TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT481964.1|DT481964 WS02533.BR_H16 PT-MB-N-A-15 Populus ... 189 1e-047
gb|DT487357.1|DT487357 WS02533.B21_H16 PT-MB-N-A-15 Populus... 189 1e-047
gb|CF228071.1|CF228071 PtaXM0008D2D0208 Poplar cDNA library... 187 1e-046
gb|CF234811.1|CF234811 PtaJXT0015D8D0808 Poplar cDNA librar... 180 8e-045
gb|CV230612.1|CV230612 WS0192.B21_B13 PT-DX-N-A-10 Populus ... 149 2e-035
gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library ... 137 8e-032
gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus ... 136 2e-031
gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus tr... 136 2e-031
gb|CV248490.1|CV248490 WS01120.B21_P04 PT-P-FL-A-2 Populus ... 134 7e-031
gb|DT475725.1|DT475725 WS0128.BR_A07 PT-GT-FL-A-3 Populus t... 134 7e-031
gb|DT495598.1|DT495598 WS01120.BR_P04 PT-P-FL-A-2 Populus t... 134 7e-031
gb|DT498907.1|DT498907 WS0116.BR_L05 PT-P-FL-A-2 Populus tr... 134 7e-031
gb|DT500911.1|DT500911 PX0019.BR_M17 PT-X-FL-A-1 Populus tr... 134 7e-031
gb|AJ769297.1|AJ769297 AJ769297 Populus euphratica leaf adu... 133 1e-030
gb|BI128260.1|BI128260 G073P32Y Populus cambium cDNA librar... 133 1e-030
gb|CB239680.1|CB239680 RSH15C07 two-month-old roots from cl... 133 1e-030
gb|AI162294.1|AI162294 A015P38U Hybrid aspen plasmid librar... 133 2e-030
gb|CV236388.1|CV236388 WS01223.B21_O18 PT-GT-FL-A-3 Populus... 133 2e-030
gb|AI161908.1|AI161908 A009P39U Hybrid aspen plasmid librar... 132 3e-030
gb|CA825212.1|CA825212 R55B12 two-month-old roots from clon... 132 3e-030
gb|CF231938.1|CF231938 PtaC0027F12F1212 Poplar cDNA library... 132 3e-030
gb|CK098220.1|CK098220 A008P12.5pR Hybrid aspen plasmid lib... 132 3e-030
gb|CK098245.1|CK098245 A009P39.5pR Hybrid aspen plasmid lib... 132 3e-030
gb|DT489931.1|DT489931 WS02543.B21_J08 PT-MB-N-A-15 Populus... 132 3e-030
gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library ... 131 5e-030
gb|BU820620.1|BU820620 UB12CPB07 Populus tremula cambium cD... 128 3e-029
gb|CV238776.1|CV238776 WS0128.B21.1_A07 PT-GT-FL-A-3 Populu... 124 6e-028
gb|AI164501.1|AI164501 A062p25u Hybrid aspen plasmid librar... 109 9e-028
gb|AI163909.1|AI163909 A051P24U Hybrid aspen plasmid librar... 107 1e-025
gb|AI164764.1|AI164764 A068P40U Hybrid aspen plasmid librar... 106 9e-025
gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid lib... 112 2e-024
>gb|DT481964.1|DT481964 WS02533.BR_H16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_H16 5', mRNA sequence
Length = 731
Score = 189 bits (408), Expect = 1e-047
Identities = 71/103 (68%), Positives = 90/103 (87%)
Frame = -2 / -1
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
MG+L T LTH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAYWILYSF+TL EMLL
Sbjct: 641 MGRLLTFLTHVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYWILYSFLTLTEMLL 462
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRK 307
+SL+ WIPIWY LKL+ AWLVLP F+GAAF+Y+++VRE + K
Sbjct: 461 QSLLEWIPIWYSLKLVLAAWLVLPQFKGAAFVYERYVREHITK 333
>gb|DT487357.1|DT487357 WS02533.B21_H16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_H16 3', mRNA sequence
Length = 745
Score = 189 bits (408), Expect = 1e-047
Identities = 71/103 (68%), Positives = 90/103 (87%)
Frame = -2 / +3
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
MG+L T LTH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAYWILYSF+TL EMLL
Sbjct: 105 MGRLLTFLTHVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYWILYSFLTLTEMLL 284
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRK 307
+SL+ WIPIWY LKL+ AWLVLP F+GAAF+Y+++VRE + K
Sbjct: 285 QSLLEWIPIWYSLKLVLAAWLVLPQFKGAAFVYERYVREHITK 413
>gb|CF228071.1|CF228071 PtaXM0008D2D0208 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 681
Score = 187 bits (402), Expect = 1e-046
Identities = 70/103 (67%), Positives = 89/103 (86%)
Frame = -2 / +2
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
M +L T LTH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAYWILYSF+TL EMLL
Sbjct: 110 MSRLLTFLTHVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYWILYSFLTLTEMLL 289
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRK 307
+SL+ WIPIWY LKL+ AWLVLP F+GAAF+Y+++VRE + K
Sbjct: 290 QSLLEWIPIWYSLKLVLAAWLVLPQFKGAAFVYERYVREHITK 418
>gb|CF234811.1|CF234811 PtaJXT0015D8D0808 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 752
Score = 180 bits (388), Expect = 8e-045
Identities = 69/103 (66%), Positives = 88/103 (85%)
Frame = -2 / +3
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLL 436
M +L T LTH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAY ILYSF+TL EMLL
Sbjct: 111 MSRLLTFLTHVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYRILYSFLTLTEMLL 290
Query: 435 ESLIYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQLRK 307
+SL+ WIPIWY LKL+ AWLVLP F+GAAF+Y+++VRE + K
Sbjct: 291 QSLLEWIPIWYSLKLVLAAWLVLPQFKGAAFVYERYVREHITK 419
>gb|CV230612.1|CV230612 WS0192.B21_B13 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_B13 3', mRNA sequence
Length = 688
Score = 149 bits (320), Expect = 2e-035
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = -2 / +3
Query: 561 VMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFI 382
++LL YASV A+ESPS+ DD+QWLAYWILYSF+TL EMLL+SL+ WIPIWY LKL+
Sbjct: 120 IVLLVNRYASVVAIESPSREDDKQWLAYWILYSFLTLTEMLLQSLLEWIPIWYSLKLVLA 299
Query: 381 AWLVLPNFRGAAFIYDKFVREQLRK 307
AWLVLP F+GAAF+Y+++VRE + K
Sbjct: 300 AWLVLPQFKGAAFVYERYVREHITK 374
>gb|BU873882.1|BU873882 Q061A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 555
Score = 137 bits (294), Expect = 8e-032
Identities = 52/95 (54%), Positives = 68/95 (71%)
Frame = -2 / +1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L + LAGP + L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ L
Sbjct: 91 LKVLLENFDVLAGPVISLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKL 270
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I WIPIW KL+ WLV+P F GAA++Y+ FVR
Sbjct: 271 IEWIPIWPFAKLILTCWLVVPYFSGAAYVYENFVR 375
>gb|CV246557.1|CV246557 WS01111.B21_B06 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 3', mRNA sequence
Length = 767
Score = 136 bits (291), Expect = 2e-031
Identities = 51/95 (53%), Positives = 68/95 (71%)
Frame = -2 / -1
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L + LAGP + L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +
Sbjct: 725 LKVLLENFDVLAGPVISLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKV 546
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I WIPIW KL+ WLV+P F GAA++Y+ FVR
Sbjct: 545 IEWIPIWPFAKLILTCWLVVPYFSGAAYVYENFVR 441
>gb|DT499923.1|DT499923 WS9991.BR_L17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01111_B06 5', mRNA sequence
Length = 483
Score = 136 bits (291), Expect = 2e-031
Identities = 51/95 (53%), Positives = 68/95 (71%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L + LAGP + L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +
Sbjct: 183 LKVLLENFDVLAGPVISLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKV 362
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I WIPIW KL+ WLV+P F GAA++Y+ FVR
Sbjct: 363 IEWIPIWPFAKLILTCWLVVPYFSGAAYVYENFVR 467
>gb|CV248490.1|CV248490 WS01120.B21_P04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_P04 3', mRNA sequence
Length = 657
Score = 134 bits (287), Expect = 7e-031
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / -2
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 569 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 390
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 389 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 294
>gb|DT475725.1|DT475725 WS0128.BR_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_A07 5', mRNA sequence
Length = 574
Score = 134 bits (287), Expect = 7e-031
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 202 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 381
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 382 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 477
>gb|DT495598.1|DT495598 WS01120.BR_P04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_P04 5', mRNA sequence
Length = 676
Score = 134 bits (287), Expect = 7e-031
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / +3
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 108 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 287
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 288 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 383
>gb|DT498907.1|DT498907 WS0116.BR_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_L05
5', mRNA sequence
Length = 635
Score = 134 bits (287), Expect = 7e-031
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / +2
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 155 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 334
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 335 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 430
>gb|DT500911.1|DT500911 PX0019.BR_M17 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_M17
5', mRNA sequence
Length = 624
Score = 134 bits (287), Expect = 7e-031
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / +3
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 141 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 320
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 321 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 416
>gb|AJ769297.1|AJ769297 AJ769297 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100028D12F1, mRNA sequence
Length = 618
Score = 133 bits (286), Expect = 1e-030
Identities = 49/92 (53%), Positives = 67/92 (72%)
Frame = -2 / +2
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 128 LLKNFDVLSGPLVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 307
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 308 IPIWPYARLILTCWLVIPYFSGAAYVYENFVR 403
>gb|BI128260.1|BI128260 G073P32Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 421
Score = 133 bits (285), Expect = 1e-030
Identities = 48/92 (52%), Positives = 67/92 (72%)
Frame = -2 / +3
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL+E+ +I W
Sbjct: 129 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLLELTFAKVIEW 308
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 309 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 404
>gb|CB239680.1|CB239680 RSH15C07 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 579
Score = 133 bits (285), Expect = 1e-030
Identities = 49/91 (53%), Positives = 66/91 (72%)
Frame = -2 / +3
Query: 594 LTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWI 415
L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I WI
Sbjct: 147 LRNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEWI 326
Query: 414 PIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
PIW +L+ WLV+P F GAA++Y+ FVR
Sbjct: 327 PIWPYARLILTCWLVIPYFSGAAYVYENFVR 419
>gb|AI162294.1|AI162294 A015P38U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 566
Score = 133 bits (284), Expect = 2e-030
Identities = 49/95 (51%), Positives = 67/95 (70%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 103 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 282
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
IPIW +L+ WLV+P F GA ++Y+ FVR L
Sbjct: 283 IPIWPYARLILTCWLVIPYFSGATYVYENFVRLSL 387
>gb|CV236388.1|CV236388 WS01223.B21_O18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_O18 3', mRNA sequence
Length = 818
Score = 133 bits (284), Expect = 2e-030
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = -2 / -1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I WIPIW
Sbjct: 812 LSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEWIPIWPYA 633
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
+L+ WLV+P F GAA++Y+ FVR
Sbjct: 632 RLILTCWLVIPYFSGAAYVYENFVR 558
>gb|AI161908.1|AI161908 A009P39U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 505
Score = 132 bits (283), Expect = 3e-030
Identities = 48/92 (52%), Positives = 66/92 (71%)
Frame = -2 / +3
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 9 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 188
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 189 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 284
>gb|CA825212.1|CA825212 R55B12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 550
Score = 132 bits (283), Expect = 3e-030
Identities = 48/92 (52%), Positives = 66/92 (71%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 115 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 294
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 295 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 390
>gb|CF231938.1|CF231938 PtaC0027F12F1212 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 571
Score = 132 bits (283), Expect = 3e-030
Identities = 48/92 (52%), Positives = 66/92 (71%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 139 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 318
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 319 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 414
>gb|CK098220.1|CK098220 A008P12.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A008P12 5', mRNA sequence
Length = 547
Score = 132 bits (283), Expect = 3e-030
Identities = 48/92 (52%), Positives = 66/92 (71%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 28 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 207
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 208 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 303
>gb|CK098245.1|CK098245 A009P39.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A009P39 5', mRNA sequence
Length = 575
Score = 132 bits (283), Expect = 3e-030
Identities = 48/92 (52%), Positives = 66/92 (71%)
Frame = -2 / +2
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 26 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 205
Query: 417 IPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
IPIW +L+ WLV+P F GA ++Y+ FVR
Sbjct: 206 IPIWPYARLILTCWLVIPYFSGATYVYENFVR 301
>gb|DT489931.1|DT489931 WS02543.B21_J08 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02543_J08 3', mRNA sequence
Length = 819
Score = 132 bits (282), Expect = 3e-030
Identities = 48/91 (52%), Positives = 66/91 (72%)
Frame = -2 / -2
Query: 594 LTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWI 415
L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I WI
Sbjct: 818 LKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEWI 639
Query: 414 PIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
PIW +L+ WLV+P F GA+++Y+ FVR
Sbjct: 638 PIWPYARLILTCWLVIPYFSGASYVYENFVR 546
>gb|BU871910.1|BU871910 Q036A01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 407
Score = 131 bits (281), Expect = 5e-030
Identities = 50/95 (52%), Positives = 67/95 (70%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L + LAGP + L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ L
Sbjct: 87 LKVLLENFDVLAGPVISLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKL 266
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVR 322
I WIPIW KL+ WLV+P F GAA++++ VR
Sbjct: 267 IEWIPIWPFAKLILTCWLVVPYFSGAAYVHENSVR 371
>gb|BU820620.1|BU820620 UB12CPB07 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 504
Score = 128 bits (275), Expect = 3e-029
Identities = 46/83 (55%), Positives = 61/83 (73%)
Frame = -2 / +2
Query: 570 GPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKL 391
GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I WIPIW +L
Sbjct: 29 GPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEWIPIWPYARL 208
Query: 390 LFIAWLVLPNFRGAAFIYDKFVR 322
+ WLV+P F GA ++Y+ FVR
Sbjct: 209 ILTCWLVIPYFSGATYVYENFVR 277
>gb|CV238776.1|CV238776 WS0128.B21.1_A07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_A07 3', mRNA sequence
Length = 661
Score = 124 bits (266), Expect = 6e-028
Identities = 45/80 (56%), Positives = 60/80 (75%)
Frame = -2 / -1
Query: 561 VMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYELKLLFI 382
V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I WIPIW +L+
Sbjct: 661 VSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEWIPIWPYARLILT 482
Query: 381 AWLVLPNFRGAAFIYDKFVR 322
WLV+P F GAA++Y+ FVR
Sbjct: 481 CWLVIPYFSGAAYVYENFVR 422
>gb|AI164501.1|AI164501 A062p25u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 375
Score = 109 bits (232), Expect(2) = 9e-028
Identities = 42/59 (71%), Positives = 52/59 (88%)
Frame = -2 / +1
Query: 615 MGKLWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEML 439
M +L T LTH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAYWILYSF+TL EML
Sbjct: 64 MSRLLTFLTHVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYWILYSFLTLTEML 240
Score = 34.5 bits (69), Expect(2) = 9e-028
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 438 LESLIYWIPIWYELKLL 388
++SL+ WIPIWY LKL+
Sbjct: 240 VQSLLEWIPIWYSLKLV 290
>gb|AI163909.1|AI163909 A051P24U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 401
Score = 107 bits (228), Expect(2) = 1e-025
Identities = 41/55 (74%), Positives = 51/55 (92%)
Frame = -2 / +3
Query: 591 THLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
TH+H+++GP +MLLYPLYASV A+ESPS+ DD+QWLAYWILYSF+TL EMLL+SL
Sbjct: 120 THVHTISGPVLMLLYPLYASVVAIESPSREDDKQWLAYWILYSFLTLTEMLLQSL 284
Score = 29.5 bits (58), Expect(2) = 1e-025
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 420 WIPIWYELKLL 388
WIPIWY LKL+
Sbjct: 290 WIPIWYSLKLV 322
>gb|AI164764.1|AI164764 A068P40U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 424
Score = 106 bits (227), Expect(2) = 9e-025
Identities = 39/75 (52%), Positives = 53/75 (70%)
Frame = -2 / +1
Query: 597 ILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYW 418
+L + L+GP V L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ +I W
Sbjct: 13 LLKNFDVLSGPVVSLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKVIEW 192
Query: 417 IPIWYELKLLFIAWL 373
IPIW +L+ WL
Sbjct: 193 IPIWPYARLILTCWL 237
Score = 26.7 bits (52), Expect(2) = 9e-025
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2 / +3
Query: 369 LPNFRGAAFIYDKFVR 322
+P F GA ++Y+ FVR
Sbjct: 240 IPYFSGATYVYENFVR 287
>gb|CK099512.1|CK099512 A071P32.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A071P32 5', mRNA sequence
Length = 384
Score = 112 bits (240), Expect = 2e-024
Identities = 43/81 (53%), Positives = 56/81 (69%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L +L + LAGP + L+YPLYAS+RA+E+ S +DD+QWL YWILYS +TL E+ L
Sbjct: 138 LKVLLENFDVLAGPVISLVYPLYASIRAIETKSHVDDKQWLTYWILYSMITLFELTFAKL 317
Query: 426 IYWIPIWYELKLLFIAWLVLP 364
I WIPIW KL+ WL +P
Sbjct: 318 IEWIPIWPFAKLILTCWLGVP 380
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 354,921,734
Number of Sequences: 369679
Number of extensions: 5023409
Number of successful extensions: 47513
Number of sequences better than 1.0e-020: 39
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 10298870960
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)