TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.4
(760 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus... 325 2e-088
gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Popu... 325 2e-088
gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus tricho... 323 7e-088
gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichoca... 233 1e-060
gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichoca... 232 3e-060
gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Popul... 195 7e-054
gb|BU836172.1|BU836172 T083E02 Populus apical shoot cDNA li... 167 1e-041
gb|DN492268.1|DN492268 V059F02.3pR Populus male catkins cDN... 161 4e-039
gb|BU879394.1|BU879394 V059F02 Populus flower cDNA library ... 143 1e-033
gb|CX176039.1|CX176039 A12_69-61_02.ab1 leaf inoculated wit... 100 2e-031
gb|DN502211.1|DN502211 V059F02.5pR Populus male catkins cDN... 65 6e-025
gb|CN523227.1|CN523227 GQ015M01.B3_J05 GQ015 Populus tricho... 104 3e-024
gb|CV228042.1|CV228042 WS0168.B21_O22 PT-DX-A-7 Populus tri... 105 5e-022
>gb|CV274873.1|CV274873 WS0174.B21.1_K13 PTxD-NR-A-8 Populus trichocarpa x Populus
deltoides cDNA clone WS0174_K13 3', mRNA sequence
Length = 885
Score = 325 bits (704), Expect = 2e-088
Identities = 133/188 (70%), Positives = 154/188 (81%)
Frame = -3 / -1
Query: 752 ETEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDEL 573
ETEKLHAQ+GRYK PDEHPFF DLPEP LPP+QYP+VLHPIADSININK +W MYF EL
Sbjct: 882 ETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPIADSININKTVWDMYFREL 703
Query: 572 LPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQ 393
+PRLVKEG DGN GS+A+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI AQD +
Sbjct: 702 IPRLVKEGDDGNCGSTAVCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRAQDSKR 523
Query: 392 LMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPL 213
LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPL
Sbjct: 522 LMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGEWIMPL 343
Query: 212 TKEVQIAY 189
TKEVQ+ Y
Sbjct: 342 TKEVQVQY 319
Score = 254 bits (549), Expect = 5e-067
Identities = 122/194 (62%), Positives = 138/194 (71%)
Frame = +1 / +2
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 302 SNLLSKY*T*TSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 481
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALD 531
A ST YVR +S S A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+D
Sbjct: 482 TASSTAGYVRISISLLLSCALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVD 661
Query: 532 PALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSG 711
P LPS PS TNLG SS KY+ L I IESAMGC T GYC GGN GSG+S KKGCSSG
Sbjct: 662 PQLPSSPSLTNLGISSLKYMSHTVLFIFIESAMGCSTCGYCKGGNTGSGKSSGKKGCSSG 841
Query: 712 PLYLPTCAWSFSVS 753
LYLP+ A SFSVS
Sbjct: 842 LLYLPS*ACSFSVS 883
Score = 126 bits (270), Expect = 1e-028
Identities = 69/194 (35%), Positives = 95/194 (48%)
Frame = +3 / +1
Query: 171 IQPPKQIRDLNLFG*RHDSVAVQLGDQARNDLVHRWAAVVLHTDVHLLPEDLGFGLHPVF 350
IQP Q+ +LNL RHD + + +Q + VH +++ H LP+ F L+ +F
Sbjct: 301 IQPS*QVLNLNLLCQRHDPFTI*ISNQGWSYFVHWVSSIYFSFHRHFLPKSFSFHLNSLF 480
Query: 351 DSTLHRFICEKVHELITVLGYYGWRVSFRGLLKLGLCHKLPIVDPSGECLQAGCVXXXXX 530
+ ++C+ H+ VL G + K LC+K I+D E L CV
Sbjct: 481 HRLFNCWVCQNFHQSFAVLCSNGSLIIIWRSPKFSLCYKFSIMDSF*ESL*TDCVTNSC* 660
Query: 531 XXXXXXXFFHQSWKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIW 710
FF QS KF KIH P + I ISNGM WVL WQ LR ++ ++R+ I
Sbjct: 661 STIAIISFFDQSRNKFSKIHVPYCLIYIY*ISNGM*YLWVLQGWQHRLR*VIREKRMFIR 840
Query: 711 ALVSPNLCMELFSF 752
ALVS L M LFSF
Sbjct: 841 ALVSAKLSM*LFSF 882
Score = 117 bits (250), Expect(2) = 4e-030
Identities = 61/127 (48%), Positives = 75/127 (59%)
Frame = -2 / -3
Query: 753 GN*KAPCTGWEIQGPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLENVF**T 574
GN*KA C+ W+IQ P * F *A VAT A+P G SHC*F +Y+ + +VF* T
Sbjct: 883 GN*KATCSAWQIQEP**TSFFP**LT*AGVATLAVPTGTTSHC*FNKYK*DSMGHVF*RT 704
Query: 573 SSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVSRVP*SLHASHNSPRP*S 394
S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S L H S R
Sbjct: 703 YS*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*ISGFSR*L*GCH*STRQQK 524
Query: 393 THEPSHI 373
T S I
Sbjct: 523 TDGNSDI 503
Score = 97.3 bits (206), Expect(2) = 6e-021
Identities = 52/112 (46%), Positives = 65/112 (58%)
Frame = -1 / -2
Query: 751 KLKSSMHRLGDTRAQMSTLSFPRICLSPGCHLCNTQGFCIPLLILSISTKRFGKCILMNF 572
KLKS M L DTRA M+ L LS CH C+T + IPLLI I +++G CIL N
Sbjct: 881 KLKSYMLSLADTRALMNILFSLMTYLSRCCHPCSTHRYYIPLLIQ*I*IRQYGTCILENL 702
Query: 571 FQDW*KKEVMVMLDPVLFVTQPACRHSPEGSTMGSLWQRPSFKSPLKLTRQP 416
F DW KKE+M ++D LFVTQ R S + S M +L QR +F + R P
Sbjct: 701 FLDWSKKEMMAIVDQQLFVTQSVYRLSQKESIMENL*QRLNFGLLQMIMRLP 546
Score = 34.1 bits (68), Expect(2) = 4e-030
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1 / -2
Query: 274 RCTRSFRAWSPSCTATESCR*PKRFKSRICLGGWIE 167
+CT+ + W SCR* +RFK C GWI+
Sbjct: 404 QCTKYDQPWLLIYMVNGSCR*QRRFKFSTC*EGWIK 297
Score = 25.8 bits (50), Expect(2) = 6e-021
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2 / -3
Query: 270 VQDRSELGRRAVQLQNHAANQRGSNRVFA*EAGLSMFM 157
VQ+ + G + +HAA++ GS+ V A + GLS M
Sbjct: 400 VQNTTNPGC*FIW*MDHAADKGGSSSVLAKKVGLSFAM 287
>gb|DT520673.1|DT520673 WS02448.B21_D13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_D13 3', mRNA sequence
Length = 897
Score = 325 bits (704), Expect = 2e-088
Identities = 133/188 (70%), Positives = 154/188 (81%)
Frame = -3 / -1
Query: 752 ETEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDEL 573
ETEKLHAQ+GRYK PDEHPFF DLPEP LPP+QYP+VLHPIADSININK +W MYF EL
Sbjct: 801 ETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPIADSININKTVWDMYFREL 622
Query: 572 LPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQ 393
+PRLVKEG DGN GS+A+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI AQD +
Sbjct: 621 IPRLVKEGDDGNCGSTAVCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRAQDSKR 442
Query: 392 LMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPL 213
LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPL
Sbjct: 441 LMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGEWIMPL 262
Query: 212 TKEVQIAY 189
TKEVQ+ Y
Sbjct: 261 TKEVQVQY 238
Score = 254 bits (549), Expect = 5e-067
Identities = 122/194 (62%), Positives = 138/194 (71%)
Frame = +1 / +2
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 221 SNLLSKY*T*TSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 400
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALD 531
A ST YVR +S S A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+D
Sbjct: 401 TASSTAGYVRISISLLLSCALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVD 580
Query: 532 PALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSG 711
P LPS PS TNLG SS KY+ L I IESAMGC T GYC GGN GSG+S KKGCSSG
Sbjct: 581 PQLPSSPSLTNLGISSLKYMSHTVLFIFIESAMGCSTCGYCKGGNTGSGKSSGKKGCSSG 760
Query: 712 PLYLPTCAWSFSVS 753
LYLP+ A SFSVS
Sbjct: 761 LLYLPS*ACSFSVS 802
Score = 126 bits (270), Expect = 1e-028
Identities = 69/194 (35%), Positives = 95/194 (48%)
Frame = +3 / +1
Query: 171 IQPPKQIRDLNLFG*RHDSVAVQLGDQARNDLVHRWAAVVLHTDVHLLPEDLGFGLHPVF 350
IQP Q+ +LNL RHD + + +Q + VH +++ H LP+ F L+ +F
Sbjct: 220 IQPS*QVLNLNLLCQRHDPFTI*ISNQGWSYFVHWVSSIYFSFHRHFLPKSFSFHLNSLF 399
Query: 351 DSTLHRFICEKVHELITVLGYYGWRVSFRGLLKLGLCHKLPIVDPSGECLQAGCVXXXXX 530
+ ++C+ H+ VL G + K LC+K I+D E L CV
Sbjct: 400 HRLFNCWVCQNFHQSFAVLCSNGSLIIIWRSPKFSLCYKFSIMDSF*ESL*TDCVTNSC* 579
Query: 531 XXXXXXXFFHQSWKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIW 710
FF QS KF KIH P + I ISNGM WVL WQ LR ++ ++R+ I
Sbjct: 580 STIAIISFFDQSRNKFSKIHVPYCLIYIY*ISNGM*YLWVLQGWQHWLR*VIREKRMFIR 759
Query: 711 ALVSPNLCMELFSF 752
ALVS L M LFSF
Sbjct: 760 ALVSAKLSM*LFSF 801
Score = 118 bits (253), Expect(2) = 2e-030
Identities = 61/127 (48%), Positives = 75/127 (59%)
Frame = -2 / -3
Query: 753 GN*KAPCTGWEIQGPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLENVF**T 574
GN*KA C+ W+IQ P * F *A VAT A+P G SHC*F +Y+ + +VF* T
Sbjct: 802 GN*KATCSAWQIQEP**TSFFPG*LT*ASVATLAVPTGTTSHC*FNKYK*DSMGHVF*RT 623
Query: 573 SSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVSRVP*SLHASHNSPRP*S 394
S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S L H S R
Sbjct: 622 YS*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*ISGFSR*L*GCH*STRQQK 443
Query: 393 THEPSHI 373
T S I
Sbjct: 442 TDGNSDI 422
Score = 98.2 bits (208), Expect(2) = 3e-021
Identities = 52/112 (46%), Positives = 65/112 (58%)
Frame = -1 / -2
Query: 751 KLKSSMHRLGDTRAQMSTLSFPRICLSPGCHLCNTQGFCIPLLILSISTKRFGKCILMNF 572
KLKS M L DTRA M+ L LS CH C+T + IPLLI I +++G CIL N
Sbjct: 800 KLKSYMLSLADTRALMNILFSRMTYLSQCCHPCSTHRYYIPLLIQ*I*IRQYGTCILENL 621
Query: 571 FQDW*KKEVMVMLDPVLFVTQPACRHSPEGSTMGSLWQRPSFKSPLKLTRQP 416
F DW KKE+M ++D LFVTQ R S + S M +L QR +F + R P
Sbjct: 620 FLDWSKKEMMAIVDQQLFVTQSVYRLSQKESIMENL*QRLNFGLLQMIMRLP 465
Score = 34.1 bits (68), Expect(2) = 2e-030
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1 / -2
Query: 274 RCTRSFRAWSPSCTATESCR*PKRFKSRICLGGWIE 167
+CT+ + W SCR* +RFK C GWI+
Sbjct: 323 QCTKYDQPWLLIYMVNGSCR*QRRFKFSTC*EGWIK 216
Score = 25.8 bits (50), Expect(2) = 3e-021
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2 / -3
Query: 270 VQDRSELGRRAVQLQNHAANQRGSNRVFA*EAGLSMFM 157
VQ+ + G + +HAA++ GS+ V A + GLS M
Sbjct: 319 VQNTTNPGC*FIW*MDHAADKGGSSSVLAKKVGLSFAM 206
>gb|CN523137.1|CN523137 GQ015M01.B3_L24 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_L24 5', mRNA sequence
Length = 785
Score = 323 bits (700), Expect = 7e-088
Identities = 132/188 (70%), Positives = 153/188 (81%)
Frame = -3 / +1
Query: 752 ETEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDEL 573
ETEKLHAQ+GRYK PDEHPFF DLPEP LPP+QYP+VLHPI DSININK +W MYF EL
Sbjct: 88 ETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPITDSININKTVWDMYFREL 267
Query: 572 LPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQ 393
+PRLVKEG DGN GS+A+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI AQD +
Sbjct: 268 IPRLVKEGDDGNCGSTAVCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRAQDSKR 447
Query: 392 LMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPL 213
LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPL
Sbjct: 448 LMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGEWIMPL 627
Query: 212 TKEVQIAY 189
TKEVQ+ Y
Sbjct: 628 TKEVQVQY 651
Score = 249 bits (539), Expect = 1e-065
Identities = 120/194 (61%), Positives = 135/194 (69%)
Frame = +1 / -1
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S LLSKY TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 668 SXLLSKY*TXTSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 489
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALD 531
A ST YVR +S S A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ A+D
Sbjct: 488 TASSTAGYVRISISLLLSCALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQTAVD 309
Query: 532 PALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKKGCSSG 711
P LPS PS TNLG SS KY+ L I IES MGC T GYC GGN GSG+S KKGCSSG
Sbjct: 308 PQLPSSPSLTNLGISSLKYMSHTVLFIFIESVMGCSTCGYCKGGNTGSGKSSGKKGCSSG 129
Query: 712 PLYLPTCAWSFSVS 753
LYLP+ A SFSVS
Sbjct: 128 LLYLPS*ACSFSVS 87
Score = 120 bits (256), Expect = 1e-026
Identities = 66/194 (34%), Positives = 93/194 (47%)
Frame = +3 / -3
Query: 171 IQPPKQIRDLNLFG*RHDSVAVQLGDQARNDLVHRWAAVVLHTDVHLLPEDLGFGLHPVF 350
I P Q+ +L L RHD + + +Q + VH +++ H LP+ F L+ +F
Sbjct: 669 IXPS*QVLNLXLLCQRHDPFTI*ISNQGWSYFVHWVSSIYFSFHRHFLPKSFSFHLNSLF 490
Query: 351 DSTLHRFICEKVHELITVLGYYGWRVSFRGLLKLGLCHKLPIVDPSGECLQAGCVXXXXX 530
+ ++C+ H+ VL G + K LC+K I+D E L CV
Sbjct: 489 HRLFNCWVCQNFHQSFAVLCSNGSLIIIWRSPKFSLCYKFSIMDSF*ESL*TDCVTNSC* 310
Query: 531 XXXXXXXFFHQSWKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILGKERVLIW 710
FF QS KF KIH P + I ISNGM W+L WQ LR ++ ++R+ I
Sbjct: 309 STIAIISFFDQSRNKFSKIHVPYCLIYIY*ISNGM*YLWILQGWQHWLR*VIREKRMFIR 130
Query: 711 ALVSPNLCMELFSF 752
ALVS L M LFSF
Sbjct: 129 ALVSAKLSM*LFSF 88
Score = 110 bits (234), Expect(2) = 6e-027
Identities = 59/127 (46%), Positives = 73/127 (57%)
Frame = -2 / +3
Query: 753 GN*KAPCTGWEIQGPR*APFLFQGSA*APVATYAIPKGFASHC*FYQYQQRDLENVF**T 574
GN*KA C+ W+IQ P * F *A VAT A+ G SH *F +Y+ + +VF* T
Sbjct: 87 GN*KATCSAWQIQEP**TSFFPG*LT*ASVATLAVSTGTTSHY*FNKYK*DSMGHVF*RT 266
Query: 573 SSKIGERRK*W*CWIQCSL*HNLLAGTLQKDPLWEVCGRGQVSRVP*SLHASHNSPRP*S 394
S IG+RR+*W WI L*HNL G+L+K+PLW +C RG +S L H S R
Sbjct: 267 YS*IGQRRR*WQLWINSCL*HNLSTGSLKKNPLWRICSRG*ISGFSR*L*GCH*STRQQK 446
Query: 393 THEPSHI 373
T S I
Sbjct: 447 TDGNSDI 467
Score = 30.9 bits (61), Expect(2) = 6e-027
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1 / +2
Query: 274 RCTRSFRAWSPSCTATESCR*PKRFKSRICLGGWIE 167
+CT+ + W SCR* +R K C GWI+
Sbjct: 566 QCTKYDQPWLLIYMVNGSCR*QRRXKFSTC*EGWIK 673
>gb|CN520070.1|CN520070 GQ0107.B3_A09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_A09 5', mRNA sequence
Length = 698
Score = 233 bits (503), Expect = 1e-060
Identities = 96/151 (63%), Positives = 116/151 (76%)
Frame = -3 / +2
Query: 641 VLHPIADSININKEIWKMYFDELLPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFV 462
VLHP ADSININK++W MYF +LLP+L K G D N GS+A+CDT CLQALSRRIHYGKFV
Sbjct: 116 VLHPCADSININKKVWNMYFTDLLPKLAKAGDDDNCGSAAVCDTVCLQALSRRIHYGKFV 295
Query: 461 AEAKFQESPEAYTPAIIAQDRDQLMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNG 282
AEAKFQES Y AI QDR +LM LLTYETVE A++ RVE K + +GQE I +++
Sbjct: 296 AEAKFQESTAEYEAAIKVQDRARLMELLTYETVEAAVKKRVEMKTRKYGQEGRITQQEDA 475
Query: 281 SPPVYKIVPSLVAELYSYRIMPLTKEVQIAY 189
+ P+YK+ P LVA+LY IMPLTKEV++ Y
Sbjct: 476 ADPIYKVEPHLVAQLYEDWIMPLTKEVEVEY 568
Score = 163 bits (351), Expect = 1e-039
Identities = 87/163 (53%), Positives = 101/163 (61%)
Frame = +1 / -3
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
SSLL+KY+ TS V G+I S ATK G+ LY G S + S P L STL
Sbjct: 585 SSLLNKYSTSTSFVRGIIQSS*SWATKCGSTLYMGSAASSCWVILPSWPYFLVFISTLFL 406
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQRALD 531
A STVSYV MS +RS ++A ++ DS*NLASATNFP* IL + ACKQ VSQ A D
Sbjct: 405 TAASTVSYVNNSMSLARSCTLIAASYSAVDS*NLASATNFP**ILRDRACKQTVSQTAAD 226
Query: 532 PALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIG 660
P L S P+ N GR S KYIF LLILIESA GCKT+ + G
Sbjct: 225 PQLSSSPALANFGRRSVKYIFHTFLLILIESAQGCKTINHKSG 97
Score = 105 bits (225), Expect = 2e-022
Identities = 56/157 (35%), Positives = 79/157 (50%)
Frame = +3 / -2
Query: 171 IQPPKQIRDLNLFG*RHDSVAVQLGDQARNDLVHRWAAVVLHTDVHLLPEDLGFGLHPVF 350
++P +Q+ +LN F RH+ + V+LG+ ++ V L D LL F +P+
Sbjct: 586 VKPSQQVFNLNFFCQRHNPILVKLGN*MWLYFIYGIGCVFLLGDSSLLAIFSCFHFYPLL 407
Query: 351 DSTLHRFICEKVHELITVLGYYGWRVSFRGLLKLGLCHKLPIVDPSGECLQAGCVXXXXX 530
+S H FI +++HE +L + V G LK L HK IV+ + LQA CV
Sbjct: 406 NSCFHSFIRQQLHESSPILHFDSSFVFSSGFLKFSLGHKFSIVNSP*QSLQANCVANSSR 227
Query: 531 XXXXXXXFFHQSWKKFIKIHFPNLFVDIDRISNGMQN 641
F Q WKK KIH P LFVDI+ +S MQN
Sbjct: 226 STIVIISSFGQFWKKIRKIHIPYLFVDIN*VSTRMQN 116
>gb|CN549936.1|CN549936 GQ0243.B3_L22 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_L22 5', mRNA sequence
Length = 668
Score = 232 bits (500), Expect = 3e-060
Identities = 94/141 (66%), Positives = 106/141 (75%)
Frame = -3 / +3
Query: 752 ETEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDEL 573
ETE+LHAQ GRY+ PDEHPFF ++LP L P QYP+VLHP ADSININK++W MYF +L
Sbjct: 246 ETERLHAQAGRYRSPDEHPFFPENLPHSMLLPSQYPKVLHPCADSININKKVWNMYFTDL 425
Query: 572 LPRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQ 393
LP+L K G D N GS+A+CDT CLQALSRRIHYGKFVAEAKFQES Y A QDR
Sbjct: 426 LPKLAKAGDDDNCGSAAVCDTVCLQALSRRIHYGKFVAEAKFQESTAEYEAAXXXQDRAX 605
Query: 392 LMNLLTYETVERAIEHRVEAK 330
LM LLT VE A+ RVE K
Sbjct: 606 LMELLTXXXVEAAVXXRVEMK 668
Score = 161 bits (346), Expect = 5e-039
Identities = 80/139 (57%), Positives = 87/139 (62%)
Frame = +1 / -2
Query: 337 STLCSIARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVS 516
STL A ST YV M +RS A ++ DS*NLASATNFP* IL + ACKQ VS
Sbjct: 661 STLXXTAASTXXYVNNSMXLARSCXXXAASYSAVDS*NLASATNFP**ILRDRACKQTVS 482
Query: 517 QRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKTLGYCIGGNRGSGRSLEKK 696
Q A DP L S P+ N GR S KYIF LLILIESA GCKT GYC G + G+ K
Sbjct: 481 QTAADPQLSSSPALANFGRRSVKYIFHTFLLILIESAQGCKTFGYCDGSSIE*GKFSGKN 302
Query: 697 GCSSGPLYLPTCAWSFSVS 753
GCSSG LY P AWS SVS
Sbjct: 301 GCSSGLLYRPA*AWSLSVS 245
Score = 110 bits (235), Expect = 1e-023
Identities = 56/141 (39%), Positives = 70/141 (49%)
Frame = +3 / -1
Query: 330 FGLHPVFDSTLHRFICEKVHELITVLGYYGWRVSFRGLLKLGLCHKLPIVDPSGECLQAG 509
F +P +S H +++HE +L V G LK L HK IV+ + LQA
Sbjct: 668 FHFYPXXNSCFHXXXRQQLHEXSPILXXXSSFVLSSGFLKFSLGHKFSIVNSP*QSLQAN 489
Query: 510 CVXXXXXXXXXXXXFFHQSWKKFIKIHFPNLFVDIDRISNGMQNPWVLHRWQPGLRQILG 689
CV F Q WKK KIH P LFVDI+ +S MQN W+L R Q +R I
Sbjct: 488 CVANSSRSTIVIISSFGQFWKKIRKIHIPYLFVDIN*VSTRMQNLWILRRKQH*VR*IFW 309
Query: 690 KERVLIWALVSPNLCMELFSF 752
+ERVLI + P L ME F F
Sbjct: 308 EERVLIRTSIPPRLSMEPFGF 246
Score = 103 bits (219), Expect = 2e-021
Identities = 51/110 (46%), Positives = 67/110 (60%)
Frame = -1 / +1
Query: 751 KLKSSMHRLGDTRAQMSTLSFPRICLSPGCHLCNTQGFCIPLLILSISTKRFGKCILMNF 572
K K SM R G +MST S +I L+ C + Q FCI +L ISTKR+G CIL F
Sbjct: 247 KPKGSMLRRGGIEVRMSTRSSQKIYLTQCCFRRSIQRFCILVLTQLISTKRYGICILRIF 426
Query: 571 FQDW*KKEVMVMLDPVLFVTQPACRHSPEGSTMGSLWQRPSFKSPLKLTR 422
FQ+W K E+M ++D +LF TQ ACR TM +LW R +F++PL T+
Sbjct: 427 FQNWPKLEMMTIVDLLLFATQFACRLCHGEFTMENLWPRLNFRNPLLSTK 576
>gb|CV257819.1|CV257819 WS0247.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_L22 3', mRNA sequence
Length = 752
Score = 195 bits (421), Expect(2) = 7e-054
Identities = 82/149 (55%), Positives = 105/149 (70%)
Frame = -3 / -1
Query: 749 TEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDELL 570
TE + A+ GRY P+E+PFF +LP +P Y +VLH SININK IW MY ++LL
Sbjct: 752 TEAVQAKAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHSGGASININKAIWDMYLNQLL 573
Query: 569 PRLVKEGSDGNAGSSALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQL 390
P V G DGN S+A D +CLQALSRRIHYGKFVAE KF+++P+ Y P I A+D D+L
Sbjct: 572 PLFVVAGDDGNYASTAASDLSCLQALSRRIHYGKFVAEIKFRDAPQDYEPPIRAKDADEL 393
Query: 389 MNLLTYETVERAIEHRVEAKAKIFGQEVN 303
M LLT E VE+ ++ RVE KA +FGQ+V+
Sbjct: 392 MKLLTDERVEKMVKKRVEKKAIVFGQDVS 306
Score = 119 bits (254), Expect(2) = 3e-028
Identities = 61/112 (54%), Positives = 73/112 (65%)
Frame = +1 / +1
Query: 307 TSCPKILALASTLCSIARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WIL 486
TSCPK +A STL ST+S V F+S S S A + G *+ G S NL SATNFP*WIL
Sbjct: 310 TSCPKTIAFFSTLFLTIFSTLSSVNNFISSSASLARIGGS*SCGASLNLISATNFP*WIL 489
Query: 487 LESACKQVVSQRALDPALPSLPSFTNLGRSSSKYIFQISLLILIESAMGCKT 642
LE ACKQ+ S A+D LPS P+ TN G S +YI I+L +LIE+ CKT
Sbjct: 490 LERACKQLRSLAAVDA*LPSSPATTNKGSSWFRYISHIALFMLIEAPPECKT 645
Score = 35.4 bits (71), Expect(2) = 7e-054
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3 / -1
Query: 305 NIGVEDNGSPPVYKIVPSLVAELYSYRIMPLTKEVQIAY 189
++ +N YK+ PS+VA LY ++ LTK V++ Y
Sbjct: 314 DVSGSNNAVSKHYKVDPSVVARLYDEWVISLTKRVEVEY 198
Score = 25.8 bits (50), Expect(2) = 3e-028
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1 / +1
Query: 661 GNRGSGRSLEKKGCSSGPLYLPTCA 735
G G+ KKG SSG YLP A
Sbjct: 664 GTNEGGKLSGKKGFSSGFTYLPALA 738
>gb|BU836172.1|BU836172 T083E02 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 583
Score = 167 bits (359), Expect(2) = 1e-041
Identities = 71/113 (62%), Positives = 88/113 (77%)
Frame = -3 / +2
Query: 527 SALCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQLMNLLTYETVERAIE 348
+A+CDT CLQALS+RIHYG++VAEAKF+ SP+ Y AI AQD +LM +LTY VE A++
Sbjct: 32 TAVCDTICLQALSKRIHYGEYVAEAKFRASPDDYEAAIRAQDSKRLMEILTYPAVEEAVK 211
Query: 347 HRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPLTKEVQIAY 189
RVE KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPLTKEVQ+ Y
Sbjct: 212 KRVEMKAKAFGQEVTMEGEIDGTDPVYKIKPTLVADLYGEWIMPLTKEVQVQY 370
Score = 134 bits (288), Expect = 5e-031
Identities = 70/127 (55%), Positives = 84/127 (66%)
Frame = +1 / -2
Query: 148 LHLHKHTQSSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKIL 327
++ H S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK L
Sbjct: 411 MNRHCKA*SNLLSKY*T*TSFVSGMIHSPYKSATRVGFILYTGSVPSISPSIVTSCPKAL 232
Query: 328 ALASTLCSIARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQ 507
A ST A ST YVR +S S A+MA *+SG++ NLASAT P*WIL E ACKQ
Sbjct: 231 AFISTRFFTASSTAGYVRISISLLLSCALMAAS*SSGEARNLASATYSP*WILFERACKQ 52
Query: 508 VVSQRAL 528
+VSQ A+
Sbjct: 51 IVSQTAV 31
Score = 23.1 bits (44), Expect(2) = 1e-041
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3 / +3
Query: 557 KEGSDGNAGS 528
KEG DGN GS
Sbjct: 3 KEGDDGNCGS 32
>gb|DN492268.1|DN492268 V059F02.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V059F02 3', mRNA sequence
Length = 618
Score = 161 bits (347), Expect = 4e-039
Identities = 70/111 (63%), Positives = 85/111 (76%)
Frame = -3 / -1
Query: 521 LCDTTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQLMNLLTYETVERAIEHR 342
+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y AI A D +LM +LTY VE A++ R
Sbjct: 618 VCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRA*DSKRLMEILTYPAVEEAVKKR 439
Query: 341 VEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPLTKEVQIAY 189
VE KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPLTKEVQ+ Y
Sbjct: 438 VEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGEWIMPLTKEVQVQY 286
Score = 139 bits (299), Expect = 1e-032
Identities = 69/116 (59%), Positives = 82/116 (70%)
Frame = +1 / +2
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 269 SNLLSKY*T*TSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 448
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLESACKQVVSQ 519
A ST YVR +S S+A+MA *+SG++ NLASATN P*WIL E AC+Q+VSQ
Sbjct: 449 TASSTAGYVRISISLLLSYALMAAS*SSGEARNLASATNSP*WILFERACRQIVSQ 616
>gb|BU879394.1|BU879394 V059F02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 626
Score = 143 bits (307), Expect = 1e-033
Identities = 64/108 (59%), Positives = 79/108 (73%)
Frame = -3 / +3
Query: 512 TTCLQALSRRIHYGKFVAEAKFQESPEAYTPAIIAQDRDQLMNLLTYETVERAIEHRVEA 333
T + LS+RIHYG+FVAEAKF+ SP+ Y AI A D +LM +LTY VE A++ RVE
Sbjct: 6 TQSVYRLSKRIHYGEFVAEAKFRASPDDYEAAIRA*DSKRLMEILTYPAVEEAVKKRVEM 185
Query: 332 KAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSYRIMPLTKEVQIAY 189
KAK FGQEV + E +G+ PVYKI P+LVA+LY IMPLTKEVQ+ Y
Sbjct: 186 KAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGEWIMPLTKEVQVQY 329
Score = 127 bits (272), Expect = 8e-029
Identities = 65/108 (60%), Positives = 76/108 (70%)
Frame = +1 / -2
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 346 SNLLSKY*T*TSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 167
Query: 352 IARSTVSYVRRFMS*SRSWAIMAGV*ASGDS*NLASATNFP*WILLES 495
A ST YVR +S S+A+MA *+SG++ NLASATN P*WILLES
Sbjct: 166 TASSTAGYVRISISLLLSYALMAAS*SSGEARNLASATNSP*WILLES 23
>gb|CX176039.1|CX176039 A12_69-61_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 640
Score = 100 bits (214), Expect(2) = 2e-031
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = -3 / +1
Query: 407 QDRDQLMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAELYSY 228
QD +LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVYKI P+LVA+LY
Sbjct: 244 QDSKRLMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADLYGE 423
Query: 227 RIMPLTKEVQIAY 189
IMPLTKEVQ+ Y
Sbjct: 424 WIMPLTKEVQVQY 462
Score = 84.9 bits (179), Expect(2) = 7e-023
Identities = 42/70 (60%), Positives = 47/70 (67%)
Frame = +1 / -3
Query: 172 SSLLSKYAI*TSLVSGMIL*LYSSATKLGTILYTGGLPLSSTPMFTSCPKILALASTLCS 351
S+LLSKY *TS VSGMI Y SAT++G ILYTG +P S + TSCPK LA STL
Sbjct: 479 SNLLSKY*T*TSFVSGMIHSPYKSATRVGRILYTGSVPSISPSIVTSCPKALAFISTLFF 300
Query: 352 IARSTVSYVR 381
A ST YVR
Sbjct: 299 TASSTAGYVR 270
Score = 55.1 bits (114), Expect(2) = 2e-031
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = -3 / +3
Query: 500 QALSRRIHYGKFVAEAKFQESPEAYTPAIIAQ 405
QALS+RIHYG+FVAEAKF+ SP+ Y AI AQ
Sbjct: 54 QALSKRIHYGEFVAEAKFRASPDDYEAAIRAQ 149
Score = 44.1 bits (90), Expect(2) = 7e-023
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +1 / -1
Query: 409 AIMAGV*ASGDS*NLASATNFP*WILLESA 498
A+MA *+SG++ NLASATN P*WIL E A
Sbjct: 145 ALMAAS*SSGEARNLASATNSP*WILFERA 56
>gb|DN502211.1|DN502211 V059F02.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V059F02 5', mRNA sequence
Length = 518
Score = 64.8 bits (135), Expect(3) = 6e-025
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -3 / +1
Query: 521 LCDTTCLQALSRRIHYGKFVAEAKFQESPEAY 426
+CDT CLQALS+RIHYG+FVAEAKF+ SP+ Y
Sbjct: 1 VCDTICLQALSKRIHYGEFVAEAKFRASPDDY 96
Score = 57.0 bits (118), Expect(3) = 6e-025
Identities = 24/43 (55%), Positives = 31/43 (72%)
Frame = -3 / +3
Query: 395 QLMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVY 267
+LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVY
Sbjct: 102 RLMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVY 230
Score = 29.9 bits (59), Expect(3) = 6e-025
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -3 / +3
Query: 239 LYSYRIMPLTKEVQIAY 189
LY IMPLTKEVQ+ Y
Sbjct: 231 LYGEWIMPLTKEVQVQY 281
>gb|CN523227.1|CN523227 GQ015M01.B3_J05 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M01_J05 5', mRNA sequence
Length = 813
Score = 104 bits (221), Expect(2) = 3e-024
Identities = 43/85 (50%), Positives = 54/85 (63%)
Frame = -3 / +3
Query: 752 ETEKLHAQVGRYKGPDEHPFFSKDLPEPRLPPMQYPRVLHPIADSININKEIWKMYFDEL 573
ETE + A+ GRY P+E+PFF +LP +P Y +VLH SININK IW MY ++L
Sbjct: 357 ETEAVQAKAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHTGGASININKAIWDMYLNQL 536
Query: 572 LPRLVKEGSDGNAGSSALCDTTCLQ 498
LP V G DGN S+A D +CLQ
Sbjct: 537 LPLFVVAGDDGNYASTAASDLSCLQ 611
Score = 27.6 bits (54), Expect(2) = 3e-024
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3 / +1
Query: 503 LQALSRRIHYGKFV 462
LQALS HYGKFV
Sbjct: 736 LQALSXXXHYGKFV 777
>gb|CV228042.1|CV228042 WS0168.B21_O22 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_O22
3', mRNA sequence
Length = 541
Score = 105 bits (223), Expect = 5e-022
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = -3 / +1
Query: 419 AIIAQDRDQLMNLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKIVPSLVAE 240
AI AQD +LM +LTY VE A++ RVE KAK FGQEV + E +G+ PVYKI P+LVA+
Sbjct: 1 AIRAQDSKRLMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVAD 180
Query: 239 LYSYRIMPLTKEVQIAY 189
LY IMPLTKEVQ+ Y
Sbjct: 181 LYGEWIMPLTKEVQVQY 231
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 458,473,034
Number of Sequences: 369679
Number of extensions: 7777412
Number of successful extensions: 67556
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9715916000
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)