120
VS I ++NI+M NPI ID YC S + VK+V +KNI GTS++ A+
Sbjct: 260 VSNIKFQNIEMNKVTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSASEVAMRF 439
Query: 1121 LCTAKVPCTGVTMDDVNVEYSG 1186
C+ PC G+ + D+N+E +G
Sbjct: 440 DCSKAYPCQGILLQDINLERAG 505
>gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032F08 5', mRNA sequence
Length = 696
Score = 129 bits (276), Expect(2) = 3e-034
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +2 / +3
Query: 554 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGD 733
V+G+T+ NS H+ C + + D +P +SPNTDGIH+ +S + I ++ + GD
Sbjct: 282 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 461
Query: 734 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKA 913
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T+ GVRIK
Sbjct: 462 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 641
Query: 914 YE 919
++
Sbjct: 642 WQ 647
Score = 37.3 bits (75), Expect(2) = 3e-034
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWS 475
WIE +++ + I GKG +DGQG W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017H09 5', mRNA sequence
Length = 705
Score = 129 bits (276), Expect(3) = 5e-033
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +2 / +3
Query: 554 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGD 733
V+G+T+ NS H+ C + + D +P +SPNTDGIH+ +S + I ++ + GD
Sbjct: 84 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 263
Query: 734 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKA 913
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T+ GVRIK
Sbjct: 264 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 443
Query: 914 YE 919
++
Sbjct: 444 WQ 449
Score = 26.3 bits (51), Expect(3) = 5e-033
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2 / +3
Query: 917 EDAASVLTVSKIHYENIKMEDSANPIFI 1000
++ +S + VS I+Y NIK ++NP+ +
Sbjct: 555 QNKSSAVAVSDINYINIKGTYASNPVHL 638
Score = 24.9 bits (48), Expect(3) = 5e-033
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 1112 VSLLCTAKVPCTGVTMDDVNV 1174
V L C+ +PCTG++ + +
Sbjct: 630 VHLACSDNLPCTGISFSAIEL 692
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 118 bits (253), Expect(2) = 6e-032
Identities = 48/100 (48%), Positives = 73/100 (73%)
Frame = +2 / -2
Query: 620 LIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPG 799
LIK +++++P SPNTDGIH+ ++ + I ++ I GDDCISIG G S V+I G+TCGP
Sbjct: 936 LIKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPS 757
Query: 800 HGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
HGISIGSLG + + V++I V++ +K++ G+RIK ++
Sbjct: 756 HGISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQ 637
Score = 40.0 bits (81), Expect(2) = 6e-032
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2 / -2
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLC 1030
VS I++ENI+ME+ N I ID YC +K C
Sbjct: 621 VSDINFENIQMENVRNCIIIDQYYCLSKAC 532
>gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_M05
3', mRNA sequence
Length = 928
Score = 79.9 bits (168), Expect(2) = 2e-031
Identities = 31/77 (40%), Positives = 50/77 (64%)
Frame = +2 / -3
Query: 944 SKIHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLL 1123
+ I ++NI ME+ +NPI ID YC + AN S V V++++F+ I GTS+T EA+
Sbjct: 713 TNITFQNIFMENVSNPIIIDQYYCDAHVPCANQTSAVKVENISFRRIKGTSATEEAIKFA 534
Query: 1124 CTAKVPCTGVTMDDVNV 1174
C+ +PC G+ ++DV +
Sbjct: 533 CSDDLPCKGLYLEDVQL 483
Score = 77.1 bits (162), Expect(2) = 2e-031
Identities = 32/64 (50%), Positives = 40/64 (62%)
Frame = +2 / -3
Query: 728 GDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRI 907
GDDCISI +S++ I + CGPGHGISIGSLG+ V D+ V L T GVRI
Sbjct: 923 GDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRI 744
Query: 908 KAYE 919
K ++
Sbjct: 743 KTWQ 732
>gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01023H02 5', mRNA sequence
Length = 611
Score = 129 bits (276), Expect(2) = 2e-031
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +2 / +2
Query: 554 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGD 733
V+G+T+ NS H+ C + + D +P +SPNTDGIH+ +S + I ++ + GD
Sbjct: 170 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 349
Query: 734 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKA 913
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T+ GVRIK
Sbjct: 350 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 529
Query: 914 YE 919
++
Sbjct: 530 WQ 535
Score = 27.6 bits (54), Expect(2) = 2e-031
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2 / +2
Query: 413 VDNLVITGKGNLDGQGPAVWS 475
++ + I GKG +DGQG W+
Sbjct: 2 LNGITIQGKGIIDGQGSVWWN 64
>gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032C08 5', mRNA sequence
Length = 698
Score = 116 bits (248), Expect(2) = 2e-030
Identities = 47/112 (41%), Positives = 69/112 (61%)
Frame = +2 / +3
Query: 554 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGD 733
V+G+T+ NS H+ C + + D +P +SPNTDGIH+ +S + I ++ + GD
Sbjct: 282 VTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDLACGD 461
Query: 734 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKT 889
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T
Sbjct: 462 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNT 617
Score = 37.3 bits (75), Expect(2) = 2e-030
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWS 475
WIE +++ + I GKG +DGQG W+
Sbjct: 96 WIEFTKLNGITIQGKGIIDGQGSVWWN 176
>gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 644
Score = 131 bits (281), Expect(2) = 2e-030
Identities = 55/143 (38%), Positives = 87/143 (60%)
Frame = +2 / -1
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P +L +D + +++G+T+ NS+ H + + + DV V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTD 273
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ S+ + + + IG GDDC+SI G+S + + + CGPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMV 93
Query: 851 TDINVKDCTLKKTMFGVRIKAYE 919
T + + L++T G+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
Score = 25.4 bits (49), Expect(2) = 2e-030
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2 / -1
Query: 308 GPCKGDVTIQVDGNLLA 358
GPC + IQ+DG ++A
Sbjct: 644 GPCADRLIIQIDGTIVA 594
>gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 5', mRNA sequence
Length = 802
Score = 129 bits (276), Expect(2) = 2e-029
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +2 / +3
Query: 554 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGD 733
V+G+T+ NS H+ C + + D +P +SPNTDGIH+ +S + I ++ + GD
Sbjct: 27 VTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGD 206
Query: 734 DCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKA 913
DC+SI G S+V I V CGPGHGISIG LGR + V+++ V+D + T+ GVRIK
Sbjct: 207 DCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKT 386
Query: 914 YE 919
++
Sbjct: 387 WQ 392
Score = 24.4 bits (47), Expect(2) = 2e-029
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 1112 VSLLCTAKVPCTGVTMDDVNV 1174
V L C+ +PCTG++ + +
Sbjct: 573 VHLACSDDLPCTGISFSAIEL 635
>gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 527
Score = 128 bits (274), Expect = 1e-028
Identities = 54/143 (37%), Positives = 86/143 (60%)
Frame = +2 / -1
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P +L +D + +++G+T+ NS+ H + + + V V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSHVLVSAPEDSPNTD 273
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ S+ + + + IG GDDC+SI G+S + + + CGPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMV 93
Query: 851 TDINVKDCTLKKTMFGVRIKAYE 919
T + + L++T G+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
>gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 126 bits (270), Expect = 4e-028
Identities = 54/143 (37%), Positives = 86/143 (60%)
Frame = +2 / -2
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P +L +D + +++G+T+ NS+ H + + + DV V+AP DSPNTD
Sbjct: 452 KSNPCRGAPTALTIDSSSAVKINGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTD 273
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDV 850
GIH+ S+ + + + IG GDDC+SI G+S + + + GPG GISIGSLG+ V
Sbjct: 272 GIHITGSTNVVLQDCKIGTGDDCVSIVNGSSNIKMKRIFYGPGRGISIGSLGKDNSTGMV 93
Query: 851 TDINVKDCTLKKTMFGVRIKAYE 919
T + + L++T G+RIK ++
Sbjct: 92 TKVVLDTAFLRETTNGLRIKTWQ 24
>gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 3', mRNA sequence
Length = 934
Score = 116 bits (248), Expect(2) = 2e-025
Identities = 46/104 (44%), Positives = 67/104 (64%)
Frame = +2 / -2
Query: 608 CKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVT 787
C + + D +P +SPNTDGIH+ +S + I ++ + GDDC+SI G S+V I V
Sbjct: 930 CTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNVN 751
Query: 788 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
CGPGHGISIG LGR + V+++ V+D + T+ GVRIK ++
Sbjct: 750 CGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQ 619
Score = 24.4 bits (47), Expect(2) = 2e-025
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2 / -2
Query: 1112 VSLLCTAKVPCTGVTMDDVNV 1174
V L C+ +PCTG++ + +
Sbjct: 438 VHLACSDDLPCTGISFSAIEL 376
>gb|CN517286.1|CN517286 GQ0093.B3_N07 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_N07 5', mRNA sequence
Length = 475
Score = 102 bits (217), Expect(2) = 2e-022
Identities = 41/110 (37%), Positives = 65/110 (59%)
Frame = +2 / +3
Query: 491 KKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTD 670
K C+ P ++ + +V + ++ + H+ C ++ ++ VT+P SPNTD
Sbjct: 108 KTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHVAFTNCLRVMTFNLIVTSPAVSPNTD 287
Query: 671 GIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGS 820
GIH+ S G+ I ++V+ GDDCISI +S++ I + CGPGHGISIGS
Sbjct: 288 GIHISASHGVKIKDSVVRTGDDCISIVSNSSRIKIXXIACGPGHGISIGS 437
Score = 24.4 bits (47), Expect(2) = 2e-022
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2 / +3
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWSKN 481
W+ V +L + G G ++G+G W+++
Sbjct: 9 WLYFHGVKHLTVEGGGTVNGRGWLWWAQS 95
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 67.0 bits (140), Expect(6) = 7e-022
Identities = 27/70 (38%), Positives = 45/70 (64%)
Frame = +2 / +2
Query: 521 SLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGI 700
+L +D ++ +V G+T+ NS+ H + + + I V+V+APGDSPNTDGIH+ S+ +
Sbjct: 98669 ALTIDSSSSVKVKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNV 98848
Query: 701 TITNTVIGVG 730
+ + IG G
Sbjct: 98849 VLQDCKIGTG 98878
Score = 47.3 bits (97), Expect(6) = 7e-022
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2 / +2
Query: 728 GDDCISIGPGTSKVNITGVTCGPGHGISIGSL 823
GDDCISI G+S + + + CGPGHG+ + S+
Sbjct: 99014 GDDCISIVNGSSGIKMKRIYCGPGHGVRLSSI 99109
Score = 34.1 bits (68), Expect(6) = 7e-022
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2 / +1
Query: 941 VSKIHYENIKMEDSANPIFIDMKYCPNKLCTAN 1039
V + +EN++M++ NPI ID YC + N
Sbjct: 99529 VRGVRFENVRMDNVDNPIIIDQFYCDSPASCQN 99627
Score = 32.7 bits (65), Expect(6) = 7e-022
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2 / +3
Query: 206 KAVQEAWASACGGTGKQTILIPKGDFLVGQLNFTGPCKGDVTIQV 340
+A +AW +AC ++ + +LV F GPC+ IQV
Sbjct: 98016 QAFVKAWETACATPESVFLVPSEHHYLVNATRFKGPCEDRFVIQV 98150
Score = 29.5 bits (58), Expect(6) = 7e-022
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +2 / +2
Query: 395 WIEILRVDNLVITGKGNLDGQGPAVWSKN 481
W+E +++ ++ G G +DG G W+ +
Sbjct: 98363 WLEFSKLNGVLFQGNGVIDGSGSKWWASS 98449
Score = 28.1 bits (55), Expect(6) = 7e-022
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2 / +3
Query: 806 ISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAYE 919
+SIGSLG+ V + + + +T GVRIK ++
Sbjct: 99264 LSIGSLGKDNSTGIVAKVVLDTAFISETTNGVRIKTWQ 99377
>gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides
cDNA clone WS0221_J07 3', mRNA sequence
Length = 722
Score = 66.6 bits (139), Expect(2) = 2e-021
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2 / -2
Query: 950 IHYENIKMEDSANPIFIDMKYCPNKLCTANGASKVTVKDVTFKNITGTSSTPEAVSLLCT 1129
I +++ M + NPI ID YCP + S V + DVT+++I G+S+T AV C+
Sbjct: 562 ILFQHAVMTNVQNPIVIDQNYCPGEKGCPGQVSGVKISDVTYQDIHGSSATELAVKFDCS 383
Query: 1130 AKVPCTGVTMDDVNV 1174
PC+G+ ++DV +
Sbjct: 382 KTNPCSGIKLEDVKL 338
Score = 57.0 bits (118), Expect(2) = 2e-021
Identities = 24/43 (55%), Positives = 28/43 (65%)
Frame = +2 / -2
Query: 788 CGPGHGISIGSLGRYKDEKDVTDINVKDCTLKKTMFGVRIKAY 916
CGPGHGISIGSLG+ E V ++ VK T T GVRIK +
Sbjct: 721 CGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVRIKTW 593
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 705,516,220
Number of Sequences: 369679
Number of extensions: 10170453
Number of successful extensions: 55832
Number of sequences better than 1.0e-020: 25
length of database: 67,802,888
effective HSP length: 54
effective length of database: 47,840,222
effective search space used: 23346028336
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)