TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192481.2.2
(1053 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN523540.1|CN523540 GQ015M10.T3_C01 GQ015 Populus tricho... 125 1e-041
gb|DT522867.1|DT522867 WS02038.B21_C12 PTxN-IB-N-A-11 Popul... 124 1e-041
gb|DT507689.1|DT507689 WS02418.BR_P06 PTxD-ICC-N-A-14 Popul... 124 1e-041
gb|DT477696.1|DT477696 WS02520.BR_L10 PT-MB-N-A-15 Populus ... 102 1e-040
gb|DT512317.1|DT512317 WS02418.B21_P06 PTxD-ICC-N-A-14 Popu... 124 2e-039
gb|CX184893.1|CX184893 F06_45-64_12.ab1 leaf inoculated wit... 105 5e-035
gb|CA932989.1|CA932989 MTU5CS.P2.A08 Aspen stem cDNA Librar... 72 6e-032
gb|CA930657.1|CA930657 MTU4CA.P25.B01 Aspen apex cDNA Libra... 72 6e-032
gb|CA932502.1|CA932502 MTU5CS.P13.G10 Aspen stem cDNA Libra... 71 2e-031
gb|CA929508.1|CA929508 MTU2CA.P14.G08 Aspen apex cDNA Libra... 71 2e-031
gb|CA929561.1|CA929561 MTU2CA.P15.E07 Aspen apex cDNA Libra... 70 2e-031
gb|CF230979.1|CF230979 PtaC0015H2H0216 Poplar cDNA library ... 78 3e-031
gb|CA929690.1|CA929690 MTU2CA.P1.C07 Aspen apex cDNA Librar... 71 4e-031
gb|CF230980.1|CF230980 PtaC0015H3H0315 Poplar cDNA library ... 73 5e-031
gb|CF119929.1|CF119929 MTU10CS.P8.B03 Aspen stem cDNA Libra... 68 7e-031
gb|CA923884.1|CA923884 MTU7CL.P16.B05 Aspen leaf cDNA Libra... 68 1e-030
gb|BP932415.1|BP932415 BP932415 full-length enriched poplar... 101 4e-030
gb|CA931297.1|CA931297 MTU2TA.P5.D08 Aspen apex cDNA Librar... 72 8e-030
gb|DT506123.1|DT506123 WS01812.C21_M01 PTxD-IL-N-A-9 Populu... 101 2e-029
gb|BU879717.1|BU879717 V063E08 Populus flower cDNA library ... 79 7e-028
gb|DT480412.1|DT480412 WS02528.BR_N05 PT-MB-N-A-15 Populus ... 124 8e-028
gb|DT485659.1|DT485659 WS02528.B21_N05 PT-MB-N-A-15 Populus... 124 8e-028
gb|CX174695.1|CX174695 E01_69-19_09.ab1 leaf inoculated wit... 79 4e-027
gb|BU884302.1|BU884302 R008H06 Populus root cDNA library Po... 60 5e-027
gb|CA823479.1|CA823479 R26G09 two-month-old roots from clon... 56 4e-026
gb|CA929768.1|CA929768 MTU2CA.P2.D12 Aspen apex cDNA Librar... 54 1e-024
gb|CK099722.1|CK099722 A081P76.5pR Hybrid aspen plasmid lib... 59 3e-022
gb|BU830071.1|BU830071 T003E09 Populus apical shoot cDNA li... 103 2e-021
gb|CF936535.1|CF936535 PO3007C02 Populus tomentiglandulosa ... 102 3e-021
gb|CA930042.1|CA930042 MTU2CA.P6.C11 Aspen apex cDNA Librar... 72 1e-020
gb|CA930406.1|CA930406 MTU4CA.P22.C05 Aspen apex cDNA Libra... 72 1e-020
>gb|CN523540.1|CN523540 GQ015M10.T3_C01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M10_C01 5', mRNA sequence
Length = 804
Score = 125 bits (267), Expect(2) = 1e-041
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / +1
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 328 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDRYSPPE 507
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 508 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 687
Query: 212 * 210
*
Sbjct: 688 * 690
Score = 65.7 bits (137), Expect(2) = 1e-041
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = -2 / +1
Query: 842 GGLRXXXXXXXXXXXXXXXXXXVFGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
GGL+ FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 46 GGLKTYVTGASDSKLAILLIADAFGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 216
>gb|DT522867.1|DT522867 WS02038.B21_C12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02038_C12 3', mRNA sequence
Length = 930
Score = 124 bits (266), Expect(2) = 1e-041
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / -2
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 614 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 435
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 434 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 255
Query: 212 * 210
*
Sbjct: 254 * 252
Score = 65.7 bits (137), Expect(2) = 1e-041
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = -2 / -2
Query: 842 GGLRXXXXXXXXXXXXXXXXXXVFGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
GGL+ FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 896 GGLKTYVTGASDSKLAILLIADAFGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 726
>gb|DT507689.1|DT507689 WS02418.BR_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_P06 5', mRNA sequence
Length = 783
Score = 124 bits (266), Expect(2) = 1e-041
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 380 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 559
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 560 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 739
Query: 212 * 210
*
Sbjct: 740 * 742
Score = 65.7 bits (137), Expect(2) = 1e-041
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = -2 / +2
Query: 842 GGLRXXXXXXXXXXXXXXXXXXVFGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
GGL+ FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 98 GGLKTYVTGASDSKLAILLIADAFGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 268
>gb|DT477696.1|DT477696 WS02520.BR_L10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L10 5', mRNA sequence
Length = 850
Score = 102 bits (217), Expect(4) = 1e-040
Identities = 44/101 (43%), Positives = 61/101 (60%)
Frame = -2 / -3
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F +L + EV + KIF
Sbjct: 398 IKAAVLCHPSFVTVDDFKEFKVPISILGAETDQMSPPALLKQFEELLASKSEVDSFVKIF 219
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN*IK 204
V HG+ RY+ D AVK+AE A ++ WF K++ *++
Sbjct: 218 PKVAHGWTVRYDVEDEAAVKSAEEAHGNLLEWFAKYVK*VE 96
Score = 55.6 bits (115), Expect(4) = 1e-040
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -3
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 680 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 588
Score = 33.1 bits (66), Expect(4) = 1e-040
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -3
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 467 AIGAVGFCWGAKVVVELGKSS 405
Score = 32.2 bits (64), Expect(4) = 1e-040
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -3
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 548 WLKDHGMHKGFEDAKPVIEALNSKGVS 468
>gb|DT512317.1|DT512317 WS02418.B21_P06 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_P06 3', mRNA sequence
Length = 867
Score = 124 bits (266), Expect(2) = 2e-039
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 618 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 439
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 438 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 259
Query: 212 * 210
*
Sbjct: 258 * 256
Score = 58.3 bits (121), Expect(2) = 2e-039
Identities = 24/34 (70%), Positives = 28/34 (82%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
F YEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 831 FCYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 730
>gb|CX184893.1|CX184893 F06_45-64_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 537
Score = 105 bits (225), Expect(2) = 5e-035
Identities = 39/101 (38%), Positives = 64/101 (63%)
Frame = -2 / +3
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG + V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 234 SIGAAGFCWGGNVGVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDRYSPPE 413
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAV 270
++ F +L + ++ KIF GV HG+ RYN D AV
Sbjct: 414 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAV 536
Score = 62.5 bits (130), Expect(2) = 5e-035
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +3
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 21 FGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 122
>gb|CA932989.1|CA932989 MTU5CS.P2.A08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 623
Score = 72.1 bits (151), Expect(4) = 6e-032
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 206 IKAAVLCHPSFVTVDDFKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 27
Query: 326 QGVEHGF 306
V HG+
Sbjct: 26 PKVAHGW 6
Score = 55.6 bits (115), Expect(4) = 6e-032
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 488 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 396
Score = 33.1 bits (66), Expect(4) = 6e-032
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(4) = 6e-032
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|CA930657.1|CA930657 MTU4CA.P25.B01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 552
Score = 72.1 bits (151), Expect(4) = 6e-032
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 207 IKAAVLCHPSFVTVDDFKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 28
Query: 326 QGVEHGF 306
V HG+
Sbjct: 27 PKVAHGW 7
Score = 55.6 bits (115), Expect(4) = 6e-032
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 489 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 397
Score = 33.1 bits (66), Expect(4) = 6e-032
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 276 AIGAVGFCWGAKVVVELGKSS 214
Score = 32.7 bits (65), Expect(4) = 6e-032
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 357 WLKDHGAHKGFEDAKPVIEALNSKGVS 277
>gb|CA932502.1|CA932502 MTU5CS.P13.G10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 623
Score = 70.7 bits (148), Expect(4) = 2e-031
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD K+ K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 206 IKAAVLCHPSFVTVDDFKQFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 27
Query: 326 QGVEHGF 306
V HG+
Sbjct: 26 PKVAHGW 6
Score = 55.6 bits (115), Expect(4) = 2e-031
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 488 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 396
Score = 33.1 bits (66), Expect(4) = 2e-031
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(4) = 2e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|CA929508.1|CA929508 MTU2CA.P14.G08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 609
Score = 70.7 bits (148), Expect(4) = 2e-031
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2 / -2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD K+ K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 206 IKAAVLCHPSFVTVDDFKQFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 27
Query: 326 QGVEHGF 306
V HG+
Sbjct: 26 PKVAHGW 6
Score = 55.6 bits (115), Expect(4) = 2e-031
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -2
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 488 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 396
Score = 33.1 bits (66), Expect(4) = 2e-031
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -2
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(4) = 2e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -2
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|CA929561.1|CA929561 MTU2CA.P15.E07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 668
Score = 70.3 bits (147), Expect(4) = 2e-031
Identities = 31/67 (46%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD K+ K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 218 IKAAVLCHPSFVTVDDFKQPKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 39
Query: 326 QGVEHGF 306
V HG+
Sbjct: 38 PKVAHGW 18
Score = 55.6 bits (115), Expect(4) = 2e-031
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 500 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 408
Score = 33.1 bits (66), Expect(4) = 2e-031
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 287 AIGAVGFCWGAKVVVELGKSS 225
Score = 32.7 bits (65), Expect(4) = 2e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 368 WLKDHGAHKGFEDAKPVIEALNSKGVS 288
>gb|CF230979.1|CF230979 PtaC0015H2H0216 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 763
Score = 77.6 bits (163), Expect(4) = 3e-031
Identities = 36/92 (39%), Positives = 49/92 (53%)
Frame = -2 / +2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+ E K PI ILGA+ D +PP + + VL + V + KIF
Sbjct: 482 IKAAVLXHPSLVTVDDIXEFKVPISILGAEIDQMSPPALLKQXEEVLASKSXVDSFVKIF 661
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNW 231
V HG+ RY+ A K A+ A ++ W
Sbjct: 662 XKVAHGWTVRYHVEXEPAPKXAKEAHGNLMEW 757
Score = 49.2 bits (101), Expect(4) = 3e-031
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = -2 / +2
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++AD +A AG++ + PDF GD
Sbjct: 200 YGYEAPNLRKLADXIAXAGFYALXPDFFYGD 292
Score = 33.1 bits (66), Expect(4) = 3e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 332 WLKDHGVHKGXEDAKPVIEALNSKGVS 412
Score = 31.3 bits (62), Expect(4) = 3e-031
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKT 513
++ G+CWG K+ VE+GK+
Sbjct: 413 AIGAVGFCWGAKVVVELGKS 472
>gb|CA929690.1|CA929690 MTU2CA.P1.C07 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 611
Score = 71.2 bits (149), Expect(4) = 4e-031
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = -2 / +1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 406 IKAGVLCHPSLVTVDDIKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 585
Query: 326 QGVEHGF 306
V HG+
Sbjct: 586 PKVAHGW 606
Score = 54.2 bits (112), Expect(4) = 4e-031
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -2 / +1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ +VPDF GD
Sbjct: 124 YGYEAPNLRKLADKIAAAGFYALVPDFFYGD 216
Score = 33.1 bits (66), Expect(4) = 4e-031
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 337 AIGAVGFCWGAKVVVELGKSS 399
Score = 32.2 bits (64), Expect(4) = 4e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 256 WLKDHGMHKGFEDAKPVIEALNSKGVS 336
>gb|CF230980.1|CF230980 PtaC0015H3H0315 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 72.5 bits (152), Expect(4) = 5e-031
Identities = 32/71 (45%), Positives = 41/71 (57%)
Frame = -2 / +2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+KE K PI ILGA+ D +PP + +F VL + E + IF
Sbjct: 473 IKAAVLCHPSLVTVDDIKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEXDSFVXIF 652
Query: 326 QGVEHGFACRY 294
V HG+ RY
Sbjct: 653 PKVAHGWTVRY 685
Score = 54.2 bits (112), Expect(4) = 5e-031
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -2 / +2
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ +VPDF GD
Sbjct: 191 YGYEAPNLRKLADKIAAAGFYALVPDFFYGD 283
Score = 32.2 bits (64), Expect(4) = 5e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +2
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 323 WLKDHGVHKGFEDAKPVIEALNSKGVS 403
Score = 31.3 bits (62), Expect(4) = 5e-031
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKT 513
++ G+CWG K+ VE+GK+
Sbjct: 404 AIGAVGFCWGAKVVVELGKS 463
>gb|CF119929.1|CF119929 MTU10CS.P8.B03 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 620
Score = 68.4 bits (143), Expect(4) = 7e-031
Identities = 31/67 (46%), Positives = 39/67 (58%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +P + +F VL + EV + KIF
Sbjct: 206 IKAAVLCHPSFVTVDDFKEFKVPISILGAEIDQMSPSALLKQFEEVLASKSEVDSFVKIF 27
Query: 326 QGVEHGF 306
V HG+
Sbjct: 26 PKVAHGW 6
Score = 55.6 bits (115), Expect(4) = 7e-031
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 488 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 396
Score = 33.1 bits (66), Expect(4) = 7e-031
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(4) = 7e-031
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|CA923884.1|CA923884 MTU7CL.P16.B05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 650
Score = 67.5 bits (141), Expect(4) = 1e-030
Identities = 30/67 (44%), Positives = 39/67 (58%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
++A L HP VT DD KE + PI ILGA+ D +PP + +F VL + EV KIF
Sbjct: 206 IRAAVLCHPSFVTVDDFKEFRVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSLVKIF 27
Query: 326 QGVEHGF 306
V HG+
Sbjct: 26 PKVAHGW 6
Score = 55.6 bits (115), Expect(4) = 1e-030
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 488 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 396
Score = 33.1 bits (66), Expect(4) = 1e-030
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(4) = 1e-030
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|BP932415.1|BP932415 BP932415 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-035_O11.r 3', mRNA sequence
Length = 640
Score = 101 bits (216), Expect(3) = 4e-030
Identities = 44/101 (43%), Positives = 61/101 (60%)
Frame = -2 / -2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F +L + EV + KIF
Sbjct: 423 IKAAVLCHPSFVTVDDFKEFKVPISILGAETDHMSPPALLKQFEELLASKSEVDSFVKIF 244
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN*IK 204
V HG+ RY+ D AVK+AE A ++ WF K++ *++
Sbjct: 243 PKVAHGWTVRYDVEDEAAVKSAEEAHGNLLEWFAKYVK*VE 121
Score = 34.5 bits (69), Expect(3) = 4e-030
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2 / -2
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ ALK +G S
Sbjct: 573 WLKDHGMHKGFEDAKPVIEALKSKGVS 493
Score = 33.6 bits (67), Expect(3) = 4e-030
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2 / -2
Query: 596 AALKKEGKSVAVGGYCWGGKLSVEVGKTS 510
A K ++ G+CWG K+ VE+GK+S
Sbjct: 516 ALKSKGVSAIGAVGFCWGAKVVVELGKSS 430
>gb|CA931297.1|CA931297 MTU2TA.P5.D08 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 72.1 bits (151), Expect(4) = 8e-030
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 207 IKAAVLCHPSFVTVDDFKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 28
Query: 326 QGVEHGF 306
V HG+
Sbjct: 27 PKVAHGW 7
Score = 48.3 bits (99), Expect(4) = 8e-030
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR DK+ AG++ VVPDF GD
Sbjct: 489 YGYEAPNLRNCPDKMPAAGFYAVVPDFFYGD 397
Score = 33.1 bits (66), Expect(4) = 8e-030
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 276 AIGAVGFCWGAKVVVELGKSS 214
Score = 32.7 bits (65), Expect(4) = 8e-030
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 357 WLKDHGAHKGFEDAKPVIEALNSKGVS 277
>gb|DT506123.1|DT506123 WS01812.C21_M01 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01812_M01 3', mRNA sequence
Length = 662
Score = 101 bits (216), Expect(3) = 2e-029
Identities = 44/101 (43%), Positives = 61/101 (60%)
Frame = -2 / +3
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F +L + EV + KIF
Sbjct: 231 IKAAVLCHPSLVTVDDFKEFKVPISILGAETDHMSPPALLKQFEELLASKSEVDSFVKIF 410
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN*IK 204
V HG+ RY+ D AVK+AE A ++ WF K++ *++
Sbjct: 411 PKVAHGWTVRYDVEDEAAVKSAEEAHGNLLEWFAKYVK*VE 533
Score = 33.1 bits (66), Expect(3) = 2e-029
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / +3
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 162 AIGAVGFCWGAKVVVELGKSS 224
Score = 32.2 bits (64), Expect(3) = 2e-029
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +3
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 81 WLKDHDVHKGFEDAKPVIEALNSKGVS 161
>gb|BU879717.1|BU879717 V063E08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 592
Score = 79.0 bits (166), Expect(2) = 7e-028
Identities = 26/75 (34%), Positives = 51/75 (68%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 353 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 532
Query: 392 EVYRFVHVLRERHEV 348
++ F +L + ++
Sbjct: 533 QLKEFGEILSAKSQL 577
Score = 65.7 bits (137), Expect(2) = 7e-028
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = -2 / +2
Query: 842 GGLRXXXXXXXXXXXXXXXXXXVFGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
GGL+ FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 71 GGLKTYVTGASDSKLAILLIADAFGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 241
>gb|DT480412.1|DT480412 WS02528.BR_N05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_N05 5', mRNA sequence
Length = 766
Score = 124 bits (266), Expect = 8e-028
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / +3
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 150 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 329
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 330 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 509
Query: 212 * 210
*
Sbjct: 510 * 512
>gb|DT485659.1|DT485659 WS02528.B21_N05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_N05 3', mRNA sequence
Length = 767
Score = 124 bits (266), Expect = 8e-028
Identities = 48/121 (39%), Positives = 78/121 (64%)
Frame = -2 / -3
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 618 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPE 439
Query: 392 EVYRFVHVLRERHEVPYYAKIFQGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN 213
++ F +L + ++ KIF GV HG+ RYN D AVK+AE A M++WF K +
Sbjct: 438 QLKEFGEILSAKSQLASLLKIFPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK 259
Query: 212 * 210
*
Sbjct: 258 * 256
>gb|CX174695.1|CX174695 E01_69-19_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 555
Score = 79.4 bits (167), Expect(2) = 4e-027
Identities = 26/75 (34%), Positives = 51/75 (68%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPK 393
S+ G+CWGG ++V++ ++D++A + HP +T D+++EVK PI +LGA+ D +PP+
Sbjct: 260 SIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDRYSPPE 439
Query: 392 EVYRFVHVLRERHEV 348
++ F +L + ++
Sbjct: 440 QLKEFGEILSAKSQL 484
Score = 62.5 bits (130), Expect(2) = 4e-027
Identities = 25/34 (73%), Positives = 29/34 (85%)
Frame = -2 / +2
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGDYLD 672
FGYEAP LR++ADKVA AG+FVVVPDF GD +D
Sbjct: 47 FGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPVD 148
>gb|BU884302.1|BU884302 R008H06 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 628
Score = 59.7 bits (124), Expect(4) = 5e-027
Identities = 26/53 (49%), Positives = 34/53 (64%)
Frame = -2 / +1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEV 348
+KA L HP VT DD+KE+K PI ILGA+ D +PP + +F VL + EV
Sbjct: 466 IKAAVLCHPSLVTVDDIKELKVPISILGAEIDQMSPPALLKQFEEVLASKSEV 624
Score = 54.2 bits (112), Expect(4) = 5e-027
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -2 / +1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ +VPDF GD
Sbjct: 184 YGYEAPNLRKLADKIAAAGFYALVPDFFYGD 276
Score = 33.1 bits (66), Expect(4) = 5e-027
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 397 AIGAVGFCWGAKVVVELGKSS 459
Score = 29.5 bits (58), Expect(4) = 5e-027
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / +1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAK + AL +G S
Sbjct: 316 WLKDHGMHKGCEDAKSVIEALNSKGVS 396
>gb|CA823479.1|CA823479 R26G09 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 625
Score = 55.6 bits (115), Expect(4) = 4e-026
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = -2 / +1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ VVPDF GD
Sbjct: 175 YGYEAPNLRKLADKIAAAGFYAVVPDFFYGD 267
Score = 52.4 bits (108), Expect(4) = 4e-026
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = -2 / +1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPP 396
+KA L HP VT DD KE K PI ILGA+ D +PP
Sbjct: 457 IKAAVLCHPSFVTVDDFKEFKVPISILGAETDXMSPP 567
Score = 33.1 bits (66), Expect(4) = 4e-026
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / +1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 388 AIGAVGFCWGAKVVVELGKSS 450
Score = 32.2 bits (64), Expect(4) = 4e-026
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / +1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 307 WLKDHGMHKGFEDAKPVIEALNSKGVS 387
>gb|CA929768.1|CA929768 MTU2CA.P2.D12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 612
Score = 54.2 bits (112), Expect(4) = 1e-024
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -2 / -1
Query: 773 FGYEAPLLRQIADKVAKAGYFVVVPDFLKGD 681
+GYEAP LR++ADK+A AG++ +VPDF GD
Sbjct: 489 YGYEAPNLRKLADKIAAAGFYALVPDFFYGD 397
Score = 48.7 bits (100), Expect(4) = 1e-024
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVL 366
+KA L HP VT DD+KE K PI ILGA+ D +P + +F VL
Sbjct: 207 IKAGVLCHPSLVTVDDIKEFKVPISILGAEIDQMSPLAFLKQFEEVL 67
Score = 33.1 bits (66), Expect(4) = 1e-024
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 276 AIGAVGFCWGAKVVVELGKSS 214
Score = 32.2 bits (64), Expect(4) = 1e-024
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 357 WLKDHGMHKGFEDAKPVIEALNSKGVS 277
>gb|CK099722.1|CK099722 A081P76.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A081P76 5', mRNA sequence
Length = 470
Score = 59.3 bits (123), Expect(4) = 3e-022
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -2 / +2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+KE+K PI ILGA+ D +PP + +F VL + E+ + F
Sbjct: 272 IKAAVLCHPSLVTVDDIKELKVPISILGAEIDQMSPPALLKQFEEVLASKSELIAL*RYF 451
Query: 326 Q 324
Q
Sbjct: 452 Q 454
Score = 38.2 bits (77), Expect(4) = 3e-022
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -2 / +2
Query: 749 RQIADKVAKAGYFVVVPDFLKGD 681
R +ADK+A AG++ +VPDF GD
Sbjct: 14 RPLADKIAAAGFYALVPDFFYGD 82
Score = 33.1 bits (66), Expect(4) = 3e-022
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / +2
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 203 AIGAVGFCWGAKVVVELGKSS 265
Score = 29.5 bits (58), Expect(4) = 3e-022
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2 / +2
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAK + AL +G S
Sbjct: 122 WLKDHGMHKGCEDAKSVIEALNSKGVS 202
>gb|BU830071.1|BU830071 T003E09 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 462
Score = 103 bits (220), Expect = 2e-021
Identities = 45/101 (44%), Positives = 63/101 (62%)
Frame = -2 / +2
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+KE+K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 56 IKAAVLCHPSLVTVDDIKELKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 235
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN*IK 204
V HG+ RY+ D AVK+AE A ++ WF K++ *++
Sbjct: 236 PKVAHGWTVRYDVEDEAAVKSAEEAHGNLMEWFAKYVK*VE 358
>gb|CF936535.1|CF936535 PO3007C02 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 528
Score = 102 bits (218), Expect = 3e-021
Identities = 45/101 (44%), Positives = 62/101 (61%)
Frame = -2 / +1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD+KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 82 IKAAVLCHPSLVTVDDIKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 261
Query: 326 QGVEHGFACRYNTTDPFAVKTAETALAYMVNWFNKHLN*IK 204
V HG+ RY+ D AVK+AE A ++ WF K++ *++
Sbjct: 262 PKVAHGWTVRYDVEDEAAVKSAEEAHGNLMEWFAKYVK*VE 384
>gb|CA930042.1|CA930042 MTU2CA.P6.C11 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 401
Score = 72.1 bits (151), Expect(3) = 1e-020
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2 / -3
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 207 IKAAVLRHPSFVTVDDFKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 28
Query: 326 QGVEHGF 306
V HG+
Sbjct: 27 PKVAHGW 7
Score = 33.1 bits (66), Expect(3) = 1e-020
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 275 AIGAVGFCWGAKVVVELGKSS 213
Score = 32.7 bits (65), Expect(3) = 1e-020
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 356 WLKDHGAHKGFEDAKPVIEALNSKGVS 276
>gb|CA930406.1|CA930406 MTU4CA.P22.C05 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 402
Score = 72.1 bits (151), Expect(3) = 1e-020
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2 / -1
Query: 506 VKAVCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVLRERHEVPYYAKIF 327
+KA L HP VT DD KE K PI ILGA+ D +PP + +F VL + EV + KIF
Sbjct: 207 IKAAVLCHPSFVTVDDFKEFKVPISILGAEIDQMSPPALLKQFEEVLASKSEVDSFVKIF 28
Query: 326 QGVEHGF 306
V HG+
Sbjct: 27 PKVAHGW 7
Score = 33.1 bits (66), Expect(3) = 1e-020
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2 / -1
Query: 572 SVAVGGYCWGGKLSVEVGKTS 510
++ G+CWG K+ VE+GK+S
Sbjct: 276 AIGAVGFCWGAKVVVELGKSS 214
Score = 32.7 bits (65), Expect(3) = 1e-020
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2 / -1
Query: 650 WLEAHSPVKAAEDAKPLFAALKKEGKS 570
WL+ H K EDAKP+ AL +G S
Sbjct: 357 WLKDHGAHKGFEDAKPVIEALNSKGVS 277
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 413,605,898
Number of Sequences: 369679
Number of extensions: 4910015
Number of successful extensions: 33911
Number of sequences better than 1.0e-020: 39
length of database: 67,802,888
effective HSP length: 53
effective length of database: 48,209,901
effective search space used: 14318340597
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)