TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2430991.2.1
(515 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transfer... 205 5e-067
gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferas... 203 2e-066
gb|AY124702.1| Populus alba glycosyl transferase protein A ... 202 4e-066
gb|CA929288.1|CA929288 MTU2CA.P11.F04 Aspen apex cDNA Libra... 139 1e-032
gb|CX658367.1|CX658367 PO01034C09 Poplar SC cDNA library Po... 138 2e-032
gb|CA930206.1|CA930206 MTU2CA.P8.E10 Aspen apex cDNA Librar... 136 8e-032
gb|CX656687.1|CX656687 PO02022C08 Poplar SC cDNA library Po... 84 6e-030
gb|CA929157.1|CA929157 MTU2CA.P8.B11 Aspen apex cDNA Librar... 126 1e-028
gb|CF230845.1|CF230845 PtaC0014A2A0202 Poplar cDNA library ... 124 3e-028
gb|CX656981.1|CX656981 PO02029D08 Poplar SC cDNA library Po... 84 5e-028
gb|CA932946.1|CA932946 MTU5CS.P1.E05 Aspen stem cDNA Librar... 112 1e-027
gb|BP923962.1|BP923962 BP923962 full-length enriched poplar... 100 5e-022
gb|CK318880.1|CK318880 X9P04d06 Populus stem seasonal libra... 98 4e-021
>gb|AY278315.1| Populus alba ecotype 2AS11 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 205 bits (442), Expect(3) = 5e-067
Identities = 79/107 (73%), Positives = 93/107 (86%)
Frame = -2 / +1
Query: 349 VQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGM 170
+++ LRDNSLYHFCVFSDNILA SVVVNST +NS++PD VVFHLVTDE+NYA MKAWF M
Sbjct: 202 IETKLRDNSLYHFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSM 381
Query: 169 NDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRG 29
N +RGVT+E+QK EDF WLNASYVPVLKQLQ++ TQ +YFSG + G
Sbjct: 382 NTFRGVTIEVQKFEDFKWLNASYVPVLKQLQDSETQSYYFSGHNNNG 522
Score = 121 bits (258), Expect(2) = 3e-032
Identities = 63/98 (64%), Positives = 70/98 (71%)
Frame = +3 / -2
Query: 30 PRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNHAFIGA*FNS 209
P L PEK* V+ SCL TGTY+A S +KSS F S VTP F+ N AFI A*F S
Sbjct: 521 PLLLWPEK**L*VSESWSCLSTGTYEAFSHLKSSNF*TSMVTPRKVFIENQAFIAA*FIS 342
Query: 210 SVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
SVT+* TT+SG LEF VELTTTE AR+LSEKTQK**R
Sbjct: 341 SVTR*NTTISGFLEFKVVELTTTEVARILSEKTQK**R 228
Score = 62.0 bits (129), Expect(3) = 5e-067
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / +1
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDR 359
+L E+ K + IAAEE+PKGLYCLG+RLT WF + L R+ ++R
Sbjct: 40 TLDEQMAAVSEKSSKYGQIAAEEIPKGLYCLGIRLTTEWFGNSNLHRRMNER 195
Score = 36.8 bits (74), Expect(2) = 3e-032
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -2
Query: 405 MVNRTPRQ*SPFGSSSAAI 461
+VNR PRQ*SPFG SSAAI
Sbjct: 149 VVNRIPRQ*SPFGISSAAI 93
Score = 25.8 bits (50), Expect(3) = 5e-067
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 28 TPIKFRNPK 2
TPIKFRNPK
Sbjct: 526 TPIKFRNPK 552
>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 203 bits (437), Expect(3) = 2e-066
Identities = 79/107 (73%), Positives = 92/107 (85%)
Frame = -2 / +1
Query: 349 VQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGM 170
+++ LRDNSLYHFCVFSDNILA SVVVNST +NS++PD VVFHLVTDE+NYA MKAWF M
Sbjct: 202 IETKLRDNSLYHFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSM 381
Query: 169 NDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRG 29
N +RGVT E+QK EDF WLNASYVPVLKQLQ++ TQ +YFSG + G
Sbjct: 382 NTFRGVTTEVQKFEDFKWLNASYVPVLKQLQDSETQSYYFSGHNNDG 522
Score = 122 bits (260), Expect(2) = 2e-032
Identities = 63/98 (64%), Positives = 70/98 (71%)
Frame = +3 / -2
Query: 30 PRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNHAFIGA*FNS 209
P L PEK* V+ SCL TGTY+A S +KSS F S VTP F+ N AFI A*F S
Sbjct: 521 PSLLWPEK**L*VSESWSCLSTGTYEAFSHLKSSNF*TSVVTPRKVFIENQAFIAA*FIS 342
Query: 210 SVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
SVT+* TT+SG LEF VELTTTE AR+LSEKTQK**R
Sbjct: 341 SVTR*NTTISGFLEFKVVELTTTEVARILSEKTQK**R 228
Score = 62.0 bits (129), Expect(3) = 2e-066
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / +1
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDR 359
+L E+ K + IAAEE+PKGLYCLG+RLT WF + L R+ ++R
Sbjct: 40 TLDEQMAAVSEKSSKYGQIAAEEIPKGLYCLGIRLTTEWFGNSNLHRRMNER 195
Score = 36.8 bits (74), Expect(2) = 2e-032
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -2
Query: 405 MVNRTPRQ*SPFGSSSAAI 461
+VNR PRQ*SPFG SSAAI
Sbjct: 149 VVNRIPRQ*SPFGISSAAI 93
Score = 25.8 bits (50), Expect(3) = 2e-066
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / +1
Query: 28 TPIKFRNPK 2
TPIKFRNPK
Sbjct: 526 TPIKFRNPK 552
>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
Length = 808
Score = 202 bits (435), Expect(3) = 4e-066
Identities = 78/107 (72%), Positives = 93/107 (86%)
Frame = -2 / +3
Query: 349 VQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGM 170
+++ LRD+SLYHFCVFSDNILA SVVVNST +NS++PD VVFHLVTDE+NYA MKAWF M
Sbjct: 204 IETKLRDDSLYHFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSM 383
Query: 169 NDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRG 29
N +RGVT+E+QK EDF WLNASYVPVLKQLQ++ TQ +YFSG + G
Sbjct: 384 NTFRGVTIEVQKFEDFKWLNASYVPVLKQLQDSETQSYYFSGHNNDG 524
Score = 121 bits (259), Expect(2) = 2e-032
Identities = 63/98 (64%), Positives = 70/98 (71%)
Frame = +3 / -1
Query: 30 PRLPLPEK*NFCVAAFCSCLRTGTYDALSQVKSSTFCISTVTPL*SFMPNHAFIGA*FNS 209
P L PEK* V+ SCL TGTY+A S +KSS F S VTP F+ N AFI A*F S
Sbjct: 523 PSLLWPEK**L*VSESWSCLSTGTYEAFSHLKSSNF*TSMVTPRKVFIENQAFIAA*FIS 344
Query: 210 SVTK*KTTLSGCLEFIAVELTTTETARMLSEKTQK**R 323
SVT+* TT+SG LEF VELTTTE AR+LSEKTQK**R
Sbjct: 343 SVTR*NTTISGFLEFKVVELTTTEVARILSEKTQK**R 230
Score = 62.0 bits (129), Expect(3) = 4e-066
Identities = 24/52 (46%), Positives = 33/52 (63%)
Frame = -2 / +3
Query: 514 SLXEKSKVXXXKXTXXXXIAAEELPKGLYCLGVRLTMXWFKSPELQRKFSDR 359
+L E+ K + IAAEE+PKGLYCLG+RLT WF + L R+ ++R
Sbjct: 42 TLDEQMAAVSEKSSKYGQIAAEEIPKGLYCLGIRLTTEWFGNSNLHRRMNER 197
Score = 36.8 bits (74), Expect(2) = 2e-032
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3 / -1
Query: 405 MVNRTPRQ*SPFGSSSAAI 461
+VNR PRQ*SPFG SSAAI
Sbjct: 151 VVNRIPRQ*SPFGISSAAI 95
Score = 25.8 bits (50), Expect(3) = 4e-066
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -2 / +3
Query: 28 TPIKFRNPK 2
TPIKFRNPK
Sbjct: 528 TPIKFRNPK 554
>gb|CA929288.1|CA929288 MTU2CA.P11.F04 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 625
Score = 139 bits (298), Expect = 1e-032
Identities = 54/99 (54%), Positives = 73/99 (73%)
Frame = -2 / -3
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
Q L D SL+H +FSDN+LA +VVVNST NS+HP K+VFH+V+D LNYA M+ WF +N
Sbjct: 332 QEKLDDPSLHHIALFSDNVLAAAVVVNSTITNSKHPSKLVFHIVSDRLNYAAMRMWFLVN 153
Query: 166 DYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYF 50
T+++Q +E+FTWLN+SY PVLKQL + + +YF
Sbjct: 152 RPGVATIQVQNIEEFTWLNSSYSPVLKQLGSRSMIDYYF 36
>gb|CX658367.1|CX658367 PO01034C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034C09 5', mRNA sequence
Length = 698
Score = 138 bits (296), Expect = 2e-032
Identities = 55/116 (47%), Positives = 76/116 (65%)
Frame = -2 / +1
Query: 373 KFSDRSPAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYA 194
K++D L D LYH+ +FSDN++A SVVVNS N++ P K VFH+VTD++N
Sbjct: 28 KYNDEGKPPLPELEDPKLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLG 207
Query: 193 PMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGT 26
M+ F + DY G +E++ VED+ +LN+SYVPVLKQL++A QKFYF T
Sbjct: 208 AMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVPVLKQLESANLQKFYFENKLENAT 375
>gb|CA930206.1|CA930206 MTU2CA.P8.E10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 625
Score = 136 bits (292), Expect = 8e-032
Identities = 53/99 (53%), Positives = 72/99 (72%)
Frame = -2 / -3
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
Q L D SL+H +FSDN+LA +VVVNST N +HP K+VFH+V+D LNYA M+ WF +N
Sbjct: 332 QEKLDDPSLHHIALFSDNVLAAAVVVNSTITNYKHPSKLVFHIVSDRLNYAAMRMWFLVN 153
Query: 166 DYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYF 50
T+++Q +E+FTWLN+SY PVLKQL + + +YF
Sbjct: 152 RPGVATIQVQNIEEFTWLNSSYSPVLKQLGSRSMIDYYF 36
>gb|CX656687.1|CX656687 PO02022C08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02022C08 5', mRNA sequence
Length = 562
Score = 84.0 bits (177), Expect(2) = 6e-030
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -2 / +3
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
++ D SLYH+ +FSDN++AVSVV+ S N+ P K VFH+VTD++N A MK WF M
Sbjct: 126 KAEFEDPSLYHYAIFSDNVIAVSVVIRSVVKNAEEPWKHVFHVVTDKMNVAAMKVWFRMR 305
Query: 166 DYRG 155
G
Sbjct: 306 PVEG 317
Score = 66.1 bits (138), Expect(2) = 6e-030
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = -2 / +3
Query: 157 GVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGT 26
G VEI VEDF++LN+SYVPVLKQL++A QKFYF G T
Sbjct: 318 GAHVEINAVEDFSFLNSSYVPVLKQLESANMQKFYFENQGENAT 449
>gb|CA929157.1|CA929157 MTU2CA.P8.B11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 465
Score = 126 bits (269), Expect = 1e-028
Identities = 50/99 (50%), Positives = 69/99 (69%)
Frame = -2 / -2
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
Q L D SL+H +FS N+L+ +VVVNST N +HP K+VFH+V+D L YA M+ WF +N
Sbjct: 332 QEKLDDPSLHHSALFSHNVLSAAVVVNSTITNYKHPSKLVFHIVSDRLTYAAMRMWFLVN 153
Query: 166 DYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYF 50
T+++Q +E+FTWLN+SY PVLKQL + + YF
Sbjct: 152 RPGVATIQVQNIEEFTWLNSSYSPVLKQLGSRSMIDSYF 36
>gb|CF230845.1|CF230845 PtaC0014A2A0202 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 474
Score = 124 bits (266), Expect = 3e-028
Identities = 48/86 (55%), Positives = 63/86 (73%)
Frame = -2 / +2
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
Q L D SL+H +FSDN+LA +VVVNST NS+HP K+VFH+V+D LNYA M+ WF +N
Sbjct: 215 QEKLDDPSLHHIALFSDNVLAAAVVVNSTITNSKHPSKLVFHIVSDRLNYAAMRMWFLVN 394
Query: 166 DYRGVTVEIQKVEDFTWLNASYVPVL 89
T+++Q +E FTW N+SY PVL
Sbjct: 395 RPGVATIQVQNIEXFTWXNSSYSPVL 472
>gb|CX656981.1|CX656981 PO02029D08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02029D08 5', mRNA sequence
Length = 483
Score = 84.0 bits (177), Expect(2) = 5e-028
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = -2 / +3
Query: 346 QSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWFGMN 167
++ D SLYH+ +FSDN++AVSVV+ S N+ P K VFH+VTD++N A MK WF M
Sbjct: 126 KAEFEDPSLYHYAIFSDNVIAVSVVIRSVVKNAEEPWKHVFHVVTDKMNVAAMKVWFRMR 305
Query: 166 DYRG 155
G
Sbjct: 306 PVEG 317
Score = 59.7 bits (124), Expect(2) = 5e-028
Identities = 25/44 (56%), Positives = 30/44 (68%)
Frame = -2 / +3
Query: 157 GVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGSRGT 26
G VEI VEDF+ LN+SYVPVLKQL++A QKF+F T
Sbjct: 318 GAHVEINAVEDFSLLNSSYVPVLKQLESANMQKFHFENQAENAT 449
>gb|CA932946.1|CA932946 MTU5CS.P1.E05 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 660
Score = 112 bits (240), Expect(2) = 1e-027
Identities = 43/93 (46%), Positives = 62/93 (66%)
Frame = -2 / -1
Query: 373 KFSDRSPAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYA 194
K++D L D LYH+ +FSDN++A SVVVNS N++ P K VFH+VTD++N
Sbjct: 279 KYNDEGKPPLPELEDPKLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLG 100
Query: 193 PMKAWFGMNDYRGVTVEIQKVEDFTWLNASYVP 95
M+ F + DY G +E++ VED+ +LN+SYVP
Sbjct: 99 AMQVMFKLKDYNGAHIEVKAVEDYKFLNSSYVP 1
Score = 29.9 bits (59), Expect(2) = 1e-027
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2 / -1
Query: 460 IAAEELPKGLYCLGVRLTMXWFKSPE 383
IAA+ +PK L+CL +RL PE
Sbjct: 357 IAAKSIPKSLHCLAMRLMEERIAHPE 280
>gb|BP923962.1|BP923962 BP923962 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-025_O03.f 5', mRNA sequence
Length = 484
Score = 99.6 bits (211), Expect(2) = 5e-022
Identities = 40/107 (37%), Positives = 60/107 (56%)
Frame = -2 / +3
Query: 355 PAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWF 176
P + L DNS +HF + SDN+LA SVV NS N+ P+K V H++TD Y+PM+AWF
Sbjct: 126 PELVPALVDNSYFHFVLASDNVLAASVVANSLFQNALRPEKFVLHIITDRKTYSPMQAWF 305
Query: 175 GMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGS 35
++ +E++ + F W VPVL+ ++ + F G S
Sbjct: 306 SLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDLRVRSRFRGGSS 446
Score = 24.0 bits (46), Expect(2) = 5e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2 / +3
Query: 460 IAAEELPKGLYCLGVRL 410
+A+ +PK L CL +RL
Sbjct: 27 VASSSIPKQLLCLALRL 77
>gb|CK318880.1|CK318880 X9P04d06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 655
Score = 97.7 bits (207), Expect(2) = 4e-021
Identities = 40/107 (37%), Positives = 60/107 (56%)
Frame = -2 / +2
Query: 355 PAVQSNLRDNSLYHFCVFSDNILAVSVVVNSTAINSRHPDKVVFHLVTDELNYAPMKAWF 176
P + L DNS +HF + SDN+LA SVV +S N+ P+K V H+VTD Y+PM+AWF
Sbjct: 224 PELVPALVDNSYFHFVLASDNVLAASVVASSLFQNALRPEKFVLHIVTDRKTYSPMQAWF 403
Query: 175 GMNDYRGVTVEIQKVEDFTWLNASYVPVLKQLQNAATQKFYFSGSGS 35
++ +E++ + F W VPVL+ ++ + F G S
Sbjct: 404 SLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDLRVRSRFRGGSS 544
Score = 22.6 bits (43), Expect(2) = 4e-021
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -2 / +2
Query: 460 IAAEELPKGLYCLGVRL 410
+A+ +PK L CL ++L
Sbjct: 125 VASSSIPKQLLCLALKL 175
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 238,889,030
Number of Sequences: 369679
Number of extensions: 3147897
Number of successful extensions: 61636
Number of sequences better than 1.0e-020: 16
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 5873911080
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)