TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594147.2.1
(744 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Popu... 133 6e-048
gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Popul... 133 6e-048
gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Popu... 133 6e-048
gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Popu... 133 6e-048
gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Popul... 133 6e-048
gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Popul... 133 6e-048
gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Popul... 133 6e-048
gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Po... 132 1e-047
gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Popul... 131 2e-039
gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Po... 116 2e-025
gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Po... 114 6e-025
gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Popul... 58 4e-023
gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Po... 107 7e-023
>gb|DT518564.1|DT518564 WS02438.B21_I18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02438_I18 3', mRNA sequence
Length = 905
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -1
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 617 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 438
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 437 GSNPYYFATVVEYEDGDGELKSVELKQ 357
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -1
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 252
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 251 SLESGKTIVASGVIPAGWAPGQTYRS 174
>gb|CV260564.1|CV260564 WS02014.B21_G14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_G14 3', mRNA sequence
Length = 893
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 669 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 490
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 489 GSNPYYFATVVEYEDGDGELKSVELKQ 409
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -3
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 390 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 304
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -3
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 303 SLESGKTIVASGVIPAGWAPGQTYRS 226
>gb|DT512363.1|DT512363 WS02419.B21_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 3', mRNA sequence
Length = 837
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 617 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 438
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 437 GSNPYYFATVVEYEDGDGELKSVELKQ 357
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -2
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 252
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -2
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 251 SLESGKTIVASGVIPAGWAPGQTYRS 174
>gb|DT517819.1|DT517819 WS02435.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_G10 3', mRNA sequence
Length = 831
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -1
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 597 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 418
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 417 GSNPYYFATVVEYEDGDGELKSVELKQ 337
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -1
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 318 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 232
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 231 SLESGKTIVASGVIPAGWAPGQTYRS 154
>gb|CV257933.1|CV257933 WS0248.B21_A20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0248_A20 3', mRNA sequence
Length = 808
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 596 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 417
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 416 GSNPYYFATVVEYEDGDGELKSVELKQ 336
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -3
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 317 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 231
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -3
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 230 SLESGKTIVASGVIPAGWAPGQTYRS 153
>gb|CV258295.1|CV258295 WS0249.B21_B24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_B24 3', mRNA sequence
Length = 741
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -1
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 693 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 514
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 513 GSNPYYFATVVEYEDGDGELKSVELKQ 433
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -1
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 414 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 328
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 327 SLESGKTIVASGVIPAGWAPGQTYRS 250
>gb|CV259723.1|CV259723 WS02012.B21_B17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02012_B17 3', mRNA sequence
Length = 724
Score = 133 bits (285), Expect(3) = 6e-048
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / -2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 621 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 442
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A ++EYED D L SV++ Q
Sbjct: 441 GSNPYYFATVVEYEDGDGELKSVELKQ 361
Score = 58.3 bits (121), Expect(3) = 6e-048
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -2
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 342 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 256
Score = 37.7 bits (76), Expect(3) = 6e-048
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -2
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 255 SLESGKTIVASGVIPAGWAPGQTYRS 178
>gb|CX659519.1|CX659519 PO01031F07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01031F07 5', mRNA sequence
Length = 633
Score = 132 bits (282), Expect(3) = 1e-047
Identities = 51/87 (58%), Positives = 61/87 (70%)
Frame = -1 / +3
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QI++ RV C WPG VTF V+
Sbjct: 57 CPGGPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDS 236
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDMMQ 484
GSNP Y A L+EYED D L SV++ Q
Sbjct: 237 GSNPYYFATLVEYEDGDGDLKSVELKQ 317
Score = 58.8 bits (122), Expect(3) = 1e-047
Identities = 20/36 (55%), Positives = 29/36 (80%)
Frame = -1 / +3
Query: 480 QGGTTGQWVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
Q + WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 315 QALNSDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLT 422
Score = 37.7 bits (76), Expect(3) = 1e-047
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / +3
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 423 SLESGKTIVASGVIPAGWAPGQTYRS 500
>gb|DT507734.1|DT507734 WS02419.BR_B06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02419_B06 5', mRNA sequence
Length = 772
Score = 131 bits (281), Expect(2) = 2e-039
Identities = 50/85 (58%), Positives = 60/85 (70%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QIQ+ RV C WPG VTF V+
Sbjct: 422 CPGSPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDS 601
Query: 564 GSNPNYLAVLIEYEDSDSALDSVDM 490
GSNP Y A ++EYED D L SV++
Sbjct: 602 GSNPYYFATVVEYEDGDGELKSVEL 676
Score = 51.0 bits (105), Expect(2) = 2e-039
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = -1 / +1
Query: 459 WVPMQQSWGAVWKINSGSVLQGP 391
WVPMQ+SWGAVWK+++GS+L+ P
Sbjct: 700 WVPMQKSWGAVWKLDAGSLLRAP 768
>gb|CX657368.1|CX657368 PO02043E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02043E09 5', mRNA sequence
Length = 621
Score = 116 bits (247), Expect = 2e-025
Identities = 44/73 (60%), Positives = 52/73 (71%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QI++ RV C WPG VTF V+
Sbjct: 401 CPGGPCAXESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDS 580
Query: 564 GSNPNYLAVLIEY 526
GSNP Y A L+EY
Sbjct: 581 GSNPYYFATLVEY 619
>gb|CX654042.1|CX654042 PO02012B10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02012B10 5', mRNA sequence
Length = 639
Score = 114 bits (244), Expect = 6e-025
Identities = 44/77 (57%), Positives = 53/77 (68%)
Frame = -1 / +2
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QI++ RV C WPG VTF V+
Sbjct: 401 CPGGPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKKVTFHVDS 580
Query: 564 GSNPNYLAVLIEYEDSD 514
GSNP Y A L+E + D
Sbjct: 581 GSNPYYFATLVE*QHGD 631
>gb|CV259500.1|CV259500 WS02011.B21_I10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_I10 3', mRNA sequence
Length = 458
Score = 58.3 bits (121), Expect(3) = 4e-023
Identities = 19/29 (65%), Positives = 27/29 (93%)
Frame = -1 / -1
Query: 459 WVPMQQSWGAVWKINSGSVLQGPFNIRLT 373
WVPMQ+SWGAVWK+++GS+L+ P +I+LT
Sbjct: 338 WVPMQKSWGAVWKLDAGSLLRAPLSIKLT 252
Score = 49.6 bits (102), Expect(3) = 4e-023
Identities = 19/34 (55%), Positives = 24/34 (70%)
Frame = -1 / -1
Query: 585 VTFSVEPGSNPNYLAVLIEYEDSDSALDSVDMMQ 484
VTF V+ GSNP Y A ++EYED D L SV++ Q
Sbjct: 458 VTFHVDSGSNPYYFATVVEYEDGDGELKSVELKQ 357
Score = 37.7 bits (76), Expect(3) = 4e-023
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 375 TFSSGRALVASNAIPAGWNAGVAYRS 298
+ SG+ +VAS IPAGW G YRS
Sbjct: 251 SLESGKTIVASGVIPAGWAPGQTYRS 174
>gb|CX654872.1|CX654872 PO02060H08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060H08 5', mRNA sequence
Length = 581
Score = 107 bits (229), Expect = 7e-023
Identities = 41/68 (60%), Positives = 48/68 (70%)
Frame = -1 / +1
Query: 744 CPDCPCPDEQVHFDMSGTAFGALAKPGQESQLRGAGAIQIQYTRVQCEWPGVDVTFSVEP 565
CP PC E HFD+SGTAFGA+A G+E QLR AG +QI++ RV C WPG VTF V+
Sbjct: 373 CPGGPCAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIEHQRVPCNWPGKTVTFHVDS 552
Query: 564 GSNPNYLA 541
GSNP Y A
Sbjct: 553 GSNPYYFA 576
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 346,190,088
Number of Sequences: 369679
Number of extensions: 4606981
Number of successful extensions: 47846
Number of sequences better than 1.0e-020: 14
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9473018100
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)