TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid lib... 223 7e-058
gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDN... 221 5e-057
gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substr... 219 2e-056
gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal libra... 218 3e-056
gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus... 218 3e-056
gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDN... 218 3e-056
gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Librar... 188 4e-047
gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Po... 179 1e-044
gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid librar... 178 2e-044
gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichoca... 156 1e-037
gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA librar... 146 2e-034
gb|CK092956.1|CK092956 G101P62.3pR Populus tension wood cDN... 100 1e-020
>gb|CK087291.1|CK087291 A002P26.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A002P26 3', mRNA sequence
Length = 805
Score = 223 bits (482), Expect = 7e-058
Identities = 84/123 (68%), Positives = 98/123 (79%)
Frame = -2 / -1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ D KV+IEN YY HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGS
Sbjct: 727 LSQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGS 548
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPVERC+RSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 547 YGDYPVERCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIR 368
Query: 301 AKI 293
+
Sbjct: 367 RPV 359
Score = 120 bits (257), Expect = 8e-027
Identities = 60/89 (67%), Positives = 61/89 (68%)
Frame = +3 / +3
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL RSTG*SP*LP GL PTK VT GH SSP P FSII SY
Sbjct: 462 PYSLRTWLSAKLKALSMLLMHRSTG*SP*LPQGLQPTKWVTNGHLSSPNPG*YFSIISSY 641
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFCES 662
ST AQ PC * FS+ TL SFCES
Sbjct: 642 RSTKPAQYPCK*Y*FSI*TLSIH*SFCES 728
Score = 109 bits (233), Expect = 2e-023
Identities = 52/124 (41%), Positives = 76/124 (61%)
Frame = +2 / +2
Query: 305 HI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHAPEAALHWVIPIA 484
+I +++I+ WS IP SLDL A Q + ++I K+LVV KI+ SLHA A L W+IPIA
Sbjct: 371 NIKLVYILQWSHSFIPNSLDLRAQQSPMTKSIQLKNLVVSKIESSLHASHAPLDWIIPIA 550
Query: 485 PTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLREX 664
T A N++ + PPL+ ++ ++LHHL I I P M ++ ILN +LV + LR+
Sbjct: 551 TTRFATNEMGDKWPPLITQSRMILLHHLLIPIHQARPIPMQIILILNINLVHPLILLRKQ 730
Query: 665 XXXQ 676
Q
Sbjct: 731 QVDQ 742
>gb|CK092568.1|CK092568 G087P77.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P77 3', mRNA sequence
Length = 747
Score = 221 bits (476), Expect = 5e-057
Identities = 83/122 (68%), Positives = 97/122 (79%)
Frame = -2 / -2
Query: 658 SQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSY 479
SQ D KV+IEN YY HG+WA VD+Y M+E + GLGDERWPFVTHFVGCKPCGSY
Sbjct: 713 SQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSY 534
Query: 478 GDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKA 299
GDYPVERCLRSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 533 GDYPVERCLRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIRR 354
Query: 298 KI 293
+
Sbjct: 353 PV 348
Score = 127 bits (271), Expect = 1e-028
Identities = 61/89 (68%), Positives = 64/89 (71%)
Frame = +3 / +1
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL+ RSTG*SP*LP GLHPTK VT GH SSP P FSII SY
Sbjct: 451 PYSLRTWLSAKLKALSMLLKHRSTG*SP*LPQGLHPTKWVTNGHLSSPNPG*YFSIISSY 630
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFCES 662
LST AQ PC * FS+ TL SFCE+
Sbjct: 631 LSTKPAQYPCK*Y*FSI*TLSIH*SFCEA 717
Score = 105 bits (224), Expect = 3e-022
Identities = 47/115 (40%), Positives = 75/115 (65%)
Frame = +2 / +3
Query: 314 VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHAPEAALHWVIPIAPTW 493
+++++ WS LIP SLDL A Q + ++I K LV+ KI+ SLHA +A L+ +IPIAPT
Sbjct: 369 LVYVLQWSHSLIPNSLDLRA*QSPMTKSIQLKDLVISKIESSLHASQAPLNRIIPIAPTR 548
Query: 494 LAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLR 658
APNK+ ++ PPL+ ++ ++ +HL I I P + ++ ILN +L+ + LR
Sbjct: 549 FAPNKMGNKWPPLITQSWMILFNHLLIPIHQTRPIPVQIILILNINLIHPLILLR 713
>gb|CK115173.1|CK115173 Y004D03 Populus infected leaf substracted cDNA library Populus
tremula cDNA clone Y004D03 5', mRNA sequence
Length = 518
Score = 219 bits (472), Expect = 2e-056
Identities = 82/121 (67%), Positives = 96/121 (79%)
Frame = -2 / +3
Query: 655 QXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYG 476
Q D KV+IEN YY HG+WA VD+Y M+E + GLGDERWPFVTHFVGCKPCGSYG
Sbjct: 18 QKDLWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGSYG 197
Query: 475 DYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKAK 296
DYPVERCLRSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 198 DYPVERCLRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIRRP 377
Query: 295 I 293
+
Sbjct: 378 V 380
Score = 122 bits (262), Expect = 2e-027
Identities = 59/87 (67%), Positives = 61/87 (70%)
Frame = +3 / -2
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL+ RSTG*SP*LP GLHPTK VT GH SSP P FSII SY
Sbjct: 277 PYSLRTWLSAKLKALSMLLKHRSTG*SP*LPQGLHPTKWVTNGHLSSPNPG*YFSIISSY 98
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFC 656
ST AQ PC * FS+ TL SFC
Sbjct: 97 RSTKPAQYPCK*Y*FSI*TLSIHRSFC 17
>gb|CK318227.1|CK318227 B9P06h06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 760
Score = 218 bits (470), Expect = 3e-056
Identities = 82/123 (66%), Positives = 97/123 (78%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ KV+IEN YY HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGS
Sbjct: 351 LSQKAQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGS 530
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPVE+C+RSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 531 YGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIR 710
Query: 301 AKI 293
+
Sbjct: 711 RPV 719
Score = 117 bits (250), Expect = 7e-026
Identities = 59/89 (66%), Positives = 61/89 (68%)
Frame = +3 / -1
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL STG*SP*LP GL PTK*VT GH SSP P FSII SY
Sbjct: 616 PYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTK*VTNGHLSSPSPG*YFSIISSY 437
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFCES 662
ST AQ PC * FS+ TL +FCES
Sbjct: 436 RSTRPAQYPCK*Y*FSI*TLSIH*AFCES 350
Score = 108 bits (231), Expect = 3e-023
Identities = 52/124 (41%), Positives = 76/124 (61%)
Frame = +2 / -3
Query: 305 HI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHAPEAALHWVIPIA 484
+I +++I+ WS +P SLDL A Q + ++I K+LVV KI+ SLHA A L W+IPIA
Sbjct: 707 NIKLVYILQWSHSFVPNSLDLRAQQSPMTKSIQLKNLVVSKIESSLHASHALLDWIIPIA 528
Query: 485 PTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLREX 664
T A N++S + PPL+ ++ ++LHHL I I P M ++ ILN +LV LR+
Sbjct: 527 TTRFATNEMSDKWPPLITQSRMILLHHLLIPIHQARPIPMQIILILNINLVHPLSLLRKQ 348
Query: 665 XXXQ 676
Q
Sbjct: 347 QVDQ 336
>gb|CV229369.1|CV229369 WS01913.B21_B10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_B10 3', mRNA sequence
Length = 817
Score = 218 bits (470), Expect = 3e-056
Identities = 82/123 (66%), Positives = 97/123 (78%)
Frame = -2 / -1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ KV+IEN YY HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGS
Sbjct: 652 LSQKAQWMDKVYIENQYYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGS 473
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPVE+C+RSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 472 YGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIR 293
Query: 301 AKI 293
+
Sbjct: 292 RPV 284
Score = 117 bits (250), Expect = 7e-026
Identities = 59/89 (66%), Positives = 61/89 (68%)
Frame = +3 / +3
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL STG*SP*LP GL PTK*VT GH SSP P FSII SY
Sbjct: 387 PYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTK*VTNGHLSSPSPG*YFSIISSY 566
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFCES 662
ST AQ PC * FS+ TL +FCES
Sbjct: 567 RSTRPAQYPCK*Y*FSI*TLSIH*AFCES 653
Score = 108 bits (231), Expect = 3e-023
Identities = 52/124 (41%), Positives = 76/124 (61%)
Frame = +2 / +2
Query: 305 HI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHAPEAALHWVIPIA 484
+I +++I+ WS +P SLDL A Q + ++I K+LVV KI+ SLHA A L W+IPIA
Sbjct: 296 NIKLVYILQWSHSFVPNSLDLRAQQSPMTKSIQLKNLVVSKIESSLHASHALLDWIIPIA 475
Query: 485 PTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLREX 664
T A N++S + PPL+ ++ ++LHHL I I P M ++ ILN +LV LR+
Sbjct: 476 TTRFATNEMSDKWPPLITQSRMILLHHLLIPIHQARPIPMQIILILNINLVHPLSLLRKQ 655
Query: 665 XXXQ 676
Q
Sbjct: 656 QVDQ 667
>gb|DN491794.1|DN491794 V020F03.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V020F03 3', mRNA sequence
Length = 685
Score = 218 bits (470), Expect = 3e-056
Identities = 82/123 (66%), Positives = 97/123 (78%)
Frame = -2 / -1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ KV+IEN YY HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGS
Sbjct: 457 LSQKAQWMDKVYIENQYYLHGYWAGLVDRYEQMMEKYHPGLGDERWPFVTHFVGCKPCGS 278
Query: 481 YGDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMK 302
YGDYPVE+C+RSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++
Sbjct: 277 YGDYPVEQCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIR 98
Query: 301 AKI 293
+
Sbjct: 97 RPV 89
Score = 114 bits (244), Expect = 5e-025
Identities = 58/89 (65%), Positives = 60/89 (67%)
Frame = +3 / +3
Query: 396 PYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSY 575
PYS TWLSAKL A SMLL STG*SP*LP GL PTK VT GH SSP P FSII SY
Sbjct: 192 PYSLRTWLSAKLKALSMLLMHCSTG*SP*LPQGLQPTKWVTNGHLSSPNPG*YFSIICSY 371
Query: 576 LSTXXAQKPCX**EFSMNTLXXXXSFCES 662
ST AQ PC * FS+ TL +FCES
Sbjct: 372 RSTRPAQYPCK*Y*FSI*TLSIH*AFCES 458
Score = 110 bits (234), Expect = 1e-023
Identities = 51/124 (41%), Positives = 76/124 (61%)
Frame = +2 / +2
Query: 305 HI*VLHIINWSSCLIPESLDLGAFQPLV*ETI*PKHLVVGKIKRSLHAPEAALHWVIPIA 484
+I +++I+ WS +P SLDL A QP + ++I K+LVV KI+ SLHA A L W+IPIA
Sbjct: 101 NIKLVYILQWSHSFVPNSLDLRAQQPPMTKSIQLKNLVVSKIESSLHASHALLDWIIPIA 280
Query: 485 PTWLAPNKVSHERPPLVAEAXXVILHHLXILIXXXSPEAMXVVGILNEHLVXXXVXLREX 664
T A N++ + PPL+ ++ ++LHHL I I P M ++ ILN +L+ LR+
Sbjct: 281 TTRFATNEMGDKWPPLITQSRMILLHHLLIPIHQARPIPMQIILILNINLIHPLSLLRKQ 460
Query: 665 XXXQ 676
Q
Sbjct: 461 QVDQ 472
>gb|CA926079.1|CA926079 MTU7TL.P9.H01 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 188 bits (404), Expect = 4e-047
Identities = 66/118 (55%), Positives = 88/118 (74%)
Frame = -2 / -3
Query: 658 SQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSY 479
+Q D KV++EN+YY HG+W VD+Y M+EN+ GLGD RWP VTHFVGCKPCG +
Sbjct: 484 TQRDKWGDKVYLENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKF 305
Query: 478 GDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDY VERCL+ M+RAFNF DNQ+L++YGF+HK L S ++KR R++T P+ + L +
Sbjct: 304 GDYSVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRRVKRVRNETGNPLEAKDELGL 131
>gb|CX656670.1|CX656670 PO02021H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02021H09 5', mRNA sequence
Length = 630
Score = 179 bits (386), Expect = 1e-044
Identities = 64/118 (54%), Positives = 87/118 (73%)
Frame = -2 / +3
Query: 658 SQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSY 479
+Q D KV+++N+YY HG+W VD+Y M+EN+ GLGD R P VTHFVGCKPCG +
Sbjct: 141 TQRDKWGDKVYLKNAYYLHGYWGILVDRYEEMIENYHPGLGDHRRPLVTHFVGCKPCGKF 320
Query: 478 GDYPVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
GDY VERCL+ M+RAFNF DNQ+L++YGF+HK L S ++KR R++T P+ + L +
Sbjct: 321 GDYSVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRRVKRVRNETGNPLEAKDELGL 494
>gb|AI161661.1|AI161661 A004P72U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 598
Score = 178 bits (384), Expect = 2e-044
Identities = 61/107 (57%), Positives = 82/107 (76%)
Frame = -2 / +1
Query: 625 IENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRS 446
+EN+YY HG+W VD+Y M+EN+ GLGD RWP VTHFVGCKPCG +GDY VERCL+
Sbjct: 25 LENAYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLKQ 204
Query: 445 MERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
M+RAFNF DNQ+L++YGF+HK L S +++R R++T P+ + L +
Sbjct: 205 MDRAFNFGDNQILQIYGFTHKSLASRRVRRVRNETNNPLEVKDELGL 345
>gb|CN549763.1|CN549763 GQ0242.B3_I03 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_I03 5', mRNA sequence
Length = 504
Score = 156 bits (336), Expect = 1e-037
Identities = 55/93 (59%), Positives = 73/93 (78%)
Frame = -2 / +2
Query: 583 VDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLR 404
VD+Y M+EN+ GLGD RWP VTHFVGCKPCG +GDY VERCL+ M+RAFNF DNQ+L+
Sbjct: 5 VDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYSVERCLKQMDRAFNFGDNQILQ 184
Query: 403 LYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
+YGF+HK L S +++R R++TT P+ + L +
Sbjct: 185 IYGFTHKSLASRRVRRVRNETTNPLEVKDELGL 283
>gb|BI129236.1|BI129236 G087P77Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 393
Score = 146 bits (313), Expect = 2e-034
Identities = 54/73 (73%), Positives = 59/73 (80%)
Frame = -2 / +3
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LSQ D KV+IEN YY HG+WA VD+Y M+E + GLGDERWPFVTHFVGCKPCGS
Sbjct: 174 LSQKDQWMDKVYIENQYYLHGYWAGLVDRYEEMIEKYHPGLGDERWPFVTHFVGCKPCGS 353
Query: 481 YGDYPVERCLRSM 443
YGDYPVERCLRSM
Sbjct: 354 YGDYPVERCLRSM 392
Score = 101 bits (216), Expect = 4e-021
Identities = 50/73 (68%), Positives = 52/73 (71%)
Frame = +3 / -3
Query: 444 MLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSIIXSYLSTXXAQKPCX**EFS 623
MLL+ RSTG*SP*LP GLHPTK VT GH SSP P FSII SYLST AQ PC * FS
Sbjct: 391 MLLKHRSTG*SP*LPQGLHPTKWVTNGHLSSPNPG*YFSIISSYLSTKPAQYPCK*Y*FS 212
Query: 624 MNTLXXXXSFCES 662
+ TL SFCES
Sbjct: 211 I*TLSIH*SFCES 173
>gb|CK092956.1|CK092956 G101P62.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G101P62 3', mRNA sequence
Length = 591
Score = 100 bits (213), Expect = 1e-020
Identities = 38/59 (64%), Positives = 48/59 (81%)
Frame = -2 / -1
Query: 469 PVERCLRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDMKAKI 293
PVERC+RSMERAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D++ +
Sbjct: 588 PVERCMRSMERAFNFADNQVLKLYGFGHRGLLSPKIKRIRNETVTPLEYVDQFDIRRPV 412
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 287,221,949
Number of Sequences: 369679
Number of extensions: 3556054
Number of successful extensions: 35449
Number of sequences better than 1.0e-020: 13
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 8517171066
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)