TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ774738.1|AJ774738 AJ774738 Populus euphratica shoot 3-... 119 2e-026
gb|CK095578.1|CK095578 UA14CPH12.3pR Populus dormant cambiu... 116 1e-025
gb|BP931106.1|BP931106 BP931106 full-length enriched poplar... 114 5e-025
gb|BP932015.1|BP932015 BP932015 full-length enriched poplar... 114 5e-025
gb|BP935319.1|BP935319 BP935319 full-length enriched poplar... 114 5e-025
gb|DT477027.1|DT477027 WS01231.B21_L09 PT-GT-FL-A-3 Populus... 101 2e-023
gb|BP934618.1|BP934618 BP934618 full-length enriched poplar... 101 1e-022
gb|CV240642.1|CV240642 WS0251.B21_P03 PT-MB-N-A-15 Populus ... 101 5e-021
gb|CV277009.1|CV277009 WS0142.B21_G13 PTxD-IL-A-5 Populus t... 100 1e-020
gb|CV280613.1|CV280613 WS0137.B21_A16 PTxD-IL-FL-A-4 Populu... 100 1e-020
gb|CV280804.1|CV280804 WS0137.B21_M10 PTxD-IL-FL-A-4 Populu... 100 1e-020
gb|DT504436.1|DT504436 WS01313.B21_F21 PTxD-IL-FL-A-4 Popul... 100 1e-020
>gb|AJ774738.1|AJ774738 AJ774738 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300023G03F1, mRNA sequence
Length = 670
Score = 119 bits (254), Expect = 2e-026
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = -2 / +2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
EVLAHPA GGF+TH GWNST+E++ EGVPMIC P GDQ NARYV VWK+GT + ++
Sbjct: 272 EVLAHPATGGFWTHNGWNSTLESICEGVPMICQPFFGDQRVNARYVSDVWKIGTHLEYNK 451
Query: 513 LERGEIKAAIDRLM 472
LER EI+ AI LM
Sbjct: 452 LERREIERAIKALM 493
>gb|CK095578.1|CK095578 UA14CPH12.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA14CPH12 3', mRNA sequence
Length = 574
Score = 116 bits (249), Expect = 1e-025
Identities = 47/74 (63%), Positives = 56/74 (75%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
EVLAHPA GGF+TH GWNST+E++ EGVPMIC P GDQ NARYV VWK+G + ++
Sbjct: 338 EVLAHPATGGFWTHSGWNSTLESICEGVPMICQPFSGDQRVNARYVSDVWKIGIHLEYNK 159
Query: 513 LERGEIKAAIDRLM 472
LER EI+ AI LM
Sbjct: 158 LERREIERAIKGLM 117
>gb|BP931106.1|BP931106 BP931106 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-018_K10.r 3', mRNA sequence
Length = 608
Score = 114 bits (244), Expect = 5e-025
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA GGF+TH GWNST+E++ EGVPMIC P GDQ NARYV VWK+G + ++
Sbjct: 501 QVLAHPATGGFWTHNGWNSTLESICEGVPMICQPFFGDQRVNARYVSDVWKIGIHLEYNK 322
Query: 513 LERGEIKAAIDRLM 472
LER EI+ AI LM
Sbjct: 321 LERREIERAIKGLM 280
>gb|BP932015.1|BP932015 BP932015 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-030_L18.r 3', mRNA sequence
Length = 574
Score = 114 bits (244), Expect = 5e-025
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -2 / -2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA GGF+TH GWNST+E++ EGVPMIC P GDQ NARYV VWK+G + ++
Sbjct: 498 QVLAHPATGGFWTHNGWNSTLESICEGVPMICQPFFGDQRVNARYVSDVWKIGIHLEYNK 319
Query: 513 LERGEIKAAIDRLM 472
LER EI+ AI LM
Sbjct: 318 LERREIERAIKGLM 277
>gb|BP935319.1|BP935319 BP935319 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-076_B15.r 3', mRNA sequence
Length = 640
Score = 114 bits (244), Expect = 5e-025
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEVAGDQ 514
+VLAHPA GGF+TH GWNST+E++ EGVPMIC P GDQ NARYV VWK+G + ++
Sbjct: 506 QVLAHPATGGFWTHNGWNSTLESICEGVPMICQPFFGDQRVNARYVSDVWKIGIHLEYNK 327
Query: 513 LERGEIKAAIDRLM 472
LER EI+ AI LM
Sbjct: 326 LERREIERAIKGLM 285
>gb|DT477027.1|DT477027 WS01231.B21_L09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_L09 3', mRNA sequence
Length = 925
Score = 101 bits (216), Expect(2) = 2e-023
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVLAH AVGGF++HCGWNST+E++SEGVPMIC P GDQ NARY +VW +G ++
Sbjct: 479 EVLAHSAVGGFWSHCGWNSTLESISEGVPMICKPCFGDQRVNARYASYVWGIGLQL 312
Score = 26.7 bits (52), Expect(2) = 2e-023
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2 / -3
Query: 519 DQLERGEIKAAIDRLMGGSEEGEGIRKRMN 430
++LER EI+ AI RLM SE E K N
Sbjct: 308 NKLERKEIERAIRRLMVDSEGEEMRHKAKN 219
>gb|BP934618.1|BP934618 BP934618 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-067_H11.r 3', mRNA sequence
Length = 656
Score = 101 bits (216), Expect(2) = 1e-022
Identities = 37/56 (66%), Positives = 46/56 (82%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVLAH AVGGF++HCGWNST+E++SEGVPMIC P GDQ NARY +VW +G ++
Sbjct: 414 EVLAHAAVGGFWSHCGWNSTLESISEGVPMICKPCFGDQRVNARYASYVWGIGLQL 247
Score = 24.4 bits (47), Expect(2) = 1e-022
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2 / -3
Query: 519 DQLERGEIKAAIDRLMGGSEEGEGIRKRMN 430
++LER E + AI RLM SE E K N
Sbjct: 243 NRLERKETERAIRRLMVDSEGEEMRHKAKN 154
>gb|CV240642.1|CV240642 WS0251.B21_P03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_P03 3', mRNA sequence
Length = 845
Score = 101 bits (215), Expect = 5e-021
Identities = 34/56 (60%), Positives = 42/56 (75%)
Frame = -2 / -2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL HP+VGGF THCGW ST+E++S GVPM+C P GDQ N RY C+ W +G E+
Sbjct: 580 EVLDHPSVGGFLTHCGWGSTIESISSGVPMLCWPSFGDQQTNCRYACNEWAIGMEI 413
>gb|CV277009.1|CV277009 WS0142.B21_G13 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_G13 3', mRNA sequence
Length = 883
Score = 100 bits (213), Expect = 1e-020
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HP++GGF THCGW ST+E++S GVPM+C P GDQ N RY C W +G E+
Sbjct: 557 EVLSHPSIGGFITHCGWGSTIESISSGVPMLCWPSFGDQQTNCRYTCTEWGIGMEI 390
>gb|CV280613.1|CV280613 WS0137.B21_A16 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_A16 3', mRNA sequence
Length = 879
Score = 100 bits (213), Expect = 1e-020
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = -2 / -2
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HP++GGF THCGW ST+E++S GVPM+C P GDQ N RY C W +G E+
Sbjct: 575 EVLSHPSIGGFITHCGWGSTIESISSGVPMLCWPSFGDQQTNCRYTCTEWGIGMEI 408
>gb|CV280804.1|CV280804 WS0137.B21_M10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_M10 3', mRNA sequence
Length = 887
Score = 100 bits (213), Expect = 1e-020
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = -2 / -1
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HP++GGF THCGW ST+E++S GVPM+C P GDQ N RY C W +G E+
Sbjct: 575 EVLSHPSIGGFITHCGWGSTIESISSGVPMLCWPSFGDQQTNCRYTCTEWGIGMEI 408
>gb|DT504436.1|DT504436 WS01313.B21_F21 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01313_F21 3', mRNA sequence
Length = 844
Score = 100 bits (213), Expect = 1e-020
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = -2 / -3
Query: 693 EVLAHPAVGGFFTHCGWNSTVEAVSEGVPMICHPRHGDQYGNARYVCHVWKVGTEV 526
EVL+HP++GGF THCGW ST+E++S GVPM+C P GDQ N RY C W +G E+
Sbjct: 575 EVLSHPSIGGFITHCGWGSTIESISSGVPMLCWPSFGDQQTNCRYTCTEWGIGMEI 408
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 274,385,171
Number of Sequences: 369679
Number of extensions: 3860251
Number of successful extensions: 135426
Number of sequences better than 1.0e-020: 12
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 8647165240
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)