TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-... 138 4e-032
gb|DT517590.1|DT517590 WS02434.B21_L22 PTxD-ICC-N-A-14 Popu... 135 3e-031
gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA librar... 134 4e-031
gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library P... 134 4e-031
gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDN... 134 4e-031
gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Po... 134 4e-031
gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus... 133 8e-031
gb|DT507274.1|DT507274 WS02417.BR_N05 PTxD-ICC-N-A-14 Popul... 133 8e-031
gb|DT511911.1|DT511911 WS02417.B21_N05 PTxD-ICC-N-A-14 Popu... 133 8e-031
gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, compl... 133 8e-031
gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, compl... 133 8e-031
gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, compl... 133 8e-031
gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, compl... 133 8e-031
gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Po... 132 2e-030
gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cD... 127 5e-029
gb|DT482700.1|DT482700 WS02520.B21_I18 PT-MB-N-A-15 Populus... 121 4e-027
gb|CV258561.1|CV258561 WS0249.B21_O05 PTxD-ICC-N-A-14 Popul... 114 5e-025
>gb|AJ774571.1|AJ774571 AJ774571 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021H08F1, mRNA sequence
Length = 667
Score = 138 bits (295), Expect = 4e-032
Identities = 53/66 (80%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKVEYL RRPGDYAEVYSDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 372 VKACKKATGVDIKVEYLPRRPGDYAEVYSDPSKIYHELNWTAQYTDLQKSLQTAWRWQKS 551
Query: 189 HPNGYG 206
H NGYG
Sbjct: 552 HQNGYG 569
Score = 108 bits (231), Expect = 3e-023
Identities = 47/73 (64%), Positives = 53/73 (72%)
Frame = -1 / -1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSLYTSA*SPG R +YSTLI
Sbjct: 583 ITKGDPYPF*CDFCHLHAVCKLFWRSVYCAVQFSSW*IFDGSLYTSA*SPGRRGKYSTLI 404
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 403 STPVAFLHALTNS 365
>gb|DT517590.1|DT517590 WS02434.B21_L22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_L22 3', mRNA sequence
Length = 484
Score = 135 bits (289), Expect = 3e-031
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3 / -2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 462 VKACKKATGVDIKVDYLPRRPGDYAEVFSDPSKIYRELNWTAQYTDLQKSLQTAWRWQKS 283
Query: 189 HPNGYG 206
H NGYG
Sbjct: 282 HQNGYG 265
>gb|BI131118.1|BI131118 G115P63Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 550
Score = 134 bits (288), Expect = 4e-031
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 138 VKACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQTAWRWQKS 317
Query: 189 HPNGYG 206
H NGYG
Sbjct: 318 HQNGYG 335
>gb|BU809199.1|BU809199 UL54PH12 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 520
Score = 134 bits (288), Expect = 4e-031
Identities = 50/66 (75%), Positives = 59/66 (89%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+++LNWTAQYTDL +SL AW+WQK+
Sbjct: 224 VKACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINLDLNWTAQYTDLHKSLQTAWRWQKS 403
Query: 189 HPNGYG 206
H NGYG
Sbjct: 404 HQNGYG 421
>gb|CK092088.1|CK092088 G065P17.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G065P17 3', mRNA sequence
Length = 834
Score = 134 bits (288), Expect = 4e-031
Identities = 50/66 (75%), Positives = 59/66 (89%)
Frame = +3 / -1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+++LNWTAQYTDL +SL AW+WQK+
Sbjct: 507 VKACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINLDLNWTAQYTDLQKSLQTAWRWQKS 328
Query: 189 HPNGYG 206
H NGYG
Sbjct: 327 HQNGYG 310
>gb|CX655000.1|CX655000 PO01003F05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01003F05 5', mRNA sequence
Length = 649
Score = 134 bits (288), Expect = 4e-031
Identities = 51/66 (77%), Positives = 58/66 (87%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 142 VKACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQTAWRWQKS 321
Query: 189 HPNGYG 206
H NGYG
Sbjct: 322 HQNGYG 339
>gb|DT489454.1|DT489454 WS02542.B21_E12 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_E12 3', mRNA sequence
Length = 934
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / -3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 455 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 276
Query: 189 HPNGYG 206
H NGYG
Sbjct: 275 HQNGYG 258
>gb|DT507274.1|DT507274 WS02417.BR_N05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N05 5', mRNA sequence
Length = 558
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 77 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 256
Query: 189 HPNGYG 206
H NGYG
Sbjct: 257 HQNGYG 274
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / -1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 288 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 109
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 108 STPVAFLHACTNS 70
>gb|DT511911.1|DT511911 WS02417.B21_N05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_N05 3', mRNA sequence
Length = 558
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / -2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 482 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 303
Query: 189 HPNGYG 206
H NGYG
Sbjct: 302 HQNGYG 285
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / +1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 271 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 450
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 451 STPVAFLHACTNS 489
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
Length = 101981
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 36262 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 36441
Query: 189 HPNGYG 206
H NGYG
Sbjct: 36442 HQNGYG 36459
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / -1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 36473 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 36294
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 36293 STPVAFLHACTNS 36255
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
Length = 152544
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 85409 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 85588
Query: 189 HPNGYG 206
H NGYG
Sbjct: 85589 HQNGYG 85606
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / -1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 85620 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 85441
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 85440 STPVAFLHACTNS 85402
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence
Length = 106128
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / -3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 13501 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 13322
Query: 189 HPNGYG 206
H NGYG
Sbjct: 13321 HQNGYG 13304
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / +3
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 13290 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 13469
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 13470 STPVAFLHACTNS 13508
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence
Length = 148552
Score = 133 bits (286), Expect = 8e-031
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +3 / -3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+
Sbjct: 14147 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKS 13968
Query: 189 HPNGYG 206
H NGYG
Sbjct: 13967 HQNGYG 13950
Score = 101 bits (215), Expect = 5e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / +1
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 13936 ITKGDPYPF*CDFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 14115
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 14116 STPVAFLHACTNS 14154
>gb|CK110281.1|CK110281 N055B12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N055B12 5', mRNA sequence
Length = 885
Score = 132 bits (283), Expect = 2e-030
Identities = 50/66 (75%), Positives = 57/66 (86%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+ACKKATG IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQ +
Sbjct: 492 VQACKKATGVDIKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQNS 671
Query: 189 HPNGYG 206
H NGYG
Sbjct: 672 HQNGYG 689
Score = 101 bits (216), Expect = 3e-021
Identities = 45/73 (61%), Positives = 51/73 (69%)
Frame = -1 / -3
Query: 220 LNQAGPYPFGCAFCHFHAWARLWPRSVYWAVQLSSMWIFDGSLYTSA*SPGLRARYSTLI 41
+ + PYPF C FCH HA +L+ RSVY AVQ SS IFDGSL TSA*SPG R + STLI
Sbjct: 703 ITKGDPYPF*CEFCHLHATCKLFWRSVYCAVQFSSRLIFDGSLNTSA*SPGRRGK*STLI 524
Query: 40 EAPVAFLQASTRA 2
PVAFL A T +
Sbjct: 523 STPVAFLHACTNS 485
>gb|BU819793.1|BU819793 UA47BPF05 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 609
Score = 127 bits (273), Expect = 5e-029
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV+YL RRPGDYAEV+SDPSKI ELNWTAQ TDL +SL AW+WQK+
Sbjct: 317 VHACKKATGVDIKVDYLPRRPGDYAEVFSDPSKIIRELNWTAQNTDLQKSLQVAWRWQKS 496
Query: 189 HPNGYG 206
H NGYG
Sbjct: 497 HQNGYG 514
>gb|DT482700.1|DT482700 WS02520.B21_I18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_I18 3', mRNA sequence
Length = 753
Score = 121 bits (259), Expect = 4e-027
Identities = 46/66 (69%), Positives = 53/66 (80%)
Frame = +3 / -1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V+A KKATG IK++YL RRPGDYAEV+SDPSKI ELNW AQY D +SL AW+WQK+
Sbjct: 585 VKASKKATGVDIKIDYLPRRPGDYAEVFSDPSKIFHELNWAAQYPDFQKSLQTAWRWQKS 406
Query: 189 HPNGYG 206
H NGYG
Sbjct: 405 HQNGYG 388
>gb|CV258561.1|CV258561 WS0249.B21_O05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0249_O05 3', mRNA sequence
Length = 434
Score = 114 bits (244), Expect = 5e-025
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3 / -1
Query: 42 IKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNGYG 206
IKV+YL RRPGDYAEV+SDPSKI+ ELNWTAQYTDL +SL AW+WQK+H NGYG
Sbjct: 431 IKVDYLPRRPGDYAEVFSDPSKINRELNWTAQYTDLQKSLQVAWRWQKSHQNGYG 267
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 304,067,604
Number of Sequences: 369679
Number of extensions: 4464014
Number of successful extensions: 47090
Number of sequences better than 1.0e-020: 17
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7978729217
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)