TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN519224.1|CN519224 GQ0101.B3_J11 GQ010 Populus trichoca... 160 3e-068
gb|CV233955.1|CV233955 WS01213.B21_A11 PT-GT-FL-A-3 Populus... 149 9e-066
gb|AJ777480.1|AJ777480 AJ777480 Populus euphratica root 3-6... 159 5e-063
gb|DT497514.1|DT497514 WS01126.BR_L05 PT-P-FL-A-2 Populus t... 160 9e-057
gb|CV238945.1|CV238945 WS0128.B21.1_M03 PT-GT-FL-A-3 Populu... 160 6e-056
gb|DT523980.1|DT523980 WS02041.C21.1_D03 PTxN-IB-N-A-11 Pop... 140 2e-054
gb|CV250183.1|CV250183 WS01126.B21_L05 PT-P-FL-A-2 Populus ... 160 5e-054
gb|DT524522.1|DT524522 WS02042.C21.1_O02 PTxN-IB-N-A-11 Pop... 113 5e-046
gb|CX658997.1|CX658997 PO01025B07 Poplar SC cDNA library Po... 115 6e-046
gb|DN485668.1|DN485668 N023D09.3pR Populus bark cDNA librar... 110 1e-044
gb|DN495170.1|DN495170 N023D09.5pR Populus bark cDNA librar... 110 1e-044
gb|BU813977.1|BU813977 N023D09 Populus bark cDNA library Po... 110 1e-044
gb|CV260358.1|CV260358 WS02013.B21_N17 PTxN-IB-N-A-11 Popul... 161 4e-039
gb|AC149430.1| Populus trichocarpa clone Pop1-116F13, compl... 108 1e-038
gb|CV257634.1|CV257634 WS0247.B21_D12 PTxD-ICC-N-A-14 Popul... 111 5e-037
gb|CV236572.1|CV236572 WS01224.B21.1_J18 PT-GT-FL-A-3 Popul... 143 1e-033
gb|CV264167.1|CV264167 WS02023.B21_M18 PTxN-IB-N-A-11 Popul... 126 2e-028
gb|BI072819.1|BI072819 C088P30U Populus strain T89 leaves P... 111 4e-024
gb|DN488983.1|DN488983 S065E02.3pR Populus imbibed seed cDN... 110 8e-024
gb|DN498720.1|DN498720 S065E02.5pR Populus imbibed seed cDN... 110 8e-024
>gb|CN519224.1|CN519224 GQ0101.B3_J11 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0101_J11 5', mRNA sequence
Length = 566
Score = 160 bits (343), Expect(2) = 3e-068
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL++PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P
Sbjct: 253 NLKNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIP 432
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 433 KEALSCGLTGKRFMTGSHL 489
Score = 118 bits (253), Expect(2) = 3e-068
Identities = 44/63 (69%), Positives = 50/63 (79%)
Frame = -3 / +1
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E F YDV PP NPNTT G VY+L + +TVDV+LQNANAL+ NVSE+HPWHLHGHDF
Sbjct: 19 EDFPGHYDVMKPPVNPNTTTGSGVYMLGYYSTVDVILQNANALTENVSEIHPWHLHGHDF 198
Query: 401 WVL 393
WVL
Sbjct: 199 WVL 207
Score = 104 bits (221), Expect(2) = 9e-034
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / -1
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK TP+P +CGSIWQWKAHTPGLSATN S VHP G +TAVF
Sbjct: 449 QERASLGILATCWTPSAKTTPIPKCKCGSIWQWKAHTPGLSATNLSAVHP*GNITAVFL* 270
Query: 325 GG 330
GG
Sbjct: 269 GG 264
Score = 59.3 bits (123), Expect(2) = 9e-034
Identities = 29/55 (52%), Positives = 34/55 (61%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTS 561
TQKS P +CHGC SLT +A AF + TSTV+ T P VVLG GG +TS
Sbjct: 203 TQKS*PCKCHGCISLTFSVNAFAFCNITSTVL**PSM*TPLPVVVLGLTGGFITS 39
>gb|CV233955.1|CV233955 WS01213.B21_A11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01213_A11 3', mRNA sequence
Length = 784
Score = 149 bits (320), Expect(2) = 9e-066
Identities = 54/79 (68%), Positives = 63/79 (79%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
N+++PP RN+AVIFPYGWT LRFVADNPGVWAFHCHIEPHLHMGMGV+ AE V + K+P
Sbjct: 521 NMKNPPYRNSAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVLAEGVQRLPKIP 342
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G +L
Sbjct: 341 KEALSCGLTGKKFMTGNNL 285
Score = 121 bits (258), Expect(2) = 9e-066
Identities = 44/63 (69%), Positives = 54/63 (85%)
Frame = -3 / -3
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E+F +YDV PP NPNTT G+ VY+L++ +TVDV+LQNANAL+ NVSE+HPWHLHGHDF
Sbjct: 755 ESFPVQYDVMKPPGNPNTTTGNGVYMLSYYSTVDVILQNANALAENVSEIHPWHLHGHDF 576
Query: 401 WVL 393
WVL
Sbjct: 575 WVL 567
Score = 103 bits (219), Expect(2) = 5e-034
Identities = 43/62 (69%), Positives = 47/62 (75%)
Frame = +1 / +1
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG L R T SAK TPMP+ +CGSIWQWKAHTPGLSATN S VHP G +TA F
Sbjct: 325 QERASLGILGRRWTPSAKTTPMPICKCGSIWQWKAHTPGLSATNLSAVHP*GNITAEFL* 504
Query: 325 GG 330
GG
Sbjct: 505 GG 510
Score = 61.1 bits (127), Expect(2) = 5e-034
Identities = 31/56 (55%), Positives = 35/56 (62%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVLGFGGGSVTSY 564
TQKS P +CHG SLT +ALAF S TSTV+ T P VVLG GG +TSY
Sbjct: 571 TQKSCPCKCHGWISLTFSANALAF*SITSTVL**LSM*TPFPVVVLGLPGGFITSY 738
>gb|AJ777480.1|AJ777480 AJ777480 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400028G09F1, mRNA sequence
Length = 601
Score = 159 bits (342), Expect(2) = 5e-063
Identities = 58/79 (73%), Positives = 65/79 (82%)
Frame = -3 / +1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL++PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V +AK+P
Sbjct: 199 NLKNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHIAKIP 378
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 379 KEALSCGLTGKRFMTGSHL 435
Score = 106 bits (226), Expect(2) = 7e-031
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / -3
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LA T SAK TP+P +CGSIWQWKAHTPGLSATN S VHPYG +TAVF
Sbjct: 395 QERASLGILAICWTPSAKTTPIPRCKCGSIWQWKAHTPGLSATNLSAVHPYGNITAVFL* 216
Query: 325 GG 330
GG
Sbjct: 215 GG 210
Score = 101 bits (216), Expect(2) = 5e-063
Identities = 37/51 (72%), Positives = 43/51 (84%)
Frame = -3 / +1
Query: 545 PPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
P N NTT G+ VY+L + +TVDV+LQNANAL NVSE+HPWHLHGHDFWVL
Sbjct: 1 PVNRNTTTGNGVYMLGYYSTVDVILQNANALKENVSEIHPWHLHGHDFWVL 153
Score = 47.3 bits (97), Expect(2) = 7e-031
Identities = 24/46 (52%), Positives = 28/46 (60%)
Frame = +1 / -3
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVVLCARTYTLSPAVVL 534
TQKS P +CHGC SLT +A AF + TSTV+ T P VVL
Sbjct: 149 TQKS*PCKCHGCISLTFSFNAFAFCNITSTVL**PSM*TPFPVVVL 12
>gb|DT497514.1|DT497514 WS01126.BR_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_L05 5', mRNA sequence
Length = 530
Score = 160 bits (343), Expect(2) = 9e-057
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL++PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P
Sbjct: 147 NLKNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIP 326
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 327 KEALSCGLTGKRFMTGSHL 383
Score = 104 bits (221), Expect(2) = 1e-029
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / -2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK TP+P +CGSIWQWKAHTPGLSATN S VHP G +TAVF
Sbjct: 343 QERASLGILATCWTPSAKTTPIPKCKCGSIWQWKAHTPGLSATNLSAVHP*GNITAVFL* 164
Query: 325 GG 330
GG
Sbjct: 163 GG 158
Score = 80.3 bits (169), Expect(2) = 9e-057
Identities = 28/33 (84%), Positives = 32/33 (96%)
Frame = -3 / +3
Query: 491 TTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+TVDV+LQNANAL+ NVSE+HPWHLHGHDFWVL
Sbjct: 3 STVDVILQNANALTENVSEIHPWHLHGHDFWVL 101
Score = 45.5 bits (93), Expect(2) = 1e-029
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1 / -2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVV 492
TQKS P +CHGC SLT +A AF + TSTV+
Sbjct: 97 TQKS*PCKCHGCISLTFSVNAFAFCNITSTVL 2
>gb|CV238945.1|CV238945 WS0128.B21.1_M03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M03 3', mRNA sequence
Length = 591
Score = 160 bits (343), Expect(2) = 6e-056
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL++PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P
Sbjct: 452 NLKNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIP 273
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 272 KEALSCGLTGKRFMTGSHL 216
Score = 104 bits (221), Expect(2) = 5e-029
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / +1
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK TP+P +CGSIWQWKAHTPGLSATN S VHP G +TAVF
Sbjct: 256 QERASLGILATCWTPSAKTTPIPKCKCGSIWQWKAHTPGLSATNLSAVHP*GNITAVFL* 435
Query: 325 GG 330
GG
Sbjct: 436 GG 441
Score = 77.6 bits (163), Expect(2) = 6e-056
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = -3 / -2
Query: 485 VDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
VDV+LQNANAL+ NVSE+HPWHLHGHDFWVL
Sbjct: 590 VDVILQNANALTENVSEIHPWHLHGHDFWVL 498
Score = 43.2 bits (88), Expect(2) = 5e-029
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +1 / +1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTST 486
TQKS P +CHGC SLT +A AF + TST
Sbjct: 502 TQKS*PCKCHGCISLTFSVNAFAFCNITST 591
>gb|DT523980.1|DT523980 WS02041.C21.1_D03 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02041_D03 3', mRNA sequence
Length = 672
Score = 140 bits (300), Expect(3) = 2e-054
Identities = 51/79 (64%), Positives = 61/79 (77%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL +PP RNTA+IFPY WT + FVADNP +WAFHCHIEPHLH+GMG++FAE V VA++P
Sbjct: 302 NLTNPPYRNTALIFPY*WTAMTFVADNP*LWAFHCHIEPHLHLGMGMVFAERVQHVARIP 481
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 482 KEALSCGLTGKTFMTGSHL 538
Score = 86.8 bits (183), Expect(2) = 4e-024
Identities = 38/62 (61%), Positives = 44/62 (70%)
Frame = +1 / -1
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK P+P +CGSIWQWKAH+ GLSATN VH G ++AVF
Sbjct: 498 QERASLGILATCWTRSAKTMPIPKCKCGSIWQWKAHSHGLSATNVIAVHQ*GNISAVFL* 319
Query: 325 GG 330
GG
Sbjct: 318 GG 313
Score = 82.6 bits (174), Expect(3) = 2e-054
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = -3 / +2
Query: 521 GDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
G VY+L + +T+DV+LQNANAL+ NVSE+HPWHLHG DFWVL
Sbjct: 128 GIGVYMLGYYSTLDVILQNANALTENVSEIHPWHLHGLDFWVL 256
Score = 44.1 bits (90), Expect(2) = 4e-024
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +1 / -1
Query: 397 TQKSWPWRCHGCTSLTLRDSALAFWSSTSTVV 492
TQKS P +CHGC SLT +A AF + TS+V+
Sbjct: 252 TQKSRPCKCHGCISLTFSVNAFAFCNITSSVL 157
Score = 28.6 bits (56), Expect(3) = 2e-054
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3 / +1
Query: 581 ETFSREYDVTLPPPNPNTT 525
E F YDV PP NPNT+
Sbjct: 67 EDFPGHYDVMKPPFNPNTS 123
>gb|CV250183.1|CV250183 WS01126.B21_L05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_L05 3', mRNA sequence
Length = 513
Score = 160 bits (343), Expect(2) = 5e-054
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = -3 / -1
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL++PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P
Sbjct: 384 NLKNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIP 205
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 204 KEALSCGLTGKRFMTGSHL 148
Score = 104 bits (221), Expect(2) = 2e-027
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / +2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK TP+P +CGSIWQWKAHTPGLSATN S VHP G +TAVF
Sbjct: 188 QERASLGILATCWTPSAKTTPIPKCKCGSIWQWKAHTPGLSATNLSAVHP*GNITAVFL* 367
Query: 325 GG 330
GG
Sbjct: 368 GG 373
Score = 71.2 bits (149), Expect(2) = 5e-054
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = -3 / -1
Query: 476 LLQNANALSRNVSEVHPWHLHGHDFWVL 393
+LQNANAL+ NVSE+HPWHLHGHDFWVL
Sbjct: 513 ILQNANALTENVSEIHPWHLHGHDFWVL 430
Score = 38.2 bits (77), Expect(2) = 2e-027
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = +1 / +2
Query: 397 TQKSWPWRCHGCTSLTLRDSALAF 468
TQKS P +CHGC SLT +A AF
Sbjct: 434 TQKS*PCKCHGCISLTFSVNAFAF 505
>gb|DT524522.1|DT524522 WS02042.C21.1_O02 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_O02 3', mRNA sequence
Length = 886
Score = 113 bits (241), Expect(2) = 5e-046
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + P+GWT LRF ADNPG WAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 387 NLVDPIMKNTVPVHPFGWTALRFKADNPGAWAFHCHIESHFFMGMGVVFEEGIERVGKLP 208
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 207 SSIMGCG 187
Score = 91.3 bits (193), Expect(2) = 5e-046
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -3 / -2
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ YD+ N N T D +Y L N+TVD++LQNAN ++ N SE HPWHLHGHDFWVL
Sbjct: 612 KNYDIFARQNNTNATTSDAIYRLQLNSTVDIILQNANTMNPNNSETHPWHLHGHDFWVL 436
>gb|CX658997.1|CX658997 PO01025B07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025B07 5', mRNA sequence
Length = 673
Score = 115 bits (245), Expect(2) = 6e-046
Identities = 40/67 (59%), Positives = 50/67 (74%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + P+GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 411 NLVDPIMKNTVPVHPFGWTALRFKADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLP 590
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 591 SSIMGCG 611
Score = 89.0 bits (188), Expect(2) = 6e-046
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -3 / +3
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ YD+ N N T D +Y L N+TVD++LQNAN+ + N SE HPWHLHGHDFWVL
Sbjct: 186 KNYDIFAVQNNTNGTTSDAIYRLQLNSTVDIILQNANSRNPNNSETHPWHLHGHDFWVL 362
>gb|DN485668.1|DN485668 N023D09.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N023D09 3', mRNA sequence
Length = 782
Score = 110 bits (235), Expect(2) = 1e-044
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + +GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 357 NLVDPIMKNTVPVHLFGWTALRFKADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLP 178
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 177 SSIMGCG 157
Score = 89.0 bits (188), Expect(2) = 1e-044
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -3 / -3
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ YD+ N N T D +Y L N+TVD++LQNAN+ + N SE HPWHLHGHDFWVL
Sbjct: 582 KNYDIFAVQNNTNGTTSDAIYRLQLNSTVDIILQNANSRNPNNSETHPWHLHGHDFWVL 406
>gb|DN495170.1|DN495170 N023D09.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N023D09 5', mRNA sequence
Length = 624
Score = 110 bits (235), Expect(2) = 1e-044
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + +GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 369 NLVDPIMKNTVPVHLFGWTALRFKADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLP 548
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 549 SSIMGCG 569
Score = 89.0 bits (188), Expect(2) = 1e-044
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -3 / +3
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ YD+ N N T D +Y L N+TVD++LQNAN+ + N SE HPWHLHGHDFWVL
Sbjct: 144 KNYDIFAVQNNTNGTTSDAIYRLQLNSTVDIILQNANSRNPNNSETHPWHLHGHDFWVL 320
>gb|BU813977.1|BU813977 N023D09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 622
Score = 110 bits (235), Expect(2) = 1e-044
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + +GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 365 NLVDPIMKNTVPVHLFGWTALRFKADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLP 544
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 545 SSIMGCG 565
Score = 89.0 bits (188), Expect(2) = 1e-044
Identities = 33/59 (55%), Positives = 41/59 (69%)
Frame = -3 / +2
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
+ YD+ N N T D +Y L N+TVD++LQNAN+ + N SE HPWHLHGHDFWVL
Sbjct: 140 KNYDIFAVQNNTNGTTSDAIYRLQLNSTVDIILQNANSRNPNNSETHPWHLHGHDFWVL 316
>gb|CV260358.1|CV260358 WS02013.B21_N17 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_N17 3', mRNA sequence
Length = 434
Score = 161 bits (346), Expect = 4e-039
Identities = 60/79 (75%), Positives = 65/79 (82%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NLR+PP RNTAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P
Sbjct: 372 NLRNPPYRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIP 193
Query: 161 NEAVSCGAXATALMAGGHL 105
EA+SCG M G HL
Sbjct: 192 KEALSCGLTGKRFMTGSHL 136
Score = 104 bits (221), Expect = 7e-022
Identities = 44/62 (70%), Positives = 48/62 (77%)
Frame = +1 / +2
Query: 145 QDTASLGTLATRSTASAKMTPMPMWRCGSIWQWKAHTPGLSATNRSIVHPYGKMTAVFRS 324
Q+ ASLG LAT T SAK TP+P +CGSIWQWKAHTPGLSATN S VHP G +TAVF
Sbjct: 176 QERASLGILATCWTPSAKTTPIPKCKCGSIWQWKAHTPGLSATNLSAVHP*GNITAVFL* 355
Query: 325 GG 330
GG
Sbjct: 356 GG 361
>gb|AC149430.1| Populus trichocarpa clone Pop1-116F13, complete sequence
Length = 114875
Score = 108 bits (230), Expect(3) = 1e-038
Identities = 37/68 (54%), Positives = 48/68 (70%)
Frame = -3 / -3
Query: 344 LNLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKV 165
LNL +P ++NT +FPYGWT LRF DNPG+W FHCHIE H ++GM V+F D+V K
Sbjct: 23670 LNLENPIMKNTVPLFPYGWTALRFRTDNPGIWLFHCHIEAHFYLGMLVLFESGSDMVTKP 23491
Query: 164 PNEAVSCG 141
P + + CG
Sbjct: 23490 PQQNMGCG 23467
Score = 46.4 bits (95), Expect(3) = 1e-038
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = -3 / -3
Query: 440 SEVHPWHLHGHDFWVL 393
SE HPWHLHGH+FWVL
Sbjct: 23757 SETHPWHLHGHNFWVL 23710
Score = 42.8 bits (87), Expect(3) = 1e-038
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3 / -3
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANAL 453
E + Y++ P N N T ++Y L N TVD++LQNA +
Sbjct: 23895 EDYDHSYNIYEIPENTNATTSTSIYRLPFNKTVDIILQNAKGM 23767
>gb|CV257634.1|CV257634 WS0247.B21_D12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_D12 3', mRNA sequence
Length = 686
Score = 111 bits (237), Expect(2) = 5e-037
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = -3 / -3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + P GWT LRF ADNPG WAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 504 NLVDPIMKNTVPVHPLGWTALRFKADNPGAWAFHCHIESHFFMGMGVVFEEGIERVGKLP 325
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 324 SSIMGCG 304
Score = 62.9 bits (131), Expect(2) = 5e-037
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = -3 / -3
Query: 476 LLQNANALSRNVSEVHPWHLHGHDFWVL 393
+LQNAN ++ N SE HPWHLHGHDFWVL
Sbjct: 636 ILQNANTMNPNNSETHPWHLHGHDFWVL 553
>gb|CV236572.1|CV236572 WS01224.B21.1_J18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01224_J18 3', mRNA sequence
Length = 356
Score = 143 bits (306), Expect = 1e-033
Identities = 53/70 (75%), Positives = 57/70 (81%)
Frame = -3 / -1
Query: 314 TAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAX 135
TAVIFPYGWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P EA+SCG
Sbjct: 356 TAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIPKEALSCGLT 177
Query: 134 ATALMAGGHL 105
M G HL
Sbjct: 176 GKRFMTGSHL 147
>gb|CV264167.1|CV264167 WS02023.B21_M18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_M18 3', mRNA sequence
Length = 338
Score = 126 bits (269), Expect = 2e-028
Identities = 46/63 (73%), Positives = 50/63 (79%)
Frame = -3 / -1
Query: 293 GWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVSCGAXATALMAG 114
GWT LRFVADNPGVWAFHCHIEPHLH+GMGV+FAE V VAK+P EA+SCG M G
Sbjct: 338 GWTALRFVADNPGVWAFHCHIEPHLHLGMGVVFAEGVQHVAKIPKEALSCGLTGKRFMTG 159
Query: 113 GHL 105
HL
Sbjct: 158 SHL 150
>gb|BI072819.1|BI072819 C088P30U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 388
Score = 111 bits (237), Expect = 4e-024
Identities = 41/63 (65%), Positives = 47/63 (74%)
Frame = -3 / +1
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E F YDV PP N NT G+ VY+L + +TVDV+LQNAN L NVSE+HPWHLHGHDF
Sbjct: 193 EDFPEHYDVMKPPVNNNTNTGNGVYMLGYYSTVDVILQNANVLKENVSEIHPWHLHGHDF 372
Query: 401 WVL 393
WVL
Sbjct: 373 WVL 381
>gb|DN488983.1|DN488983 S065E02.3pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S065E02 3', mRNA sequence
Length = 440
Score = 110 bits (235), Expect = 8e-024
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + +GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 409 NLVDPIMKNTVPVHLFGWTALRFKADNPGVWAFHCHIESHFSMGMGVVFEEGIERVGKLP 230
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 229 SSIMGCG 209
>gb|DN498720.1|DN498720 S065E02.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S065E02 5', mRNA sequence
Length = 469
Score = 110 bits (235), Expect = 8e-024
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL DP ++NT + +GWT LRF ADNPGVWAFHCHIE H MGMGV+F E ++ V K+P
Sbjct: 32 NLVDPIMKNTVPVHLFGWTALRFKADNPGVWAFHCHIESHFSMGMGVVFEEGIERVGKLP 211
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 212 SSIMGCG 232
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 214,182,172
Number of Sequences: 369679
Number of extensions: 2425640
Number of successful extensions: 41411
Number of sequences better than 1.0e-020: 22
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7489236627
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)