TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2550809.2.1
(876 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT474284.1|DT474284 WS01231.BR_G21 PT-GT-FL-A-3 Populus ... 176 8e-057
gb|DT486350.1|DT486350 WS02530.B21_L22 PT-MB-N-A-15 Populus... 176 8e-057
gb|DT481048.1|DT481048 WS02530.BR_L22 PT-MB-N-A-15 Populus ... 176 8e-057
gb|DT476950.1|DT476950 WS01231.B21_G21 PT-GT-FL-A-3 Populus... 176 8e-057
gb|DT518061.1|DT518061 WS02436.B21_B10 PTxD-ICC-N-A-14 Popu... 175 3e-056
gb|DT510915.1|DT510915 WS02429.BR_A19 PTxD-ICC-N-A-14 Popul... 175 3e-056
gb|DT515614.1|DT515614 WS02429.B21.1_A19 PTxD-ICC-N-A-14 Po... 175 3e-056
gb|CV259645.1|CV259645 WS02011.B21_O11 PTxN-IB-N-A-11 Popul... 167 3e-054
gb|DT508286.1|DT508286 WS02420.BR_I24 PTxD-ICC-N-A-14 Popul... 155 2e-050
gb|DT512899.1|DT512899 WS02420.B21_I24 PTxD-ICC-N-A-14 Popu... 155 2e-050
gb|CX182936.1|CX182936 G02_45-121_14.ab1 leaf inoculated wi... 174 2e-046
gb|AJ777692.1|AJ777692 AJ777692 Populus euphratica root 3-6... 177 9e-044
gb|BU815657.1|BU815657 N044F03 Populus bark cDNA library Po... 177 1e-043
gb|CK099054.1|CK099054 A050P02.5pR Hybrid aspen plasmid lib... 122 3e-041
gb|CK088358.1|CK088358 A050P02.3pR Hybrid aspen plasmid lib... 122 1e-040
gb|DT490122.1|DT490122 WS02544.B21_B13 PT-MB-N-A-15 Populus... 151 4e-038
gb|AI163855.1|AI163855 A050p02u Hybrid aspen plasmid librar... 108 7e-037
gb|BU825907.1|BU825907 UK114TE03 Populus apical shoot cDNA ... 153 1e-036
gb|BU836102.1|BU836102 T082F12 Populus apical shoot cDNA li... 117 4e-034
gb|CV245687.1|CV245687 WS0259.B21_B19 PT-MB-N-A-15 Populus ... 136 1e-033
gb|DT523831.1|DT523831 WS02040.B21_M04 PTxN-IB-N-A-11 Popul... 91 4e-031
gb|BU825746.1|BU825746 UK112TD12 Populus apical shoot cDNA ... 129 2e-029
gb|BU832676.1|BU832676 T037A03 Populus apical shoot cDNA li... 71 2e-025
gb|BU836664.1|BU836664 T089D05 Populus apical shoot cDNA li... 65 1e-023
gb|BU875386.1|BU875386 V006D01 Populus flower cDNA library ... 109 3e-023
gb|BI130064.1|BI130064 G101P89Y Populus cambium cDNA librar... 107 1e-022
>gb|DT474284.1|DT474284 WS01231.BR_G21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_G21 5', mRNA sequence
Length = 936
Score = 176 bits (378), Expect(2) = 8e-057
Identities = 69/134 (51%), Positives = 102/134 (76%)
Frame = -1 / +1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL D +RA+K+ GYY+AV+ L++I E
Sbjct: 136 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 315
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +
Sbjct: 316 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 495
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 496 YRYVPGENPVFLND 537
Score = 65.2 bits (136), Expect(2) = 8e-057
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 544 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 675
>gb|DT486350.1|DT486350 WS02530.B21_L22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_L22 3', mRNA sequence
Length = 923
Score = 176 bits (378), Expect(2) = 8e-057
Identities = 69/134 (51%), Positives = 102/134 (76%)
Frame = -1 / -3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL D +RA+K+ GYY+AV+ L++I E
Sbjct: 795 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 616
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +
Sbjct: 615 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 436
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 435 YRYVPGENPVFLND 394
Score = 65.2 bits (136), Expect(2) = 8e-057
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / -3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 387 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 256
>gb|DT481048.1|DT481048 WS02530.BR_L22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_L22 5', mRNA sequence
Length = 921
Score = 176 bits (378), Expect(2) = 8e-057
Identities = 69/134 (51%), Positives = 102/134 (76%)
Frame = -1 / +1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL D +RA+K+ GYY+AV+ L++I E
Sbjct: 130 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 309
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +
Sbjct: 310 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 489
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 490 YRYVPGENPVFLND 531
Score = 65.2 bits (136), Expect(2) = 8e-057
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 538 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 669
>gb|DT476950.1|DT476950 WS01231.B21_G21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_G21 3', mRNA sequence
Length = 905
Score = 176 bits (378), Expect(2) = 8e-057
Identities = 69/134 (51%), Positives = 102/134 (76%)
Frame = -1 / -2
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL D +RA+K+ GYY+AV+ L++I E
Sbjct: 805 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGE 626
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +
Sbjct: 625 GKVRQHTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 446
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 445 YRYVPGENPVFLND 404
Score = 65.2 bits (136), Expect(2) = 8e-057
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 397 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 266
>gb|DT518061.1|DT518061 WS02436.B21_B10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_B10 3', mRNA sequence
Length = 863
Score = 175 bits (376), Expect(2) = 3e-056
Identities = 69/137 (50%), Positives = 104/137 (75%)
Frame = -1 / -2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++
Sbjct: 760 SKKMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLES 581
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L+
Sbjct: 580 IGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMK 401
Query: 426 MSNYKYIGGENAMFMND 376
M +Y+Y+ GEN +F+ND
Sbjct: 400 MPDYRYVPGENPVFLND 350
Score = 64.3 bits (134), Expect(2) = 3e-056
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 343 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 227
>gb|DT510915.1|DT510915 WS02429.BR_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_A19 5', mRNA sequence
Length = 843
Score = 175 bits (376), Expect(2) = 3e-056
Identities = 69/137 (50%), Positives = 104/137 (75%)
Frame = -1 / +3
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++
Sbjct: 99 SKKMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLES 278
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L+
Sbjct: 279 IGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMK 458
Query: 426 MSNYKYIGGENAMFMND 376
M +Y+Y+ GEN +F+ND
Sbjct: 459 MPDYRYVPGENPVFLND 509
Score = 64.3 bits (134), Expect(2) = 3e-056
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / +3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 516 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 632
>gb|DT515614.1|DT515614 WS02429.B21.1_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_A19 3', mRNA sequence
Length = 800
Score = 175 bits (376), Expect(2) = 3e-056
Identities = 69/137 (50%), Positives = 104/137 (75%)
Frame = -1 / -2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++
Sbjct: 772 SKKMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLES 593
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L+
Sbjct: 592 IGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMK 413
Query: 426 MSNYKYIGGENAMFMND 376
M +Y+Y+ GEN +F+ND
Sbjct: 412 MPDYRYVPGENPVFLND 362
Score = 64.3 bits (134), Expect(2) = 3e-056
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 355 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 239
>gb|CV259645.1|CV259645 WS02011.B21_O11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_O11 3', mRNA sequence
Length = 773
Score = 167 bits (359), Expect(2) = 3e-054
Identities = 66/126 (52%), Positives = 95/126 (75%)
Frame = -1 / -1
Query: 753 WNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTG 574
WNV+I D KGL+L+++I+V LL D +RA+K+ GYY+AV+ L++I EGKVR+ TG
Sbjct: 773 WNVIIPAENWDAKGLMLQRSIVVCLLADFAKKRATKDLGYYLAVSTLESIGEGKVRQQTG 594
Query: 573 DVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGEN 394
DVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GEN
Sbjct: 593 DVLFPVVFSGITFKIFKGEILEGAVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGEN 414
Query: 393 AMFMND 376
+F+ND
Sbjct: 413 PVFLND 396
Score = 65.2 bits (136), Expect(2) = 3e-054
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / -1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 389 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 258
>gb|DT508286.1|DT508286 WS02420.BR_I24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I24 5', mRNA sequence
Length = 641
Score = 155 bits (334), Expect(2) = 2e-050
Identities = 62/117 (52%), Positives = 92/117 (78%)
Frame = -1 / +2
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFT 547
LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++I EGKVR+ TGDVLFPV F+
Sbjct: 8 LDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFS 187
Query: 546 CITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
IT K +GE++ G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GEN +F+ND
Sbjct: 188 GITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPDYRYVPGENPVFLND 358
Score = 64.3 bits (134), Expect(2) = 2e-050
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / +2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 365 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 481
>gb|DT512899.1|DT512899 WS02420.B21_I24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_I24 3', mRNA sequence
Length = 641
Score = 155 bits (334), Expect(2) = 2e-050
Identities = 62/117 (52%), Positives = 92/117 (78%)
Frame = -1 / -2
Query: 726 LDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFT 547
LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++I EGKVR+ TGDVLFPV F+
Sbjct: 634 LDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFS 455
Query: 546 CITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
IT K +GE++ G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GEN +F+ND
Sbjct: 454 GITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMKMPDYRYVPGENPVFLND 284
Score = 64.3 bits (134), Expect(2) = 2e-050
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 277 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 161
>gb|CX182936.1|CX182936 G02_45-121_14.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 705
Score = 174 bits (374), Expect(3) = 2e-046
Identities = 68/134 (50%), Positives = 101/134 (75%)
Frame = -1 / +1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL D + A+K+ GYY+AV+ L++I E
Sbjct: 178 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLADFAKKHATKDLGYYLAVSTLESIGE 357
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+E+I+L+ M +
Sbjct: 358 GKVRQQTGDVLFPVVFSGITFKIFKGEILEGVVHKVLKHGVLLRCGPIENIYLSSMKMLD 537
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 538 YRYVPGENPVFLND 579
Score = 27.6 bits (54), Expect(3) = 2e-046
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLG 328
SK+EKD VRF VLG
Sbjct: 586 SKIEKDVVVRFVVLG 630
Score = 23.1 bits (44), Expect(3) = 2e-046
Identities = 6/11 (54%), Positives = 11/11 (100%)
Frame = -1 / +3
Query: 324 RWMEADRQFQL 292
+W+EA+R+F+L
Sbjct: 633 KWLEAEREFRL 665
>gb|AJ777692.1|AJ777692 AJ777692 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400033G04F1, mRNA sequence
Length = 555
Score = 177 bits (381), Expect = 9e-044
Identities = 68/134 (50%), Positives = 103/134 (76%)
Frame = -1 / +3
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++I E
Sbjct: 138 MFLKVQLPWNVIIPAENLDAKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLESIGE 317
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
GKVR+ TGDVLFPV F+ IT K KGE++ G V ++LKHGV L+ GP+++I+L+ M +
Sbjct: 318 GKVRQQTGDVLFPVVFSSITFKIFKGEILEGVVHKVLKHGVLLRCGPIDNIYLSSMKMLD 497
Query: 417 YKYIGGENAMFMND 376
Y+Y+ GEN +F+ND
Sbjct: 498 YRYVPGENPVFLND 539
>gb|BU815657.1|BU815657 N044F03 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 639
Score = 177 bits (380), Expect = 1e-043
Identities = 69/137 (50%), Positives = 105/137 (76%)
Frame = -1 / +2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+VRLL+D +RA+K+ GYY+AV+ L++
Sbjct: 206 SKRMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLES 385
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKS 427
I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L+
Sbjct: 386 IGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCMK 565
Query: 426 MSNYKYIGGENAMFMND 376
M +Y+Y+ GEN +F+N+
Sbjct: 566 MPDYRYVPGENPVFLNE 616
>gb|CK099054.1|CK099054 A050P02.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A050P02 5', mRNA sequence
Length = 602
Score = 122 bits (262), Expect(2) = 3e-041
Identities = 48/91 (52%), Positives = 71/91 (78%)
Frame = -1 / +2
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
K+ GYY+AV+ L++I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L
Sbjct: 5 KDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLL 184
Query: 468 KSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
+ GP+E+I+L+ M +Y+Y+ GEN +F+N+
Sbjct: 185 RCGPIENIYLSCMKMPDYRYVPGENPVFLNE 277
Score = 66.1 bits (138), Expect(2) = 3e-041
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = -1 / +2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TASTGQTG 229
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ ST +G
Sbjct: 284 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*RSTMHSG 427
>gb|CK088358.1|CK088358 A050P02.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A050P02 3', mRNA sequence
Length = 679
Score = 122 bits (262), Expect(2) = 1e-040
Identities = 48/91 (52%), Positives = 71/91 (78%)
Frame = -1 / -2
Query: 648 KEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFL 469
K+ GYY+AV+ L++I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L
Sbjct: 678 KDLGYYLAVSTLESIGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLL 499
Query: 468 KSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
+ GP+E+I+L+ M +Y+Y+ GEN +F+N+
Sbjct: 498 RCGPIENIYLSCMKMPDYRYVPGENPVFLNE 406
Score = 64.3 bits (134), Expect(2) = 1e-040
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 399 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 283
>gb|DT490122.1|DT490122 WS02544.B21_B13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_B13 3', mRNA sequence
Length = 845
Score = 151 bits (324), Expect(2) = 4e-038
Identities = 63/134 (47%), Positives = 90/134 (67%)
Frame = -1 / -2
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+F E E+ V I LDR GL+ +++I+ LL+D+ +ASK+HGY++AV LK+I +
Sbjct: 691 MFGEVEVCSTVRIIAENLDRNGLVPQRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIGK 512
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSN 418
G+V +GDVLF V F C T PMKGE++ G V R +HGV L+ GPV+ IFL+ + M N
Sbjct: 511 GEVVNKSGDVLFHVEFKCRTFMPMKGEILQGVVHRTFRHGVLLRCGPVKYIFLSARKMPN 332
Query: 417 YKYIGGENAMFMND 376
Y+Y EN +F+ND
Sbjct: 331 YQYTSEENPVFLND 290
Score = 27.2 bits (53), Expect(2) = 4e-038
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1 / -2
Query: 372 SKLEKDTAVRFKVLGFRWME 313
+++E + VRF VL RW+E
Sbjct: 283 ARIENNVLVRFSVLDVRWIE 224
>gb|AI163855.1|AI163855 A050p02u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 464
Score = 108 bits (230), Expect(2) = 7e-037
Identities = 42/86 (48%), Positives = 64/86 (74%)
Frame = -1 / +2
Query: 633 YIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPV 454
Y+A + L++I GK R+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+
Sbjct: 2 YLAASTLESIXXGKXRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPI 181
Query: 453 ESIFLAEKSMSNYKYIGGENAMFMND 376
E+I+L+ M +Y+Y+ GEN +F+N+
Sbjct: 182 ENIYLSCMKMPDYRYVPGENPVFLNE 259
Score = 66.1 bits (138), Expect(2) = 7e-037
Identities = 26/48 (54%), Positives = 36/48 (75%)
Frame = -1 / +2
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TASTGQTG 229
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ ST +G
Sbjct: 266 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*RSTMHSG 409
>gb|BU825907.1|BU825907 UK114TE03 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 549
Score = 153 bits (329), Expect = 1e-036
Identities = 61/116 (52%), Positives = 90/116 (77%)
Frame = -1 / +2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+VRLL+D +RA+K+ GYY+AV+ L++
Sbjct: 200 SKRMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLES 379
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFL 439
I EGKVR+ TGDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L
Sbjct: 380 IGEGKVRQHTGDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYL 547
>gb|BU836102.1|BU836102 T082F12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 661
Score = 117 bits (251), Expect(2) = 4e-034
Identities = 51/103 (49%), Positives = 72/103 (69%)
Frame = -1 / +2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+VRLL+D +RA+K+ GYY+AV+ L++
Sbjct: 77 SKRMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLES 256
Query: 606 ISEGKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHG 478
I EGKVR+ TGDVLFPV F+ IT K + G G R L G
Sbjct: 257 IGEGKVRQHTGDVLFPVVFSGITFKILGGRS*TGLFTRCLSMG 385
Score = 49.6 bits (102), Expect(2) = 4e-034
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = -1 / +1
Query: 342 FKVLGFRWMEADRQFQLLATIAGDFLGPL*TASTGQTG 229
F VLG +W+EA+R+FQ L ++ GD+LGP+ ST +G
Sbjct: 526 FVVLGTKWLEAEREFQALVSLEGDYLGPVS*RSTMHSG 639
>gb|CV245687.1|CV245687 WS0259.B21_B19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0259_B19 3', mRNA sequence
Length = 737
Score = 136 bits (292), Expect(2) = 1e-033
Identities = 54/109 (49%), Positives = 77/109 (70%)
Frame = -1 / -1
Query: 702 RKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISEGKVRELTGDVLFPVSFTCITQKPMK 523
R++I+ LL+D+ +ASK+HGY++AV LK+I +G+V +GDVLF V F C T PMK
Sbjct: 644 RRSIVTHLLKDLLSMKASKDHGYFLAVTNLKSIGKGEVVNKSGDVLFHVEFKCRTFMPMK 465
Query: 522 GEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
GE++ G V R +HGV L+ GPV+ IFL+ + M NY+Y EN +F+ND
Sbjct: 464 GEILQGVVHRTFRHGVLLRCGPVKYIFLSARKMPNYQYTSEENPVFLND 318
Score = 27.2 bits (53), Expect(2) = 1e-033
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1 / -1
Query: 372 SKLEKDTAVRFKVLGFRWME 313
+++E + VRF VL RW+E
Sbjct: 311 ARIENNVLVRFSVLDVRWIE 252
>gb|DT523831.1|DT523831 WS02040.B21_M04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02040_M04 3', mRNA sequence
Length = 528
Score = 90.9 bits (192), Expect(2) = 4e-031
Identities = 35/67 (52%), Positives = 51/67 (76%)
Frame = -1 / -1
Query: 576 GDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGE 397
GDVLFPV F+ IT K +GE++ G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GE
Sbjct: 528 GDVLFPVVFSGITFKIFRGEILDGIVHKVLKHGVLLRCGPIENIYLSCVKMPDYRYVPGE 349
Query: 396 NAMFMND 376
N +F+ND
Sbjct: 348 NPVFLND 328
Score = 64.3 bits (134), Expect(2) = 4e-031
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = -1 / -1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL 256
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+
Sbjct: 321 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPV 205
>gb|BU825746.1|BU825746 UK112TD12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 448
Score = 129 bits (277), Expect = 2e-029
Identities = 52/101 (51%), Positives = 77/101 (76%)
Frame = -1 / +1
Query: 777 VFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKAISE 598
+FL+ ++ WNV+I LD KGL+L+++I+V LL+D +RA+K+ GYY+AV+ L++I E
Sbjct: 142 MFLKVQLPWNVIIPAENLDTKGLMLQRSIVVCLLDDFAKKRATKDLGYYLAVSTLESIGE 321
Query: 597 GKVRELTGDVLFPVSFTCITQKPMKGEVMVGHVDRILKHGV 475
GKVR+ GDVLFPV F+ IT K KGE++ G V ++L+HGV
Sbjct: 322 GKVRQQKGDVLFPVVFSGITFKIFKGEILEGAVHKVLQHGV 444
>gb|BU832676.1|BU832676 T037A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 522
Score = 71.2 bits (149), Expect(2) = 2e-025
Identities = 24/49 (48%), Positives = 38/49 (77%)
Frame = -1 / +3
Query: 522 GEVMVGHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
GE++ G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GEN +F+ND
Sbjct: 3 GEILEGAVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGENPVFLND 149
Score = 65.2 bits (136), Expect(2) = 2e-025
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +3
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 156 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 287
>gb|BU836664.1|BU836664 T089D05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 507
Score = 65.2 bits (136), Expect(2) = 1e-023
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 372 SKLEKDTAVRFKVLGFRWMEADRQFQLLATIAGDFLGPL*TAST 241
SK+EKD VRF VLG +W+EA+R+FQ L ++ GD+LGP+ +ST
Sbjct: 139 SKIEKDVVVRFVVLGTKWLEAEREFQALVSLEGDYLGPVS*SST 270
Score = 64.8 bits (135), Expect(2) = 1e-023
Identities = 22/44 (50%), Positives = 34/44 (77%)
Frame = -1 / +1
Query: 507 GHVDRILKHGVFLKSGPVESIFLAEKSMSNYKYIGGENAMFMND 376
G V ++LKHGV L+ GP+E+I+L+ M +Y+Y+ GEN +F+ND
Sbjct: 1 GAVHKVLKHGVLLRCGPIENIYLSSMKMLDYRYVPGENPVFLND 132
>gb|BU875386.1|BU875386 V006D01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 377
Score = 109 bits (232), Expect = 3e-023
Identities = 45/85 (52%), Positives = 65/85 (76%)
Frame = -1 / +2
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD GL+L+++I+VRLL+D +RA+K+ GYY+AV+ L++
Sbjct: 122 SKKMFLKVQLPWNVIIPAENLDA*GLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLES 301
Query: 606 ISEGKVRELTGDVLFPVSFTCITQK 532
I EGKVR+ TGDVLFPV F+ IT K
Sbjct: 302 IGEGKVRQHTGDVLFPVVFSGITFK 376
>gb|BI130064.1|BI130064 G101P89Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 421
Score = 107 bits (228), Expect = 1e-022
Identities = 42/77 (54%), Positives = 61/77 (79%)
Frame = -1 / +1
Query: 786 SAMVFLEAEMSWNVLISPSQLDRKGLLLRKAIIVRLLEDVTHRRASKEHGYYIAVNQLKA 607
S +FL+ ++ WNV+I LD KGL+L+++I+VRLL+D +RA+K+ GYY+AV+ L++
Sbjct: 187 SKRMFLKVQLPWNVIIPAENLDAKGLMLQRSIVVRLLDDFAKKRATKDLGYYLAVSTLES 366
Query: 606 ISEGKVRELTGDVLFPV 556
I EGKVR+ TGDVLFPV
Sbjct: 367 IGEGKVRQHTGDVLFPV 417
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 441,623,991
Number of Sequences: 369679
Number of extensions: 6705914
Number of successful extensions: 42814
Number of sequences better than 1.0e-020: 28
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 11610519620
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)