TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA libra... 144 6e-034
gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Po... 144 6e-034
gb|CX656535.1|CX656535 PO01001H07 Poplar SC cDNA library Po... 144 6e-034
gb|CF230612.1|CF230612 PtaC0010G11G1113 Poplar cDNA library... 143 1e-033
gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus... 143 1e-033
gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Popul... 143 1e-033
gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Popu... 143 1e-033
gb|BU813587.1|BU813587 N012C08 Populus bark cDNA library Po... 140 7e-033
gb|CK317852.1|CK317852 B9P02e12 Populus stem seasonal libra... 140 1e-032
gb|CF119943.1|CF119943 MTU10CS.P8.C10 Aspen stem cDNA Libra... 136 2e-031
gb|DT520594.1|DT520594 WS02447.B21_P22 PTxD-ICC-N-A-14 Popu... 135 3e-031
gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Po... 133 2e-030
gb|DN485537.1|DN485537 N012C08.3pR Populus bark cDNA librar... 106 3e-028
gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal libra... 107 6e-023
gb|CX655762.1|CX655762 PO02039G02 Poplar SC cDNA library Po... 103 1e-021
gb|DN491387.1|DN491387 UM93TE04.3pR Populus female catkins ... 103 1e-021
gb|CV265944.1|CV265944 WS02028.B21_L02 PTxN-IB-N-A-11 Popul... 102 2e-021
gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Popul... 102 2e-021
gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus t... 102 2e-021
gb|CX185954.1|CX185954 A01_45-15_01.ab1 leaf inoculated wit... 102 2e-021
gb|CX657457.1|CX657457 PO02047A11 Poplar SC cDNA library Po... 101 4e-021
gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Popul... 100 7e-021
>gb|CF234614.1|CF234614 PtaJXT0013A12A1202 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 753
Score = 144 bits (309), Expect = 6e-034
Identities = 60/99 (60%), Positives = 73/99 (73%)
Frame = -2 / +1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 247 CQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 426
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG +KVALG H LH+G LKH+L + +*
Sbjct: 427 VDVCKDLSVVDELGGKKVALGEHVLHIGSLKHSLTVXI* 543
>gb|CX655144.1|CX655144 PO02030E02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02030E02 5', mRNA sequence
Length = 586
Score = 144 bits (309), Expect = 6e-034
Identities = 60/99 (60%), Positives = 74/99 (74%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 287 CQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 466
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH+L + +*
Sbjct: 467 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSLTVRI* 583
>gb|CX656535.1|CX656535 PO01001H07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001H07 5', mRNA sequence
Length = 498
Score = 144 bits (309), Expect = 6e-034
Identities = 60/99 (60%), Positives = 74/99 (74%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 66 CQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 245
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH+L + +*
Sbjct: 246 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSLTVRI* 362
>gb|CF230612.1|CF230612 PtaC0010G11G1113 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 674
Score = 143 bits (307), Expect = 1e-033
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV + V FK
Sbjct: 168 CQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFMHAQTDSHVGFK 347
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH+L + +*
Sbjct: 348 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSLTVRI* 464
>gb|CV254318.1|CV254318 WS0224.B21_M22 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0224_M22 3', mRNA sequence
Length = 745
Score = 143 bits (307), Expect = 1e-033
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -2 / -2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 528 CQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 349
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH++ + +*
Sbjct: 348 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI* 232
>gb|DT507195.1|DT507195 WS02417.BR_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 5', mRNA sequence
Length = 783
Score = 143 bits (307), Expect = 1e-033
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 464 CQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 643
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH++ + +*
Sbjct: 644 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI* 760
>gb|DT511843.1|DT511843 WS02417.B21_J18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J18 3', mRNA sequence
Length = 679
Score = 143 bits (307), Expect = 1e-033
Identities = 59/99 (59%), Positives = 74/99 (74%)
Frame = -2 / -2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 432 CQNLTFDVHLRIKNTGTTSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 253
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH++ + +*
Sbjct: 252 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI* 136
>gb|BU813587.1|BU813587 N012C08 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 440
Score = 140 bits (301), Expect = 7e-033
Identities = 61/99 (61%), Positives = 74/99 (74%)
Frame = -2 / +1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ F++ LRV+N G SG TVFLFSSPPAV N+P K L+GFEKVSL V FK
Sbjct: 13 CQNSTFDMLLRVKNGGTISGSHTVFLFSSPPAVHNSPQKHLVGFEKVSLNAQTGRHVRFK 192
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VD+CKDLSVVDELG++KVALG + LHVG LKH L++ +*
Sbjct: 193 VDICKDLSVVDELGSKKVALGEYVLHVGSLKHFLSVRI* 309
>gb|CK317852.1|CK317852 B9P02e12 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 503
Score = 140 bits (300), Expect = 1e-032
Identities = 58/99 (58%), Positives = 73/99 (73%)
Frame = -2 / +1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFL S+PP+V N+P K L+GFEKV L V FK
Sbjct: 64 CQNLTFDVHLRIKNTGTMSGSHTVFLVSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 243
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVALG H LH+G LKH++ + +*
Sbjct: 244 VDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI* 360
>gb|CF119943.1|CF119943 MTU10CS.P8.C10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 513
Score = 136 bits (291), Expect = 2e-031
Identities = 59/99 (59%), Positives = 71/99 (71%)
Frame = -2 / -2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ F++ LRV+N G SG TVFLFSSPPAV N+P K L+ FEKV L V FK
Sbjct: 446 CQNSTFDMLLRVKNGGTISGSHTVFLFSSPPAVHNSPQKHLVAFEKVFLNAQTGRHVRFK 267
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VD+CKDLSVVDELG++KVALG H HVG LKH L++ +*
Sbjct: 266 VDICKDLSVVDELGSKKVALGEHVFHVGSLKHFLSVRI* 150
>gb|DT520594.1|DT520594 WS02447.B21_P22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02447_P22 3', mRNA sequence
Length = 725
Score = 135 bits (289), Expect = 3e-031
Identities = 57/100 (57%), Positives = 72/100 (72%)
Frame = -2 / -2
Query: 705 LCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAF 526
+ G +V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V F
Sbjct: 625 IMSGGGMDVHLRIKNTGTTSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGF 446
Query: 525 KVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
KVDVCKDLSVVDELG++KVALG H LH+G LKH++ + +*
Sbjct: 445 KVDVCKDLSVVDELGSKKVALGEHVLHIGSLKHSMTVRI* 326
>gb|CX654525.1|CX654525 PO02012A06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012A06 5', mRNA sequence
Length = 635
Score = 133 bits (284), Expect = 2e-030
Identities = 56/99 (56%), Positives = 71/99 (71%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG VFL S+PP+V N+P K L+GFEKV + V FK
Sbjct: 305 CQNLTFDVHLRIKNTGTMSGSH*VFLSSTPPSVHNSPQKHLVGFEKVFMHAQTDSHVGFK 484
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVCKDLSVVDELG++KVA G H LH+G LKH+L + +*
Sbjct: 485 VDVCKDLSVVDELGSKKVAWGEHVLHIGSLKHSLTVRI* 601
>gb|DN485537.1|DN485537 N012C08.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N012C08 3', mRNA sequence
Length = 391
Score = 106 bits (227), Expect(2) = 3e-028
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = -2 / -3
Query: 618 SPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGSHTLHVG 439
SPPAV N+P K L+GFEKVSL V FKVD+CKDLSVVDELG++KVALG + LHVG
Sbjct: 272 SPPAVHNSPQKHLVGFEKVSLNAQTGRHVRFKVDICKDLSVVDELGSKKVALGEYVLHVG 93
Query: 438 DLKHTLNLGV* 406
LKH L++ +*
Sbjct: 92 SLKHFLSVRI* 60
Score = 38.2 bits (77), Expect(2) = 3e-028
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -2 / -2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPA 607
C+ F++ LRV+N G SG TVFLFS P+
Sbjct: 357 CQNSTFDMLLRVKNGGTISGSHTVFLFS*SPS 262
>gb|CK319249.1|CK319249 X9P08e11 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 107 bits (229), Expect = 6e-023
Identities = 46/74 (62%), Positives = 54/74 (72%)
Frame = -2 / +2
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ L F+V LR++N G SG TVFLFS+PP+V N+P K L+GFEKV L V FK
Sbjct: 407 CQNLTFDVHLRIKNTGTMSGSHTVFLFSTPPSVHNSPQKHLVGFEKVFLHAQTDSHVGFK 586
Query: 522 VDVCKDLSVVDELG 481
VDVCKDLSVVDELG
Sbjct: 587 VDVCKDLSVVDELG 628
>gb|CX655762.1|CX655762 PO02039G02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02039G02 5', mRNA sequence
Length = 630
Score = 103 bits (220), Expect = 1e-021
Identities = 45/98 (45%), Positives = 59/98 (60%)
Frame = -2 / +1
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE L V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 64 ANCEPLVLGVHIDVKNTGEMDGAHTLLVFSSPPEGKWSTNKKLIGFEKVHLVAGSEKRVK 243
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ +G H LH+GDLKH+++L
Sbjct: 244 IDIPVCKHLSVVDRFGIRRLPIGKHDLHIGDLKHSISL 357
>gb|DN491387.1|DN491387 UM93TE04.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM93TE04 3', mRNA sequence
Length = 699
Score = 103 bits (220), Expect = 1e-021
Identities = 45/98 (45%), Positives = 60/98 (61%)
Frame = -2 / -3
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE LA V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 544 ANCEALALGVHIDVKNTGDMDGTHTLLVFSSPPGGKWSTQKQLIGFEKVHLVTGSQKRVK 365
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ +G H L++GDLKH+++L
Sbjct: 364 IDIHVCKHLSVVDRFGIRRIPIGEHDLYIGDLKHSISL 251
>gb|CV265944.1|CV265944 WS02028.B21_L02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_L02 3', mRNA sequence
Length = 799
Score = 102 bits (218), Expect = 2e-021
Identities = 45/98 (45%), Positives = 60/98 (61%)
Frame = -2 / -2
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE LA V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 600 ANCEALALGVHIDVKNTGDMDGTHTLLVFSSPPGGKWSTQKQLIGFEKVHLVTGSQKRVK 421
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ +G H L++GDLKH+++L
Sbjct: 420 IDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKHSISL 307
>gb|CV266915.1|CV266915 WS02030.B21_F04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_F04 3', mRNA sequence
Length = 941
Score = 102 bits (218), Expect = 2e-021
Identities = 45/98 (45%), Positives = 60/98 (61%)
Frame = -2 / -3
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE LA V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 627 ANCEALALGVHIDVKNTGDMDGTHTLLVFSSPPGGKWSTQKQLIGFEKVHLVTGSQKRVK 448
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ +G H L++GDLKH+++L
Sbjct: 447 IDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKHSISL 334
>gb|CV274592.1|CV274592 WS0173.B21_M08 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_M08 3', mRNA sequence
Length = 815
Score = 102 bits (218), Expect = 2e-021
Identities = 44/98 (44%), Positives = 62/98 (63%)
Frame = -2 / -3
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A C L+F V + V+N G G T+ ++S PPA AP K L+ FEKV + G V
Sbjct: 537 ARCNRLSFGVQVDVKNTGSMDGTHTLLVYSKPPAGHWAPLKQLVAFEKVHVAAGTQQRVG 358
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
V VCK LSVVD G R++ +G+H+LH+GD+KH+++L
Sbjct: 357 IDVHVCKFLSVVDRSGIRRIPMGAHSLHIGDVKHSVSL 244
>gb|CX185954.1|CX185954 A01_45-15_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 605
Score = 102 bits (218), Expect = 2e-021
Identities = 45/98 (45%), Positives = 60/98 (61%)
Frame = -2 / +2
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE LA V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 155 ANCEALALGVHIDVKNTGDMDGTHTLLVFSSPPGGKWSTQKQLIGFEKVHLVTGSQKRVK 334
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ +G H L++GDLKH+++L
Sbjct: 335 IDIHVCKHLSVVDRFGIRRIPIGEHDLYMGDLKHSISL 448
>gb|CX657457.1|CX657457 PO02047A11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02047A11 5', mRNA sequence
Length = 623
Score = 101 bits (216), Expect = 4e-021
Identities = 44/98 (44%), Positives = 58/98 (59%)
Frame = -2 / +1
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE L V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 64 ANCEPLVLGVHIDVKNTGEMDGAHTLLVFSSPPEGKWSTNKKLIGFEKVHLVAGSEKRVK 243
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSV D G R++ +G H LH+GDLKH+++L
Sbjct: 244 IDIPVCKHLSVADRFGIRRLPIGKHDLHIGDLKHSISL 357
>gb|DT504746.1|DT504746 WS01314.B21_I22 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_I22 3', mRNA sequence
Length = 875
Score = 100 bits (214), Expect = 7e-021
Identities = 45/98 (45%), Positives = 59/98 (60%)
Frame = -2 / -3
Query: 708 ALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVA 529
A CE LA V + V+N G G T+ +FSSPP + K L+GFEKV L G V
Sbjct: 600 ANCEALALGVHIDVKNTGDMDGTHTLLVFSSPPGGKWSTQKQLIGFEKVHLVTGSQKRVK 421
Query: 528 FKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNL 415
+ VCK LSVVD G R++ G H L++GDLKH+++L
Sbjct: 420 IDIHVCKHLSVVDRFGIRRIPNGEHYLYIGDLKHSISL 307
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 322,794,630
Number of Sequences: 369679
Number of extensions: 4945297
Number of successful extensions: 110435
Number of sequences better than 1.0e-020: 28
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8987222300
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)